View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12362_high_15 (Length: 238)
Name: NF12362_high_15
Description: NF12362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12362_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 19 - 224
Target Start/End: Original strand, 47472380 - 47472585
Alignment:
| Q |
19 |
ccaaagactgcatggttaaggggtaaacttgtaaagttgtaatctaaaccgcactagttaaacattgcattatactctataatcttaagtattacataat |
118 |
Q |
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| T |
47472380 |
ccaaagactgcatggttaaggggtaaacttgtaaagttgtaatctaaaccgcactagttaaacattgcattatactctataatcttaagtattacataat |
47472479 |
T |
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| Q |
119 |
cgaaaaattacagcagtcactttgctgtcggagacgtaggaacaattgaccagattacgtgataaatcatttatgttcttctgtgcatttatttatttgt |
218 |
Q |
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| T |
47472480 |
cgaaaaattacagcagtcactttgctgtcggagacgtaggaacaattgaccagattacgtgataaatcatttatgttcttctgtgcatttatttatttgt |
47472579 |
T |
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| Q |
219 |
tttctt |
224 |
Q |
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|||||| |
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| T |
47472580 |
tttctt |
47472585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 49 - 212
Target Start/End: Original strand, 47475651 - 47475815
Alignment:
| Q |
49 |
gtaaagttgtaatctaaaccgcactagtta-aacattgcattatactctataatcttaagtattacataatcgaaaaattacagcagtcactttgctgtc |
147 |
Q |
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| T |
47475651 |
gtaaacttgtaatctgaaccgtacgatttataacgttacattgtactctataatctgaagtattgcataatcgaaaaactacaacaatcactctgttgtc |
47475750 |
T |
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| Q |
148 |
ggagacgtaggaacaattgaccagattacgtgataaatcatttatgttcttctgtgcatttattt |
212 |
Q |
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| T |
47475751 |
ggagacgtaggaccaattaaccaaactatgtgataaattgtttatgttcttgtgtgcatttattt |
47475815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 86 - 170
Target Start/End: Original strand, 24801820 - 24801904
Alignment:
| Q |
86 |
cattatactctataatcttaagtattacataatcgaaaaattacagcagtcactttgctgtcggagacgtaggaacaattgacca |
170 |
Q |
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| T |
24801820 |
cattgtactctataatctgaagtattgcataatcgaaaaactacaacaatcactctgttgtcggagacgtaggaccaattaacca |
24801904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 224
Target Start/End: Complemental strand, 8072893 - 8072767
Alignment:
| Q |
99 |
aatcttaagtattacataatcgaaaaattacagcagtcactttgctgtcggagacgtaggaacaattgaccagattacgtgataaatcatttatgttctt |
198 |
Q |
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|||| |||| ||| |||||| |||||| |||| ||| ||||||||||||||| ||||||| |||||| | | || ||||| |||||||| ||||||| |
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| T |
8072893 |
aatcgtaagaattgcataatagaaaaactacatcagccactttgctgtcggaaacgtaggcacaattagtcgaactatgtgatcaatcatttgtgttctt |
8072794 |
T |
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| Q |
199 |
ctgtgca-tttatttatttgttttctt |
224 |
Q |
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| T |
8072793 |
gtgtgcattttatttatttgttttctt |
8072767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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