View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12362_high_2 (Length: 555)
Name: NF12362_high_2
Description: NF12362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12362_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 125 - 535
Target Start/End: Original strand, 12140972 - 12141382
Alignment:
| Q |
125 |
aaaaggtctcaacagtgcttatatgattatatctatacctttagaatcgttttcttggcacttatttcgcagaatgtcatgtgtgtttgttcttaatgga |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12140972 |
aaaaggtctcaacagtgcttatatgattatatctatacatttagaataattttcttggcacttatttcgcagaatgtcatgtgtgtttgttcttaatgga |
12141071 |
T |
|
| Q |
225 |
ggcattaattttcacaatgttttgggtaacatattttaaattgaatttggcaattatcatggttgagtttgatttggttgaagttttaatctgaatgata |
324 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
12141072 |
ggcattaattttcaccatgttttgggtaacttattttaaattgaatttggcaattatcatggttgagtttgatttggttgaagttttagtctgaatgata |
12141171 |
T |
|
| Q |
325 |
gtatacatcttgattttttcaagatgagacttttcacattgcaaaaacgtataacagaaacattcctatgctacttcaaatttgggttatgcaatgtaat |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
12141172 |
gtatacatcttgattttttcaagatgagacttttcacattgcaaaatcgtataacagaaacattcctttgctacttcaaatttgggttatggaatgtaat |
12141271 |
T |
|
| Q |
425 |
aattgacatatatttttcattttcatatggcagtggatcaaaacactcaggagaggaggatgagtagcaggccgaagaaagccaacacaatgttgacagg |
524 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12141272 |
aattgacatatatttttcattttcatatggcagtgcatcaaaacactcaggaaaggaggatgagtagcaggccgaagaaagccaacacaatgttgacagg |
12141371 |
T |
|
| Q |
525 |
tttcgttctgt |
535 |
Q |
| |
|
||||||||||| |
|
|
| T |
12141372 |
tttcgttctgt |
12141382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 332 - 535
Target Start/End: Original strand, 12142231 - 12142432
Alignment:
| Q |
332 |
tcttgattttttcaagatgagacttttcacattgcaaaaacgtataacagaaacattcctatgctacttcaaatttgggttatgcaatgtaataattgac |
431 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| ||| |||||| ||||||| ||| ||||||||||| ||||| | ||||||||||||||| |
|
|
| T |
12142231 |
tcttgattttttcaagatgagacttttcacattgaaaaaacttattacagaatcattcctttgcaacttcaaatttaggttaaggaatgtaataattgac |
12142330 |
T |
|
| Q |
432 |
atatatttttcattttcatatggcagtggatcaaaacactcaggagaggaggatgagtagcaggccgaagaaagccaacacaatgttgacaggtttcgtt |
531 |
Q |
| |
|
| |||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||| ||||| |||||||||| |
|
|
| T |
12142331 |
--aaattttttattttcgcatggcagtggatcaaaacactcagaagaggaggatgagtagcagaacgaagatagccaacacaacgttgaaaggtttcgtt |
12142428 |
T |
|
| Q |
532 |
ctgt |
535 |
Q |
| |
|
|||| |
|
|
| T |
12142429 |
ctgt |
12142432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 12140851 - 12140923
Alignment:
| Q |
4 |
gaaggatgctgctgtctttactgagttgggaactgatgcagcgggtaagagataaaccatcctgttgccattg |
76 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12140851 |
gaaggatgctgctgtctttactgagttgggaactgatgcagcgggtaagagataaaccatcctgttgccattg |
12140923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University