View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12362_high_5 (Length: 441)

Name: NF12362_high_5
Description: NF12362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12362_high_5
NF12362_high_5
[»] chr8 (8 HSPs)
chr8 (18-431)||(5719040-5719453)
chr8 (18-430)||(5686925-5687337)
chr8 (129-285)||(5666062-5666218)
chr8 (339-431)||(5665950-5666042)
chr8 (341-431)||(5652168-5652258)
chr8 (126-217)||(5652558-5652649)
chr8 (341-394)||(5601497-5601550)
chr8 (341-394)||(5639070-5639123)
[»] chr4 (4 HSPs)
chr4 (125-216)||(106141-106232)
chr4 (341-394)||(166763-166816)
chr4 (55-87)||(14964306-14964338)
chr4 (31-71)||(31262910-31262950)
[»] scaffold0013 (1 HSPs)
scaffold0013 (125-217)||(90397-90492)
[»] chr3 (4 HSPs)
chr3 (125-217)||(12135539-12135631)
chr3 (47-105)||(3027073-3027132)
chr3 (36-98)||(48322283-48322345)
chr3 (38-89)||(24313526-24313578)
[»] chr7 (2 HSPs)
chr7 (125-218)||(13054763-13054859)
chr7 (47-99)||(32699337-32699389)
[»] chr2 (3 HSPs)
chr2 (38-99)||(1334963-1335025)
chr2 (31-100)||(25622498-25622568)
chr2 (38-98)||(24389702-24389763)
[»] chr1 (3 HSPs)
chr1 (36-97)||(34861289-34861351)
chr1 (28-69)||(27934796-27934839)
chr1 (61-105)||(52765408-52765452)
[»] chr6 (1 HSPs)
chr6 (47-98)||(13445819-13445871)
[»] chr5 (1 HSPs)
chr5 (43-106)||(23023591-23023654)


Alignment Details
Target: chr8 (Bit Score: 370; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 18 - 431
Target Start/End: Complemental strand, 5719453 - 5719040
Alignment:
Q  18 attgcatggtatatttttaaaataattctttaatttagaatgcttaaagagtgctccgggatactcgttaacgagacccttttttaaatgacatgacaat 117  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  5719453 attgcatggtatatttttaaaataattctttaatttaaaatgcttaaagagtgccccggaatactcgttaacgagacccttttttaaatgacatgacaat 5719354  T
Q  118 gaatgaaaataatgcagatatatgtacctcttgaaggaagccaatcaaatattgtacagacatcatgggctctaatagctttgattcatgctggccaggt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5719353 gaatgaaaataatgcagatatatgtacctcttgaaggaagccaatcaaatattgtacagacatcatgggctctaatagctttgattcatgctggccaggt 5719254  T
Q  218 accttcacctgttattttaaattaaaattcatgctttgtcactatctaactacaaatgaatgttgtgtnnnnnnnnctactaatgaatacataaaaatat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||    
T  5719253 accttcacctgttattttaaattaaaattcatgctttgtcactatctaactacaaatgaatgttgtgtaaaaaaaactactaatgaatacataaaaatat 5719154  T
Q  318 ggttatttctatatatatctgtacaggcggagagagacgctactcctcttcatcgtgctgtaaaattaatcatcaatctccaacaagaggagggtgattg 417  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5719153 ggttatttttatatatatctgtacaggcggagagagacgctactcctcttcatcgtgctgtaaaattaatcatcaatctccaacaagaggagggtgattg 5719054  T
Q  418 gcccccacaggttc 431  Q
    ||||| ||||||||    
T  5719053 gccccaacaggttc 5719040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 18 - 430
Target Start/End: Complemental strand, 5687337 - 5686925
Alignment:
Q  18 attgcatggtatatttttaaaataattctttaatttagaatgcttaaagagtgctccggg-atactcgttaacgagacccttttttaaatgacatgacaa 116  Q
    |||||||||||||| || |||||||||  |||||||| |||||||||||||||  ||||| | |||||||||| ||||||||||| |||||| |||||||    
T  5687337 attgcatggtatatattaaaaataattacttaatttacaatgcttaaagagtgtaccggggacactcgttaacaagaccctttttaaaatgatatgacaa 5687238  T
Q  117 tgaatgaaaataatgcagatatatgtacctcttgaaggaagccaatcaaatattgtacagacatcatgggctctaatagctttgattcatgctggccagg 216  Q
    | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||    
T  5687237 ttaaggaaaataatgcagatatatgtacctcttgaaggaagccaatcaaatattgtacagacagcatgggctctaatggctttgattcatgccggccagg 5687138  T
Q  217 taccttcacctgttattttaaattaaaattcatgctttgtcactatctaactacaaatgaatgttgtgtnnnnnnnnctactaatgaatacataaaaata 316  Q
    ||||||||||||| ||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||        ||||||||||||||||| |||||    
T  5687137 taccttcacctgtcattgtaaattaaaattcatgctttgttactatataactacaaatgaatgttgtgt-aaaaaaactactaatgaatacatataaata 5687039  T
Q  317 tggttatttctatatatatctgtacaggcggagagagacgctactcctcttcatcgtgctgtaaaattaatcatcaatctccaacaagaggagggtgatt 416  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5687038 tggttatttctatatatatctgtacaggcggagagagaccctactcctcttcatcgtgctgtaaaattaatcatcaatctccaacaagaggagggtgatt 5686939  T
Q  417 ggcccccacaggtt 430  Q
    |||||| |||||||    
T  5686938 ggccccaacaggtt 5686925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 129 - 285
Target Start/End: Complemental strand, 5666218 - 5666062
Alignment:
Q  129 atgcagatatatgtacctcttgaaggaagccaatcaaatattgtacagacatcatgggctctaatagctttgattcatgctggccaggtaccttcacctg 228  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||      
T  5666218 atgcagatatatgcacctcttgaaggaagccaatcaaatattgtacagacatcatgggctctaatggctttgattcatgccggccaggtaccttcgccgt 5666119  T
Q  229 ttattttaaattaaaattcatgctttgtcactatctaactacaaatgaatgttgtgt 285  Q
    ||| | |||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  5666118 ttactgtaaattaaaattcatgcttttttactatctaactacaaatgaatgttgtgt 5666062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 339 - 431
Target Start/End: Complemental strand, 5666042 - 5665950
Alignment:
Q  339 tacaggcggagagagacgctactcctcttcatcgtgctgtaaaattaatcatcaatctccaacaagaggagggtgattggcccccacaggttc 431  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||    
T  5666042 tacaggcggagagagacgctactcctcttcatcgtgctgtaaaattaatcatcaatctccaactaaaggagggtgattggccccaacaggttc 5665950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 341 - 431
Target Start/End: Complemental strand, 5652258 - 5652168
Alignment:
Q  341 caggcggagagagacgctactcctcttcatcgtgctgtaaaattaatcatcaatctccaacaagaggagggtgattggcccccacaggttc 431  Q
    |||||||||| |||| | ||| ||||||||||||||| ||||||||||||||||  ||||  ||| |||||||| ||||||| ||||||||    
T  5652258 caggcggagatagacccaactactcttcatcgtgctgcaaaattaatcatcaattcccaattagaagagggtgactggccccaacaggttc 5652168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 126 - 217
Target Start/End: Complemental strand, 5652649 - 5652558
Alignment:
Q  126 ataatgcagatatatgtacctcttgaaggaagccaatcaaatattgtacagacatcatgggctctaatagctttgattcatgctggccaggt 217  Q
    |||||||||| |||||||||||| |||||| | | |||||||||||| || ||  |||||||||| || | ||| |||||||||||||||||    
T  5652649 ataatgcagacatatgtacctctcgaaggaggtcgatcaaatattgttcaaactgcatgggctcttatgggtttaattcatgctggccaggt 5652558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 394
Target Start/End: Original strand, 5601497 - 5601550
Alignment:
Q  341 caggcggagagagacgctactcctcttcatcgtgctgtaaaattaatcatcaat 394  Q
    |||||| ||| |||| ||||||||||||||||||||| ||| ||||| ||||||    
T  5601497 caggcgaagatagaccctactcctcttcatcgtgctgcaaatttaattatcaat 5601550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 394
Target Start/End: Complemental strand, 5639123 - 5639070
Alignment:
Q  341 caggcggagagagacgctactcctcttcatcgtgctgtaaaattaatcatcaat 394  Q
    |||||| ||| |||| ||||||||||||||||||||| ||| ||||| ||||||    
T  5639123 caggcgaagatagaccctactcctcttcatcgtgctgcaaatttaattatcaat 5639070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 125 - 216
Target Start/End: Original strand, 106141 - 106232
Alignment:
Q  125 aataatgcagatatatgtacctcttgaaggaagccaatcaaatattgtacagacatcatgggctctaatagctttgattcatgctggccagg 216  Q
    |||||||||||||||||||||||| |||||||||| ||| ||| ||||||| ||  |||||||||| || | ||| |||||||| |||||||    
T  106141 aataatgcagatatatgtacctctcgaaggaagccgatccaatgttgtacatactgcatgggctcttatgggtttaattcatgccggccagg 106232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 341 - 394
Target Start/End: Original strand, 166763 - 166816
Alignment:
Q  341 caggcggagagagacgctactcctcttcatcgtgctgtaaaattaatcatcaat 394  Q
    ||||| ||||||||| ||||||||||||||||||||| ||||||  ||||||||    
T  166763 caggcagagagagaccctactcctcttcatcgtgctgcaaaattgctcatcaat 166816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 87
Target Start/End: Complemental strand, 14964338 - 14964306
Alignment:
Q  55 gaatgcttaaagagtgctccgggatactcgtta 87  Q
    |||||||||||||||||||||||| ||||||||    
T  14964338 gaatgcttaaagagtgctccgggacactcgtta 14964306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 31262950 - 31262910
Alignment:
Q  31 tttttaaaataattctttaatttagaatgcttaaagagtgc 71  Q
    |||| |||||||||  |||||||||||||||||||||||||    
T  31262950 ttttaaaaataattacttaatttagaatgcttaaagagtgc 31262910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 125 - 217
Target Start/End: Complemental strand, 90492 - 90397
Alignment:
Q  125 aataatgcagatatatgtacctcttgaaggaagcc---aatcaaatattgtacagacatcatgggctctaatagctttgattcatgctggccaggt 217  Q
    |||||||||| ||||||||||||||||||||||||   | |||||| ||||||| ||  |||||||||| || | ||| |||||||||||||||||    
T  90492 aataatgcaggtatatgtacctcttgaaggaagccaggagtcaaatgttgtacaaactgcatgggctcttatgggtttaattcatgctggccaggt 90397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 125 - 217
Target Start/End: Complemental strand, 12135631 - 12135539
Alignment:
Q  125 aataatgcagatatatgtacctcttgaaggaagccaatcaaatattgtacagacatcatgggctctaatagctttgattcatgctggccaggt 217  Q
    |||||||||||||||  ||||||||||||||||   ||||||| ||||||||||  ||||||||||  | | ||| |||||||||||||||||    
T  12135631 aataatgcagatatacatacctcttgaaggaagtagatcaaatcttgtacagactgcatgggctcttctgggtttaattcatgctggccaggt 12135539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 3027073 - 3027132
Alignment:
Q  47 ttaatttagaatgcttaaagagtgctccgg-gatactcgttaacgagacccttttttaaa 105  Q
    |||||||||||||||||||||||||||||| |  |||||||||| |||||||| ||||||    
T  3027073 ttaatttagaatgcttaaagagtgctccggaggcactcgttaacaagacccttatttaaa 3027132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 48322283 - 48322345
Alignment:
Q  36 aaaataattctttaatttagaatgcttaaagagtgctccgggatactcgttaacgagaccctt 98  Q
    |||||||||  ||| ||||||||||||||||||| | || | |||||||||||| ||||||||    
T  48322283 aaaataattacttattttagaatgcttaaagagtacccctgaatactcgttaacaagaccctt 48322345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 24313578 - 24313526
Alignment:
Q  38 aataattctttaatttagaatgcttaaagagtgctccg-ggatactcgttaac 89  Q
    ||||||| |||||||||||||| ||||||||||| ||| ||| ||||||||||    
T  24313578 aataattgtttaatttagaatgtttaaagagtgccccgaggacactcgttaac 24313526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 218
Target Start/End: Original strand, 13054763 - 13054859
Alignment:
Q  125 aataatgcagatatatgtacctcttgaaggaagc---caatcaaatattgtacagacatcatgggctctaatagctttgattcatgctggccaggta 218  Q
    ||||||||||| |||| |||||||||||||||||   ||||||||| ||||||| ||  |||||| ||| ||   ||| ||| ||||||||||||||    
T  13054763 aataatgcagaaatatatacctcttgaaggaagccagcaatcaaatgttgtacaaactgcatggggtctcatgagtttaatttatgctggccaggta 13054859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 32699389 - 32699337
Alignment:
Q  47 ttaatttagaatgcttaaagagtgctccgggatactcgttaacgagacccttt 99  Q
    ||||||||| ||| ||||||||||| || | |||||||||||| |||||||||    
T  32699389 ttaatttagtatgtttaaagagtgccccagaatactcgttaacaagacccttt 32699337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 1334963 - 1335025
Alignment:
Q  38 aataattctttaatttagaatgcttaaagagtgctccgg-gatactcgttaacgagacccttt 99  Q
    ||||||| || ||||| | ||||||||||||||| |||| ||||||||||||| |||||||||    
T  1334963 aataattattaaatttgggatgcttaaagagtgccccggagatactcgttaacaagacccttt 1335025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 100
Target Start/End: Complemental strand, 25622568 - 25622498
Alignment:
Q  31 tttttaaaataattctttaatttagaatgcttaaagagtgctccggga-tactcgttaacgagaccctttt 100  Q
    |||| |||||||||  ||||||||||||| |||||||||||  |||||  |||||||||| ||||||||||    
T  25622568 ttttaaaaataattacttaatttagaatgtttaaagagtgcatcgggagcactcgttaacaagaccctttt 25622498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 24389702 - 24389763
Alignment:
Q  38 aataattctttaatttagaatgcttaaagagtgctccg-ggatactcgttaacgagaccctt 98  Q
    |||||||  ||||||||| ||||||||||||||| ||| ||||||| |||||| ||||||||    
T  24389702 aataattacttaatttagcatgcttaaagagtgccccgtggatacttgttaacaagaccctt 24389763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 34861289 - 34861351
Alignment:
Q  36 aaaataattctttaatttagaatgcttaaagagtg-ctccgggatactcgttaacgagaccct 97  Q
    |||||||||  |||||||||||||||||||||||| | |||||  |||||||||| |||||||    
T  34861289 aaaataattacttaatttagaatgcttaaagagtgcccccggggcactcgttaacaagaccct 34861351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 27934796 - 27934839
Alignment:
Q  28 atatttttaaa--ataattctttaatttagaatgcttaaagagt 69  Q
    |||||||||||  |||||| ||||||||||||||||||||||||    
T  27934796 atatttttaaataataattatttaatttagaatgcttaaagagt 27934839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 52765408 - 52765452
Alignment:
Q  61 ttaaagagtgctccgggatactcgttaacgagacccttttttaaa 105  Q
    |||||||||||||||||  |||||||||||||||| || ||||||    
T  52765408 ttaaagagtgctccggggcactcgttaacgagacctttatttaaa 52765452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 98
Target Start/End: Original strand, 13445819 - 13445871
Alignment:
Q  47 ttaatttagaatgcttaaagagtgctcc-gggatactcgttaacgagaccctt 98  Q
    ||||||||| ||||||||||||||| || |||| |||||||||| ||||||||    
T  13445819 ttaatttagcatgcttaaagagtgcaccggggacactcgttaacaagaccctt 13445871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 106
Target Start/End: Complemental strand, 23023654 - 23023591
Alignment:
Q  43 ttctttaatttagaatgcttaaagagtgctcc-gggatactcgttaacgagacccttttttaaat 106  Q
    |||||||||| |||||||||||||||||| || |||  |||||||||| |||||||| |||||||    
T  23023654 ttctttaatt-agaatgcttaaagagtgccccgggggcactcgttaacaagacccttatttaaat 23023591  T

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