View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12362_high_7 (Length: 344)
Name: NF12362_high_7
Description: NF12362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12362_high_7 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 47472644 - 47472987
Alignment:
| Q |
1 |
agtgtacatagttctactcttgattgatcagtgcacaacgatagaagtatacagagcatactaatttgttcaggcttcagattaacaaataagacgaaat |
100 |
Q |
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| T |
47472644 |
agtgtacatagttctactcttgattgatcagtgcacaacgatagaagtatacagagcatactaatttgttcaggcttcagattaacaaataagacgaaat |
47472743 |
T |
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| Q |
101 |
ctcatatttctgatactgttaggataccagctaagagtagctagcatcaaaggtttttgcaataatactattttcgnnnnnnntatgcatatttttcact |
200 |
Q |
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| T |
47472744 |
ctcatatttctgatactgttaggataccagctaagagtagctagcatcaaaggtttttgcaataatactattttcgaaaaaaatatgcatatttttcact |
47472843 |
T |
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| Q |
201 |
taccgggaataggcacaacatcctttccttgttggagtacccatgctaatgctaactgagcaggagtgcacccatgctttttgccaagactttcgatctt |
300 |
Q |
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| T |
47472844 |
taccgggaataggcacaacatcctttccttgttggagtacccatgctaatgctaactgagcaggagtgcacccatgctttttgccaagactttcgatctt |
47472943 |
T |
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| Q |
301 |
atcatatatgtttttgttcttgttcaagttctcagcttggaagc |
344 |
Q |
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| T |
47472944 |
atcatatatgtttttgttcttgttcaagttctcagcttggaagc |
47472987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 76 - 344
Target Start/End: Original strand, 47475974 - 47476240
Alignment:
| Q |
76 |
ttcagattaacaaataagacgaaatctcatatttctgatactgttaggataccagctaagagtagctagcatcaaaggtttttgcaataatactattttc |
175 |
Q |
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| T |
47475974 |
ttcagattcacaaataagaggaatactcatatttctgatactgttaggataccagttaagagc--ctaccatcaaagatttttatgagaatactgttttc |
47476071 |
T |
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| Q |
176 |
gnnnnnnntatgcatatttt-tcacttaccgggaataggcacaacatcctttccttgttggagtacccatgctaatgctaactgagcaggagtgcaccca |
274 |
Q |
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| | |||||||||| ||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||| ||| |
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| T |
47476072 |
gaaaaat-tgtgcatattttgtcactcaccaggaataggcacaacatccttgccttgttggagtacccatgctaatgctaattgagcagtagtgcatcca |
47476170 |
T |
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| Q |
275 |
tgctttttgccaagactttcgatcttatcatatatgtttttgttcttgttcaagttctcagcttggaagc |
344 |
Q |
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| T |
47476171 |
tgcctcttgctaagactttcaatcctatcatatataaccttgttcttgaccaagttctcagcttggaagc |
47476240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 76 - 344
Target Start/End: Original strand, 24802078 - 24802343
Alignment:
| Q |
76 |
ttcagattaacaaataagacgaaatctcatatttctgatactgttaggataccagctaagagtagctagcatcaaaggtttttgcaataatactattttc |
175 |
Q |
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| T |
24802078 |
ttcagattcacaaataagaggaatactcatatttcttatactgttaggataccacttaagagc--ctaccatcaaagatttttatgataatactgttttc |
24802175 |
T |
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| Q |
176 |
gnnnnnnntatgcatatttt-tcacttaccgggaataggcacaacatcctttccttgttggagtacccatgctaatgctaactgagcaggagtgcaccca |
274 |
Q |
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| T |
24802176 |
gaaaaat-tgtgcatattttgtcactcaccaggaataggcacaacatccttgccttgttggagtacc-atgctaatgctaattgagcagtagtgcatcca |
24802273 |
T |
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| Q |
275 |
tgctttttgccaagactttcgatcttatcatatatgtttttgttcttgttcaagttctcagcttggaagc |
344 |
Q |
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| T |
24802274 |
tgcttcttgctaagactttcaatcctatcatatataaccttgttcttgaccaagttctcagcttggaagc |
24802343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 191 - 344
Target Start/End: Original strand, 47485573 - 47485726
Alignment:
| Q |
191 |
atttttcacttaccgggaataggcacaacatcctttccttgttggagtacccatgctaatgctaactgagcaggagtgcacccatgctttttgccaagac |
290 |
Q |
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|||| ||||| ||| ||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||| || |||| |||| || ||| |||||| |
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| T |
47485573 |
atttgtcactcaccaggaataggcacaacatcatggccttgttggagtatccatgctaatgctaactgagcagaagcgcactcatgtttcttggcaagac |
47485672 |
T |
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| Q |
291 |
tttcgatcttatcatatatgtttttgttcttgttcaagttctcagcttggaagc |
344 |
Q |
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|||| || |||||||| |||||||||||| ||||||||| |||||||||| |
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| T |
47485673 |
tttcaattcgatcatataaacttttgttcttgtccaagttctcggcttggaagc |
47485726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 24801979 - 24802025
Alignment:
| Q |
1 |
agtgtacatagttctactcttgattgatcagtgcacaacgatagaag |
47 |
Q |
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||||||||||||||| |||| |||||||||| |||||||||||||| |
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| T |
24801979 |
agtgtacatagttcttttcttaattgatcagtacacaacgatagaag |
24802025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 47475875 - 47475921
Alignment:
| Q |
1 |
agtgtacatagttctactcttgattgatcagtgcacaacgatagaag |
47 |
Q |
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||||||||||||||| |||| |||||||||| |||||||||||||| |
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| T |
47475875 |
agtgtacatagttcttttcttaattgatcagtacacaacgatagaag |
47475921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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