View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12362_low_13 (Length: 253)
Name: NF12362_low_13
Description: NF12362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12362_low_13 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 8534354 - 8534588
Alignment:
| Q |
19 |
gtaagaaggttgctctgaatttttcaatggatgaaagcatgtcgtgcatctcgaatttagagagaacaactatggttgaacccatagcaagaagccccat |
118 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8534354 |
gtaagaaggttgctctgaatttttcaatcgatgaaagcatgtcgtgcatctcgaatttagagagaacaactatggttgaacccatagcaagaagccccat |
8534453 |
T |
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| Q |
119 |
agcaaacaccgcaagaccgtatatatgaaacatcggaacagtacatatgaaagtttctcttgtctcttgttctttaccgaacctagccattacaacttga |
218 |
Q |
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| T |
8534454 |
agcaaacaccgcaagaccgtatatatgaaacatcggaacagtacatatgaaagtttctcttgtctcttgttctttaccgaacctagccattacaacttga |
8534553 |
T |
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| Q |
219 |
accatcgctattagattcttgtgggaagatactac |
253 |
Q |
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| T |
8534554 |
accatcgctattagattcttgtgggaagatactac |
8534588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 8599593 - 8599827
Alignment:
| Q |
19 |
gtaagaaggttgctctgaatttttcaatggatgaaagcatgtcgtgcatctcgaatttagagagaacaactatggttgaacccatagcaagaagccccat |
118 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8599593 |
gtaagaaggttgctctgaatttttcaatcgatgaaagcatgtcgtgcatctcgaatttagagagaacaactatggttgaacccatagcaagaagccccat |
8599692 |
T |
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| Q |
119 |
agcaaacaccgcaagaccgtatatatgaaacatcggaacagtacatatgaaagtttctcttgtctcttgttctttaccgaacctagccattacaacttga |
218 |
Q |
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| T |
8599693 |
agcaaacaccgcaagaccgtatatatgaaacatcggaacagtacatatgaaagtttctcttgtctcttgttctttaccgaacctagccattacaacttga |
8599792 |
T |
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| Q |
219 |
accatcgctattagattcttgtgggaagatactac |
253 |
Q |
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| T |
8599793 |
accatcgctattagattcttgtgggaagatactac |
8599827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 253
Target Start/End: Complemental strand, 8613833 - 8613599
Alignment:
| Q |
19 |
gtaagaaggttgctctgaatttttcaatggatgaaagcatgtcgtgcatctcgaatttagagagaacaactatggttgaacccatagcaagaagccccat |
118 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8613833 |
gtaagaaggttgctctgaatttttcaatcaatgaaagcatgtcgtgcatctcgaatttagagagaacaactatggttgaacccatagcaagaagccccat |
8613734 |
T |
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| Q |
119 |
agcaaacaccgcaagaccgtatatatgaaacatcggaacagtacatatgaaagtttctcttgtctcttgttctttaccgaacctagccattacaacttga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8613733 |
agcaaacaccgcaagaccgtatatatgaaacatcggaacagtacatatgaaagtttctcttgtctcttgttctttaccgaacctagccattacaacttga |
8613634 |
T |
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| Q |
219 |
accatcgctattagattcttgtgggaagatactac |
253 |
Q |
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| T |
8613633 |
accatcgctattagattcttgtgggaagatactac |
8613599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 169
Target Start/End: Original strand, 14752022 - 14752154
Alignment:
| Q |
34 |
tgaatttttcaatggatgaaagcatgtcgtgcatctcgaatttagagagaacaactatggttgaacccatagcaagaagccccatagcaaacaccgcaag |
133 |
Q |
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|||| ||||||||||||||||||||||| ||||| ||||| || ||||||||||| || |||||||| | || |||||||| ||| |||| || || |
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| T |
14752022 |
tgaacttttcaatggatgaaagcatgtcatgcatttcgaacttggagagaacaacgattgttgaacctaaagagagaagccc---agcgaacattgctag |
14752118 |
T |
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| Q |
134 |
accgtatatatgaaacatcggaacagtacatatgaa |
169 |
Q |
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| T |
14752119 |
accgtatatgtgaaacatgggaattgtgcatatgaa |
14752154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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