View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12362_low_14 (Length: 246)

Name: NF12362_low_14
Description: NF12362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12362_low_14
NF12362_low_14
[»] chr8 (28 HSPs)
chr8 (20-227)||(10678141-10678333)
chr8 (116-227)||(35181516-35181627)
chr8 (116-227)||(34304788-34304899)
chr8 (116-227)||(16603615-16603726)
chr8 (116-227)||(18066707-18066818)
chr8 (117-227)||(16358822-16358933)
chr8 (118-227)||(33629982-33630091)
chr8 (116-215)||(1375542-1375641)
chr8 (118-210)||(20148762-20148854)
chr8 (116-215)||(5754903-5755002)
chr8 (116-215)||(11582766-11582865)
chr8 (116-215)||(29705362-29705461)
chr8 (116-215)||(36743484-36743583)
chr8 (118-215)||(29800951-29801048)
chr8 (118-215)||(42295197-42295294)
chr8 (116-227)||(19386554-19386670)
chr8 (116-215)||(40528635-40528735)
chr8 (118-215)||(26125637-26125734)
chr8 (118-210)||(42699259-42699351)
chr8 (116-215)||(30660743-30660842)
chr8 (124-215)||(31384672-31384763)
chr8 (116-215)||(42197436-42197535)
chr8 (118-203)||(30912575-30912660)
chr8 (116-215)||(2165964-2166063)
chr8 (116-215)||(2546996-2547095)
chr8 (117-204)||(45397317-45397404)
chr8 (118-215)||(3743773-3743870)
chr8 (158-215)||(9241594-9241651)
[»] chr1 (24 HSPs)
chr1 (116-227)||(35003294-35003405)
chr1 (116-227)||(48119628-48119739)
chr1 (116-227)||(44112677-44112788)
chr1 (116-227)||(38113184-38113295)
chr1 (116-227)||(38335918-38336029)
chr1 (116-227)||(45639721-45639832)
chr1 (116-227)||(46168383-46168494)
chr1 (116-227)||(45427734-45427845)
chr1 (116-225)||(41065153-41065262)
chr1 (116-227)||(45705825-45705936)
chr1 (116-227)||(35000102-35000213)
chr1 (116-227)||(26585462-26585573)
chr1 (116-215)||(37814778-37814877)
chr1 (116-215)||(43571087-43571186)
chr1 (118-210)||(2497568-2497660)
chr1 (116-215)||(5489776-5489875)
chr1 (116-215)||(23989524-23989624)
chr1 (116-163)||(14427347-14427394)
chr1 (116-215)||(48498963-48499062)
chr1 (116-215)||(750306-750405)
chr1 (116-215)||(24769500-24769599)
chr1 (118-215)||(7447828-7447924)
chr1 (118-215)||(4401329-4401427)
chr1 (116-204)||(50448272-50448360)
[»] chr3 (25 HSPs)
chr3 (116-227)||(25996268-25996379)
chr3 (116-227)||(9434124-9434235)
chr3 (116-227)||(10457881-10457992)
chr3 (116-224)||(4190257-4190365)
chr3 (116-226)||(51757593-51757703)
chr3 (116-227)||(34791829-34791940)
chr3 (116-227)||(52627966-52628077)
chr3 (116-210)||(45126934-45127028)
chr3 (116-204)||(42100688-42100776)
chr3 (116-215)||(40808865-40808964)
chr3 (116-215)||(46941053-46941152)
chr3 (117-215)||(54237097-54237195)
chr3 (116-215)||(24688403-24688502)
chr3 (116-215)||(25413681-25413780)
chr3 (116-215)||(36150130-36150229)
chr3 (116-215)||(54246149-54246248)
chr3 (117-215)||(40480750-40480848)
chr3 (117-215)||(42394420-42394518)
chr3 (118-215)||(27748565-27748662)
chr3 (118-215)||(53581859-53581956)
chr3 (116-216)||(53273684-53273784)
chr3 (116-215)||(47191027-47191125)
chr3 (120-201)||(29558249-29558330)
chr3 (131-215)||(51249323-51249407)
chr3 (158-215)||(52629870-52629927)
[»] chr6 (18 HSPs)
chr6 (116-227)||(33242403-33242514)
chr6 (118-227)||(27441544-27441653)
chr6 (116-227)||(33253913-33254025)
chr6 (116-215)||(3213400-3213499)
chr6 (116-215)||(13743222-13743321)
chr6 (116-215)||(13748722-13748821)
chr6 (118-210)||(24203993-24204085)
chr6 (116-215)||(7273336-7273435)
chr6 (116-215)||(9698334-9698433)
chr6 (116-215)||(26670010-26670109)
chr6 (116-227)||(31109211-31109322)
chr6 (116-215)||(21293678-21293777)
chr6 (116-215)||(26466799-26466898)
chr6 (116-215)||(30014343-30014442)
chr6 (116-215)||(7292747-7292846)
chr6 (116-215)||(21279929-21280028)
chr6 (116-210)||(7367549-7367643)
chr6 (118-215)||(30735984-30736081)
[»] chr4 (37 HSPs)
chr4 (116-227)||(17619141-17619252)
chr4 (116-227)||(32728357-32728468)
chr4 (116-227)||(55272365-55272476)
chr4 (116-226)||(711960-712070)
chr4 (116-224)||(960862-960970)
chr4 (116-227)||(48435568-48435679)
chr4 (118-227)||(35037007-35037116)
chr4 (118-221)||(3756242-3756344)
chr4 (116-223)||(46827699-46827806)
chr4 (118-227)||(38851515-38851624)
chr4 (149-224)||(19879987-19880062)
chr4 (116-203)||(28982835-28982922)
chr4 (116-215)||(28988473-28988572)
chr4 (158-227)||(36004105-36004174)
chr4 (116-215)||(23035980-23036079)
chr4 (116-215)||(33703141-33703240)
chr4 (116-210)||(27864564-27864658)
chr4 (118-215)||(27893843-27893940)
chr4 (116-204)||(1771278-1771366)
chr4 (116-204)||(55966358-55966446)
chr4 (116-196)||(49229684-49229764)
chr4 (116-215)||(25051693-25051792)
chr4 (116-215)||(27316714-27316813)
chr4 (116-215)||(27550309-27550408)
chr4 (117-215)||(41878407-41878505)
chr4 (116-210)||(48463456-48463550)
chr4 (118-215)||(31680904-31681001)
chr4 (118-215)||(41327544-41327641)
chr4 (116-215)||(35017733-35017831)
chr4 (116-215)||(41847971-41848070)
chr4 (116-215)||(45490314-45490413)
chr4 (118-204)||(43514698-43514784)
chr4 (118-215)||(43949802-43949900)
chr4 (116-215)||(12496956-12497055)
chr4 (118-215)||(39631102-39631200)
chr4 (119-215)||(23204779-23204875)
chr4 (116-152)||(36004168-36004204)
[»] chr2 (31 HSPs)
chr2 (116-227)||(43114557-43114668)
chr2 (118-227)||(11825643-11825752)
chr2 (118-227)||(41281963-41282072)
chr2 (116-224)||(18491705-18491813)
chr2 (116-223)||(966827-966934)
chr2 (116-227)||(12415449-12415560)
chr2 (116-227)||(12427509-12427620)
chr2 (116-222)||(16803968-16804074)
chr2 (116-222)||(16843250-16843356)
chr2 (118-227)||(4299409-4299518)
chr2 (116-227)||(14285676-14285787)
chr2 (116-227)||(34895730-34895841)
chr2 (117-215)||(34817777-34817875)
chr2 (134-227)||(12531652-12531744)
chr2 (116-215)||(1750414-1750513)
chr2 (140-227)||(4451939-4452026)
chr2 (116-215)||(4764727-4764826)
chr2 (118-201)||(6518484-6518566)
chr2 (116-215)||(30838632-30838731)
chr2 (116-215)||(12302254-12302353)
chr2 (116-215)||(13780736-13780835)
chr2 (116-215)||(16096747-16096846)
chr2 (117-215)||(19047158-19047256)
chr2 (118-215)||(43490402-43490499)
chr2 (118-204)||(7070418-7070504)
chr2 (118-212)||(8896587-8896681)
chr2 (116-215)||(43335764-43335863)
chr2 (118-195)||(33229303-33229381)
chr2 (116-212)||(42026767-42026865)
chr2 (158-210)||(42849864-42849916)
chr2 (116-152)||(42849910-42849946)
[»] scaffold0003 (1 HSPs)
scaffold0003 (118-227)||(45708-45817)
[»] chr7 (28 HSPs)
chr7 (116-227)||(31513287-31513398)
chr7 (116-227)||(40236919-40237030)
chr7 (117-227)||(31408622-31408732)
chr7 (116-227)||(27535220-27535331)
chr7 (116-227)||(33384870-33384982)
chr7 (118-215)||(4638200-4638297)
chr7 (118-215)||(10573751-10573848)
chr7 (118-210)||(44326180-44326272)
chr7 (116-215)||(5810925-5811024)
chr7 (116-215)||(24001013-24001112)
chr7 (116-215)||(42538432-42538531)
chr7 (116-215)||(5194232-5194331)
chr7 (116-215)||(35069721-35069820)
chr7 (118-215)||(43343625-43343722)
chr7 (118-215)||(44416935-44417032)
chr7 (116-215)||(5015395-5015494)
chr7 (116-215)||(24280597-24280696)
chr7 (119-210)||(26898408-26898499)
chr7 (116-215)||(45326020-45326119)
chr7 (116-215)||(41861674-41861775)
chr7 (116-204)||(42972852-42972940)
chr7 (116-183)||(39998408-39998475)
chr7 (125-215)||(32029818-32029908)
chr7 (118-215)||(16180358-16180454)
chr7 (116-204)||(9216302-9216389)
chr7 (116-215)||(43317443-43317542)
chr7 (132-215)||(27393261-27393344)
chr7 (154-215)||(38160580-38160641)
[»] chr5 (13 HSPs)
chr5 (116-227)||(17208074-17208185)
chr5 (116-227)||(32473383-32473494)
chr5 (116-230)||(30622705-30622818)
chr5 (116-215)||(7617133-7617232)
chr5 (116-215)||(2614650-2614749)
chr5 (116-215)||(22512305-22512404)
chr5 (116-215)||(38470579-38470678)
chr5 (116-215)||(41334664-41334763)
chr5 (118-215)||(5256997-5257094)
chr5 (116-215)||(18033982-18034081)
chr5 (116-188)||(33855071-33855143)
chr5 (116-215)||(33801469-33801568)
chr5 (118-173)||(25915030-25915085)
[»] scaffold0100 (1 HSPs)
scaffold0100 (116-227)||(35445-35556)
[»] scaffold0385 (1 HSPs)
scaffold0385 (116-215)||(11251-11350)
[»] scaffold0119 (1 HSPs)
scaffold0119 (116-215)||(685-784)
[»] scaffold0038 (1 HSPs)
scaffold0038 (117-215)||(112656-112754)
[»] scaffold0187 (2 HSPs)
scaffold0187 (116-215)||(14189-14288)
scaffold0187 (116-215)||(24517-24616)
[»] scaffold0157 (1 HSPs)
scaffold0157 (116-215)||(23422-23521)


Alignment Details
Target: chr8 (Bit Score: 113; Significance: 2e-57; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 20 - 227
Target Start/End: Complemental strand, 10678333 - 10678141
Alignment:
Q  20 cttctcacatcttcttgcattgtgatgtggtgtttaaggtttggctaaaggtgttcaggcggcttaatttgtaattacaacnnnnnnnnnnnnnnnggaa 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               ||||    
T  10678333 cttctcacatcttcttgcattgtgatgtggtgtttaaggtttggctaaaggtgttcaggcggcttaatttgtaattacaac---caacaaaaaaaaggaa 10678237  T
Q  120 aatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctttcat 219  Q
    ||||||||||||| ||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10678236 aatgttacatgaataccctttaatca------------tacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctttcat 10678149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 116 - 227
Target Start/End: Original strand, 35181516 - 35181627
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||| ||||||||||||||||||||||||||    
T  35181516 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctctt 35181615  T
Q  216 tcatctcctctc 227  Q
    ||||||||||||    
T  35181616 tcatctcctctc 35181627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 116 - 227
Target Start/End: Original strand, 34304788 - 34304899
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||| |||||||||||||| ||||||||||||||||||||||||||    
T  34304788 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctctt 34304887  T
Q  216 tcatctcctctc 227  Q
    ||||||||||||    
T  34304888 tcatctcctctc 34304899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 116 - 227
Target Start/End: Complemental strand, 16603726 - 16603615
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||||||| |||||||||||||||||||| |||| ||||||||||  ||||| |||||||||||||||||||||||||||||||||| |||||    
T  16603726 ggaaaatgttacatgcacaccctttaatcatacaccttattatacaccccatgcattaaagacattttggtaaattcatctcacaaccatacttactctt 16603627  T
Q  216 tcatctcctctc 227  Q
    ||||||||||||    
T  16603626 tcatctcctctc 16603615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 116 - 227
Target Start/End: Complemental strand, 18066818 - 18066707
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||||||||||||||||||||||||||  |||||||||| ||||| ||||| ||| ||||| |||| ||||||||||||||||||||||||||    
T  18066818 ggaaaatgttacatgaacaccctttaatcatacattctattgtacatcccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 18066719  T
Q  216 tcatctcctctc 227  Q
    ||||||||||||    
T  18066718 tcatctcctctc 18066707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 117 - 227
Target Start/End: Complemental strand, 16358933 - 16358822
Alignment:
Q  117 gaaaatgttacat-gaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||| |||||  |||||| | |||||| ||||||||||||||||||||||||||| ||    
T  16358933 gaaaatgttacattgaagaccctttaatcatacaccctattgtacatcccatgcattaagaatattttgataaattcatctcacaaccatactttctttt 16358834  T
Q  216 tcatctcctctc 227  Q
    ||||||||||||    
T  16358833 tcatctcctctc 16358822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 118 - 227
Target Start/End: Complemental strand, 33630091 - 33629982
Alignment:
Q  118 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctttc 217  Q
    ||||||||||| ||||||||||||||||||||||  ||||||||||| ||  |||| ||||||||| |||| ||||||||||||| ||||||||||||||    
T  33630091 aaaatgttacacgaacaccctttaatcatacacctcattgtacaccctatgcattagggacattttagtaatttcatctcacaactatactttctctttc 33629992  T
Q  218 atctcctctc 227  Q
    ||||||||||    
T  33629991 atctcctctc 33629982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 1375542 - 1375641
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||| ||||||||||||| |||| |||||||||| |||||||||||||||||||| ||| ||||||||||||| |||||||||| | ||||| ||||    
T  1375542 ggaaaattttacatgaacaccttttattcatacacccaattgtacaccccatatattagggatattttggtaaatttatctcacaactacactttatctt 1375641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 118 - 210
Target Start/End: Original strand, 20148762 - 20148854
Alignment:
Q  118 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatacttt 210  Q
    |||||||||||| ||||||||||| ||||||| || |||||||||| ||||||||| ||| |||||||||| ||||||||||||||| |||||    
T  20148762 aaaatgttacataaacaccctttattcatacatcccattgtacacctcatatattagggatattttggtaagttcatctcacaaccacacttt 20148854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 5754903 - 5755002
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||||||||||||| |||| || |||| || |||||||| ||||||||||| ||| |||||||||| ||||||||||||||| ||||| ||||    
T  5754903 ggaaaatgttacatgaacaccttttattcctacatcccattgtacatcccatatattagggatattttggtaagttcatctcacaaccacactttatctt 5755002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 11582766 - 11582865
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||||||||| || |||| || ||||||||||| || ||||| ||| |||||||||| ||||||||||||||| ||||| ||||    
T  11582766 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 11582865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 29705362 - 29705461
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||||||||| |  ||||||| |||||||||||||| ||||| ||| |||||| ||| ||||||||||||||| ||||| ||||    
T  29705362 ggaaaatgttacatgaacaccctttatttctacaccccattgtacaccccatgtattagggatattttgataagttcatctcacaaccacactttatctt 29705461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 215
Target Start/End: Complemental strand, 36743583 - 36743484
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||||||||| || |||| || ||||||||||| || ||||| ||| |||||||||| ||||||||||||||| ||||| ||||    
T  36743583 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 36743484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 118 - 215
Target Start/End: Complemental strand, 29801048 - 29800951
Alignment:
Q  118 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||| |||||| |||| ||||||| || |||||||||||||| ||||| ||| |||||||||| ||||||||||||||| ||||| ||||    
T  29801048 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatctt 29800951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 118 - 215
Target Start/End: Original strand, 42295197 - 42295294
Alignment:
Q  118 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||||||| || ||||||  ||||||||| |||| ||||| ||| |||||||||| ||||||||||||||| ||||| ||||    
T  42295197 aaaatgttacatgaacaccctttattcctacacctcattgtacactccatgtattagggatattttggtaagttcatctcacaaccacactttatctt 42295294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 116 - 227
Target Start/End: Complemental strand, 19386670 - 19386554
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccc-----catatattaaggacattttggtaaattcatctcacaaccatacttt 210  Q
    ||||||||||||||||||||||||||||||||||||||||| |||   |     |||  |||||| |  ||||| ||||||||||||||||| |||||||    
T  19386670 ggaaaatgttacatgaacaccctttaatcatacaccctattatactttctctttcatgcattaagaatgttttgataaattcatctcacaactatacttt 19386571  T
Q  211 ctctttcatctcctctc 227  Q
    |||||||||||||||||    
T  19386570 ctctttcatctcctctc 19386554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 116 - 215
Target Start/End: Complemental strand, 40528735 - 40528635
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaat-catacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctct 214  Q
    |||||||  |||||||||||||||| || || | |||| |||||||||||||||||||| |||||||||| |||||| |||||||||||| |||||||||    
T  40528735 ggaaaataatacatgaacacccttttattcacaaaccccattgtacaccccatatattagggacattttgataaatttatctcacaaccacactttctct 40528636  T
Q  215 t 215  Q
    |    
T  40528635 t 40528635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 118 - 215
Target Start/End: Original strand, 26125637 - 26125734
Alignment:
Q  118 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||| ||||||||||| |||||||  | ||||||||||| || ||||| ||| |||||||||| ||||||||||||||| ||||| ||||    
T  26125637 aaaatgttacataaacaccctttattcatacattccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 26125734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 118 - 210
Target Start/End: Original strand, 42699259 - 42699351
Alignment:
Q  118 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatacttt 210  Q
    |||||||||||||||||||||||| || ||||||| ||||||||||  || ||||| ||| ||||| |||| ||||||||||||||| |||||    
T  42699259 aaaatgttacatgaacaccctttattcctacaccccattgtacaccttatgtattatggatatttttgtaagttcatctcacaaccacacttt 42699351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 215
Target Start/End: Complemental strand, 30660842 - 30660743
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||||||||| |  |||| || ||||||||||| || ||||| ||| |||||||||| ||||||| ||||||| ||||| ||||    
T  30660842 ggaaaatgttacatgaacaccctttatttctacatcccattgtacaccctatgtattagggatattttggtaagttcatcttacaaccacactttatctt 30660743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 124 - 215
Target Start/End: Original strand, 31384672 - 31384763
Alignment:
Q  124 ttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||| || ||||  |||||||||||||||| ||||| | | |||||||||| ||||||||||||||| ||||| ||||    
T  31384672 ttacatgaacaccctttattcttacattctattgtacaccccatgtattaggaatattttggtaagttcatctcacaaccacactttatctt 31384763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 215
Target Start/End: Complemental strand, 42197535 - 42197436
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||||||||||||| |||| || ||||||| |||| |||| | || ||||| ||| |||||||||| ||||||||||||||| ||||| ||||    
T  42197535 ggaaaatgttacatgaacaccatttattcctacaccccattgcacacactatgtattagggatattttggtaagttcatctcacaaccacactttatctt 42197436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 118 - 203
Target Start/End: Complemental strand, 30912660 - 30912575
Alignment:
Q  118 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaacc 203  Q
    |||||||||||||||||||||||| || ||||||| |||||||||  ||| ||||| ||  |||||||||| ||||||||||||||    
T  30912660 aaaatgttacatgaacaccctttattcctacaccccattgtacacttcatgtattaggggtattttggtaagttcatctcacaacc 30912575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 215
Target Start/End: Complemental strand, 2166063 - 2165964
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||| ||||||||||||| |||| || ||||||| |||||| ||||||| |||||  || |||||||||| ||||||||| ||||| ||||| ||||    
T  2166063 ggaaaatattacatgaacaccatttattcctacaccccattgtataccccatgtattagagatattttggtaagttcatctcataaccacactttatctt 2165964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 2546996 - 2547095
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||| ||||| |  ||||| | |||||||||| ||| ||||| ||| ||||| |||| ||||||||||||||| ||||| ||||    
T  2546996 ggaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttagtaagttcatctcacaaccacactttatctt 2547095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 204
Target Start/End: Original strand, 45397317 - 45397404
Alignment:
Q  117 gaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaacca 204  Q
    ||||||||||| ||||||||||||| || ||||||| ||| ||||||| || ||||| ||| ||||| |||| |||||||||||||||    
T  45397317 gaaaatgttacgtgaacaccctttattcctacaccccattctacaccctatgtattagggatatttttgtaagttcatctcacaacca 45397404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 215
Target Start/End: Original strand, 3743773 - 3743870
Alignment:
Q  118 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||| |||  |||||||||| |||| |  || ||| |||||||||||||||||| | |||||| ||| ||||||||||||||| ||||| ||||    
T  3743773 aaaatgttccatatacaccctttattcatccctcccattatacaccccatatattaagtatattttgataagttcatctcacaaccacactttatctt 3743870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 215
Target Start/End: Original strand, 9241594 - 9241651
Alignment:
Q  158 tacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||| |||||||| ||| ||||| |||| ||||||||||||||| ||||| ||||    
T  9241594 tacaccctatatattagggatatttttgtaagttcatctcacaaccacactttatctt 9241651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 6e-52; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 116 - 227
Target Start/End: Original strand, 35003294 - 35003405
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  35003294 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatacattaaggatattttggtaaattcatctcacaaccatactttctctt 35003393  T
Q  216 tcatctcctctc 227  Q
    ||||||||||||    
T  35003394 tcatctcctctc 35003405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 116 - 227
Target Start/End: Original strand, 48119628 - 48119739
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||    
T  48119628 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaattcatctcacaaccatactttctctt 48119727  T
Q  216 tcatctcctctc 227  Q
    ||||||||||||    
T  48119728 tcatctcctctc 48119739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 116 - 227
Target Start/End: Original strand, 44112677 - 44112788
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||| ||||||||||||||||||||||||||    
T  44112677 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctctt 44112776  T
Q  216 tcatctcctctc 227  Q
    ||||||||||||    
T  44112777 tcatctcctctc 44112788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 116 - 227
Target Start/End: Complemental strand, 38113295 - 38113184
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||| |||||    
T  38113295 ggaaaatgttatatgaacaccctttaatcatacaccctattgtacaccccatgcattaatgacattttggtaaattcatctcacaaccatacttactctt 38113196  T
Q  216 tcatctcctctc 227  Q
    ||||||||||||    
T  38113195 tcatctcctctc 38113184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 116 - 227
Target Start/End: Original strand, 38335918 - 38336029
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| |||||  |||||||| |||||||||||||||||||||||||||||||||||||    
T  38335918 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacatcccatgcattaaggatattttggtaaattcatctcacaaccatactttctctt 38336017  T
Q  216 tcatctcctctc 227  Q
    ||||||||||||    
T  38336018 tcatctcctctc 38336029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 116 - 227
Target Start/End: Complemental strand, 45639832 - 45639721
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||    
T  45639832 ggaaaatgttacatgaacactctttaatcatacatcctattgtacaccccatacattaaggatattttggtaaattcatctcacaatcatactttctctt 45639733  T
Q  216 tcatctcctctc 227  Q
    ||||||||||||    
T  45639732 tcatctcctctc 45639721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 116 - 227
Target Start/End: Original strand, 46168383 - 46168494
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||| ||  |||||||| |||||||||||||||||||||||||||||||||||||    
T  46168383 ggaaaatgttacatgaacaccctttaatcatatatcctattgtacacccaatgcattaaggatattttggtaaattcatctcacaaccatactttctctt 46168482  T
Q  216 tcatctcctctc 227  Q
    ||||||||||||    
T  46168483 tcatctcctctc 46168494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 116 - 227
Target Start/End: Complemental strand, 45427845 - 45427734
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||| ||||  |||| |||||||||||||| ||||||||||||||||||||||||||    
T  45427845 ggaaaatgttacatgaataccttttaatcatacaccctattgtacactccatgcattagggacattttggtaatttcatctcacaaccatactttctctt 45427746  T
Q  216 tcatctcctctc 227  Q
    ||||||||||||    
T  45427745 tcatctcctctc 45427734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 116 - 225
Target Start/End: Original strand, 41065153 - 41065262
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||  |||| || ||||||||||| ||||||||||||||||||||||||||    
T  41065153 ggaaaatgttacatgaacaccctttaatcatacaccctgttgtacaccccatgcattaggggcattttggtaatttcatctcacaaccatactttctctt 41065252  T
Q  216 tcatctcctc 225  Q
    || |||||||    
T  41065253 tcctctcctc 41065262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 116 - 227
Target Start/End: Original strand, 45705825 - 45705936
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||| ||||||||||||||||||||||  ||||||||||| ||||  |||| |||||||||| ||||||||||||||||||||||||||||||    
T  45705825 ggaaaatgttatatgaacaccctttaatcatacattctattgtacactccatgcattatggacattttgataaattcatctcacaaccatactttctctt 45705924  T
Q  216 tcatctcctctc 227  Q
    ||||||||||||    
T  45705925 tcatctcctctc 45705936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 116 - 227
Target Start/End: Complemental strand, 35000213 - 35000102
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||||||||||||| ||||||||||||| |||||||| ||  ||| ||||| |||||||||| |||||| |||||||||||||||||||||||    
T  35000213 ggaaaatgttacatgaacaccttttaatcatacactctattgtatacttcatgtattagggacattttgataaatttatctcacaaccatactttctctt 35000114  T
Q  216 tcatctcctctc 227  Q
    ||||||||||||    
T  35000113 tcatctcctctc 35000102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 116 - 227
Target Start/End: Original strand, 26585462 - 26585573
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||| |||||||  ||||||||||||||  |||||||||||||||  |||||||| ||||| ||||||||||||| ||| |||||||||||||    
T  26585462 ggaaaatgttagatgaacattctttaatcatacactatattgtacaccccatgcattaaggatattttagtaaattcatctcgcaatcatactttctctt 26585561  T
Q  216 tcatctcctctc 227  Q
    ||||||||||||    
T  26585562 tcatctcctctc 26585573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 37814778 - 37814877
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||| ||||||||||| ||||||| |  |||||||||||||| ||||||||| |||||||||||||||| ||||||||| ||||| ||||    
T  37814778 ggaaaatgttacataaacaccctttattcatacatctcattgtacaccccatgtattaaggatattttggtaaattcatttcacaaccacactttatctt 37814877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 116 - 215
Target Start/End: Complemental strand, 43571186 - 43571087
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||||||||| || ||||||  |||||||||||||| ||||| ||| |||||||||| ||||||||||||||| ||||| ||||    
T  43571186 ggaaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatctt 43571087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 118 - 210
Target Start/End: Complemental strand, 2497660 - 2497568
Alignment:
Q  118 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatacttt 210  Q
    |||||||||||| |||||| |||| |||||||  | |||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||    
T  2497660 aaaatgttacataaacaccatttattcatacattccattgtacaccccatatattaaggatattttggtaagttcatctcacaaccacacttt 2497568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 5489776 - 5489875
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||||||||| || |||| || ||||||||||| || ||||| ||| |||||||||| ||||||||||||||| ||||| ||||    
T  5489776 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 5489875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 215
Target Start/End: Complemental strand, 23989624 - 23989524
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaat-catacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctct 214  Q
    ||||||||||||||||||||||||| || ||||||| | |||||| |||| || ||||| ||| ||||||||||||| |||||||||||| ||||| |||    
T  23989624 ggaaaatgttacatgaacacccttttattcatacactcaattgtataccctatgtattagggatattttggtaaatttatctcacaaccacactttatct 23989525  T
Q  215 t 215  Q
    |    
T  23989524 t 23989524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 163
Target Start/End: Original strand, 14427347 - 14427394
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacacc 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14427347 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacacc 14427394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 215
Target Start/End: Complemental strand, 48499062 - 48498963
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||| ||||| |  ||||| | |||||||||| ||| ||||| ||| |||||||||| ||||||||||||||| ||||| ||||    
T  48499062 ggaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatctcacaaccacactttatctt 48498963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 215
Target Start/End: Complemental strand, 750405 - 750306
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||| |||||||||||   || ||||||| |||||||||||||| ||| | ||| |||||| ||||||||||||| ||||| ||||| ||||    
T  750405 ggaaaatgttacgtgaacacccttatttcctacaccccattgtacaccccatgtatcagggatattttgataaattcatctcaaaaccacactttatctt 750306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 215
Target Start/End: Complemental strand, 24769599 - 24769500
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||| |||||||||| |||| |  ||||| | |||||||||||||| ||||| ||| |||||||||| ||| | ||||||||| ||||| ||||    
T  24769599 ggaaaatgtttcatgaacaccttttatttctacactccattgtacaccccatgtattagggatattttggtaagttcttatcacaaccacactttatctt 24769500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 215
Target Start/End: Original strand, 7447828 - 7447924
Alignment:
Q  118 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||||||||| |||||| || |||| || |||||||| ||||| |||||  || |||||| ||| ||||||||||||||| ||||| ||||    
T  7447828 aaaatgttacatgaacatcctttattcctacatcccattgtaca-cccatgtattacagatattttgataagttcatctcacaaccacactttatctt 7447924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 118 - 215
Target Start/End: Original strand, 4401329 - 4401427
Alignment:
Q  118 aaaatgttacatgaacaccctttaat-catacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||| ||||||||||| |||| || | |||||   |||||||||||||| |||||  || |||||||||| ||||||||||||||| ||||| ||||    
T  4401329 aaaatgatacatgaacactcttttattcctacacttcattgtacaccccatgtattagagatattttggtaagttcatctcacaaccacactttatctt 4401427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 204
Target Start/End: Complemental strand, 50448360 - 50448272
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaacca 204  Q
    |||||||||||||||||||| ||||| |  ||||| | ||||||||||  || ||||| ||| ||||| |||| ||||||| |||||||    
T  50448360 ggaaaatgttacatgaacactctttatttctacactccattgtacaccttatgtattagggatatttttgtaagttcatcttacaacca 50448272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 116 - 227
Target Start/End: Original strand, 25996268 - 25996379
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  25996268 ggaaaatgttacatgaacaccctttaatcatacatcttattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatattttctctt 25996367  T
Q  216 tcatctcctctc 227  Q
    ||||||||||||    
T  25996368 tcatctcctctc 25996379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 116 - 227
Target Start/End: Original strand, 9434124 - 9434235
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||| |||||||||||||| ||||||||||||||||||||||||||    
T  9434124 ggaaaatgttacatgaacaccctttaatcatacactctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctctt 9434223  T
Q  216 tcatctcctctc 227  Q
    ||||||||||||    
T  9434224 tcatctcctctc 9434235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 116 - 227
Target Start/End: Complemental strand, 10457992 - 10457881
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||| ||||||||||||| |||||||||||||||||||||||    
T  10457992 ggaaaatgttacatgaacaccttttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaatttatctcacaaccatactttctctt 10457893  T
Q  216 tcatctcctctc 227  Q
    ||||||||||||    
T  10457892 tcatctcctctc 10457881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 116 - 224
Target Start/End: Complemental strand, 4190365 - 4190257
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  || |||||  || |||||||||||||||||||||||||||||||||||||    
T  4190365 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccttatgtattagagatattttggtaaattcatctcacaaccatactttctctt 4190266  T
Q  216 tcatctcct 224  Q
    |||||||||    
T  4190265 tcatctcct 4190257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 116 - 226
Target Start/End: Original strand, 51757593 - 51757703
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||| |||  |||| ||||||||| |||| ||||||||||||||||||||||||||    
T  51757593 ggaaaatattacataaacaccctttaatcatacaccctattgtacacctcatgcattatggacattttagtaatttcatctcacaaccatactttctctt 51757692  T
Q  216 tcatctcctct 226  Q
    |||||||||||    
T  51757693 tcatctcctct 51757703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 116 - 227
Target Start/End: Original strand, 34791829 - 34791940
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||| |||  |||| |||||||||  ||| ||||||||||||||||||||||||||    
T  34791829 ggaaaatgttacatgaacaccctttaatcatacaccatattgtaaacctcatgcattagggacattttaataatttcatctcacaaccatactttctctt 34791928  T
Q  216 tcatctcctctc 227  Q
    ||||||||||||    
T  34791929 tcatctcctctc 34791940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 116 - 227
Target Start/End: Complemental strand, 52628077 - 52627966
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||||| |||  |||||| | ||||||||||||||||||||||| |||||||||||||    
T  52628077 ggaaaatgttacgtgaacaccctttaatcatacatcctattgtacacctcatgcattaagtatattttggtaaattcatctcacaatcatactttctctt 52627978  T
Q  216 tcatctcctctc 227  Q
    |||||| |||||    
T  52627977 tcatcttctctc 52627966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 116 - 210
Target Start/End: Complemental strand, 45127028 - 45126934
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatacttt 210  Q
    |||||||||||||| ||||||||||| ||||||| || |||||||||||||| ||||| ||| |||||||||| ||||||||||||||| |||||    
T  45127028 ggaaaatgttacataaacaccctttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacacttt 45126934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 116 - 204
Target Start/End: Original strand, 42100688 - 42100776
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaacca 204  Q
    |||||||||||||||||||||||||| || ||||||  |||||||||||||| ||||| ||| |||||||||| |||||||||||||||    
T  42100688 ggaaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatctcacaacca 42100776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 40808865 - 40808964
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||| |||||| |||| || ||||||| |||||||||||||| ||||| ||| |||||||||| ||||||||||||||| ||||| ||||    
T  40808865 ggaaaatgttacatcaacaccatttattcctacaccccattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatctt 40808964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 46941053 - 46941152
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||||||||| || |||| |  |||||||||||||| ||||| ||| |||||||||| ||||||||||||||| ||||| ||||    
T  46941053 ggaaaatgttacatgaacaccctttattcctacatctcattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatctt 46941152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 117 - 215
Target Start/End: Original strand, 54237097 - 54237195
Alignment:
Q  117 gaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||||||||||||||||| || |||| || ||||||||||| || ||||| ||| |||||||||| ||||||||||||||| ||||| ||||    
T  54237097 gaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 54237195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 116 - 215
Target Start/End: Complemental strand, 24688502 - 24688403
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||||||||| |  ||||| | ||||||||||| || ||||| ||| |||||||||| ||||||||||||||| ||||| ||||    
T  24688502 ggaaaatgttacatgaacaccctttatttctacactccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 24688403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 25413681 - 25413780
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||||||||| || ||||||| ||||||||||  || ||||| ||| ||||| |||| ||||||||||||||| ||||| ||||    
T  25413681 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccttatgtattagggatatttttgtaagttcatctcacaaccacactttatctt 25413780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 36150130 - 36150229
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||||||||| |||||||| |||||||||| ||| ||||||| || ||| | ||| |||||||||| ||||||||||||||| ||||| ||||    
T  36150130 ggaaaatgttacatgaataccctttattcatacaccccattatacaccctatgtatcagggatattttggtaagttcatctcacaaccacactttatctt 36150229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 116 - 215
Target Start/End: Complemental strand, 54246248 - 54246149
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||||||||| || ||||||| ||||||||||| || |||||  || ||||| |||| ||||||||||||||| ||||| ||||    
T  54246248 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccctatgtattagagatatttttgtaagttcatctcacaaccacactttatctt 54246149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 117 - 215
Target Start/End: Original strand, 40480750 - 40480848
Alignment:
Q  117 gaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||||||||||||||||| |||||  ||| |||||||| || || ||||| ||| |||||||||| ||||||||||||||| ||||| ||||    
T  40480750 gaaaatgttacatgaacaccctttattcatatgccccattgtacatcctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 40480848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 117 - 215
Target Start/End: Complemental strand, 42394518 - 42394420
Alignment:
Q  117 gaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||||||||||||||||| || ||||  | ||||||||||| || ||||| ||| |||||||||| ||||||||||||||| ||||| ||||    
T  42394518 gaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 42394420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 118 - 215
Target Start/End: Original strand, 27748565 - 27748662
Alignment:
Q  118 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||||||||||| |||| |||||||||  ||| ||||||  || ||||| ||| |||||||||| ||||||||||||| ||||||| ||||    
T  27748565 aaaatgttacatgaacaccttttattcatacacctcattatacaccttatgtattagggatattttggtaagttcatctcacaacaatactttatctt 27748662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 118 - 215
Target Start/End: Complemental strand, 53581956 - 53581859
Alignment:
Q  118 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||| ||||| |||||||| | |||||||| || || ||||| ||| |||||| ||| ||||||||||||||| ||||| ||||    
T  53581956 aaaatgttacatgaacactctttattcatacactccattgtacatcctatgtattagggatattttgataagttcatctcacaaccacactttatctt 53581859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 116 - 216
Target Start/End: Complemental strand, 53273784 - 53273684
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||| ||||||| | |||| || || |||  |||||||| ||||| ||||| ||| |||||||||| ||||||||||||||||||||| ||||    
T  53273784 ggaaaatgttatatgaacatcatttattcctatacctcattgtacatcccatgtattagggatattttggtaagttcatctcacaaccatactttatctt 53273685  T
Q  216 t 216  Q
    |    
T  53273684 t 53273684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 215
Target Start/End: Complemental strand, 47191125 - 47191027
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||||||||| || ||||||  |||||||| ||||| |||||  || |||||| ||| ||||||||||||||| ||||| ||||    
T  47191125 ggaaaatgttacatgaacaccctttattcctacacctcattgtaca-cccatgtattagagatattttgataagttcatctcacaaccacactttatctt 47191027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 29558330 - 29558249
Alignment:
Q  120 aatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaa 201  Q
    ||||||| |||||||||||||| ||||||| |  ||||||||||| |||||||| | | || ||||||||||||||||||||    
T  29558330 aatgttatatgaacaccctttattcatacatctcattgtacaccctatatattaggaatatattggtaaattcatctcacaa 29558249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 215
Target Start/End: Original strand, 51249323 - 51249407
Alignment:
Q  131 aacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||| |||  || || ||| |||||| |||  |||||||| |||||||||||||||||||||||||| ||||||||||    
T  51249323 aacaccctttattcacccaacccattatacacctcatgcattaaggatattttggtaaattcatctcacaaccacactttctctt 51249407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 215
Target Start/End: Original strand, 52629870 - 52629927
Alignment:
Q  158 tacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||| || ||||||||| ||||| |||| ||||||||||||||| ||||| ||||    
T  52629870 tacaccctatgtattaaggatatttttgtaagttcatctcacaaccacactttatctt 52629927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 3e-47; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 116 - 227
Target Start/End: Original strand, 33242403 - 33242514
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  33242403 ggaaaatgttacatgaacaccatttaatcatacaccttattgtacaccccatgtattaaggacattttggtaaattcatctcacaaacatactttctctt 33242502  T
Q  216 tcatctcctctc 227  Q
    ||||||||||||    
T  33242503 tcatctcctctc 33242514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 118 - 227
Target Start/End: Original strand, 27441544 - 27441653
Alignment:
Q  118 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctttc 217  Q
    |||||||||||||||||||||||||||||||||||||||||||| || || ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  27441544 aaaatgttacatgaacaccctttaatcatacaccctattgtacatcctatgtattaaggatattttggtaaattcatctcacaaccatactttctctttc 27441643  T
Q  218 atctcctctc 227  Q
    ||||||||||    
T  27441644 atctcctctc 27441653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 116 - 227
Target Start/End: Original strand, 33253913 - 33254025
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctc-t 214  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||  |||| |||||| |||||||||||||||||||| |||||||| || |    
T  33253913 ggaaaatgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctcacaatcatactttatctt 33254012  T
Q  215 ttcatctcctctc 227  Q
    |||||||||||||    
T  33254013 ttcatctcctctc 33254025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 3213400 - 3213499
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||| ||||||||||| ||||||| |  |||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||| ||||    
T  3213400 ggaaaatgttacataaacaccctttattcatacatctcattgtacaccccatgtattaaggatattttggtaaattcatttcacaaccatactttatctt 3213499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 116 - 215
Target Start/End: Complemental strand, 13743321 - 13743222
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||||||||||||| |||| ||||||| || |||||||||||||| ||||| ||| |||||||||| ||||||||||||||| ||||| ||||    
T  13743321 ggaaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatctt 13743222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 116 - 215
Target Start/End: Complemental strand, 13748821 - 13748722
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||||||||||||| |||| ||||||| || |||||||||||||| ||||| ||| |||||||||| ||||||||||||||| ||||| ||||    
T  13748821 ggaaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatctt 13748722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 118 - 210
Target Start/End: Complemental strand, 24204085 - 24203993
Alignment:
Q  118 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatacttt 210  Q
    ||||||||||||||||||| |||| || ||||||||||||||||| |||| ||||| ||| |||||||||| ||||||||||||||| |||||    
T  24204085 aaaatgttacatgaacaccatttattcctacaccctattgtacactccatgtattagggatattttggtaagttcatctcacaaccacacttt 24203993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 215
Target Start/End: Complemental strand, 7273435 - 7273336
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||||||||| || |||||| ||||||||||||||| |||||  || |||||||||| |||||||||||| || ||||| ||||    
T  7273435 ggaaaatgttacatgaacaccctttattcctacaccttattgtacaccccatgtattagagatattttggtaagttcatctcacaatcacactttatctt 7273336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 215
Target Start/End: Complemental strand, 9698433 - 9698334
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||||||||| || |||| || ||||||||||| || ||||| ||| |||||||||| ||||||||||||||| ||||| ||||    
T  9698433 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 9698334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 215
Target Start/End: Complemental strand, 26670109 - 26670010
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||||||||| || ||||||  |||||||||| ||| ||||| ||| |||||||||| ||||||||||||||| ||||| ||||    
T  26670109 ggaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcacaaccacactttatctt 26670010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 227
Target Start/End: Complemental strand, 31109322 - 31109211
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||||||||||||||||| || ||| ||||||||||  | || ||| |||||| |||||||| || || |||| | ||||||||    
T  31109322 ggaaaatgttacatgaacaccctttaatcatacatcccattatacaccccatgcactagggatattttgataaattcaacttacgaccacattttctctt 31109223  T
Q  216 tcatctcctctc 227  Q
    ||||||||||||    
T  31109222 tcatctcctctc 31109211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 116 - 215
Target Start/End: Complemental strand, 21293777 - 21293678
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||| ||||||||||| |||||||    | |||||||||||| ||||||||| |||||||||||||||| ||||||||| ||||| ||||    
T  21293777 ggaaaatgttacataaacaccctttattcatacatttcactgtacaccccatgtattaaggatattttggtaaattcatttcacaaccacactttatctt 21293678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 26466799 - 26466898
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||| ||||||||||| || ||||||| ||||||||| |||| ||||| ||  |||||||||| ||||||||||||||| ||||| ||||    
T  26466799 ggaaaatgttacataaacaccctttattcctacaccccattgtacactccatgtattagggttattttggtaagttcatctcacaaccacactttatctt 26466898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 30014343 - 30014442
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||||||||| || |||| || ||| |||| ||||| ||||| | | |||||||||| ||||||||||||||||||||| ||||    
T  30014343 ggaaaatgttacatgaacaccctttattcctacatcccattatacatcccatgtattaggcatattttggtaagttcatctcacaaccatactttatctt 30014442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 7292747 - 7292846
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||||| ||||||| |||| |||||||||  ||| ||||||| || ||||| ||| |||||||||| ||||||||||||||| ||||| ||||    
T  7292747 ggaaaatgttacaagaacaccatttattcatacacctcattatacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 7292846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 21279929 - 21280028
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||||||||| |  ||||  | |||| ||| ||||| ||||| ||| |||||||||||||||||||||||||| ||||| ||||    
T  21279929 ggaaaatgttacatgaacaccctttatttctacattccattgcacatcccatgtattagggatattttggtaaattcatctcacaaccacactttatctt 21280028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 116 - 210
Target Start/End: Original strand, 7367549 - 7367643
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatacttt 210  Q
    ||||||||||| ||||||| | |||| |||||||||  |||||||| ||||| ||||| ||| |||||||||| ||||||||||||||| |||||    
T  7367549 ggaaaatgttatatgaacatcatttattcatacacctcattgtacatcccatgtattagggatattttggtaagttcatctcacaaccacacttt 7367643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 118 - 215
Target Start/End: Original strand, 30735984 - 30736081
Alignment:
Q  118 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||||||||||  |||| || ||||||| |||||||||| ||| |||||  || |||||||||| |||||||||||| || ||||| ||||    
T  30735984 aaaatgttacatgaacactttttattcctacaccccattgtacacctcatgtattagtgatattttggtaagttcatctcacaatcacactttatctt 30736081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 116 - 227
Target Start/End: Complemental strand, 17619252 - 17619141
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||    
T  17619252 ggaaaatgttacatgaacaccttttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaattcatctcacaaccatactttctctt 17619153  T
Q  216 tcatctcctctc 227  Q
    ||||||||||||    
T  17619152 tcatctcctctc 17619141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 116 - 227
Target Start/End: Original strand, 32728357 - 32728468
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||| |||||||||||||    
T  32728357 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacattttagtaaattcatctcacaatcatactttctctt 32728456  T
Q  216 tcatctcctctc 227  Q
    ||||||||||||    
T  32728457 tcatctcctctc 32728468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 116 - 227
Target Start/End: Complemental strand, 55272476 - 55272365
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||    
T  55272476 ggaaaatgttacatgaacatcctttaatcatacactctattgtacaccccatgcattaaggatattttggtaaattcatctcacaaccatactttctctt 55272377  T
Q  216 tcatctcctctc 227  Q
    ||||||||||||    
T  55272376 tcatctcctctc 55272365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 116 - 226
Target Start/End: Original strand, 711960 - 712070
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||| ||||||||||||||||||||||| |||||||||||||    
T  711960 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccctatgcattaaggatattttggtaaattcatctcacaaacatactttctctt 712059  T
Q  216 tcatctcctct 226  Q
    |||||||||||    
T  712060 tcatctcctct 712070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 116 - 224
Target Start/End: Complemental strand, 960970 - 960862
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||| |||||||||||||||||||||| | || | |||||||||||    
T  960970 ggaaaatgttacatgaacaccctttaatcatacactctattgtacaccctatacattagggacattttggtaaattcatcttataatcgtactttctctt 960871  T
Q  216 tcatctcct 224  Q
    |||||||||    
T  960870 tcatctcct 960862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 116 - 227
Target Start/End: Complemental strand, 48435679 - 48435568
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||| ||||||||||||||| |||||||| |||||||||||||||||||||  |||| |||||| |||||||||||||||||||| |||||||| ||||    
T  48435679 ggaaagtgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctcacaatcatactttatctt 48435580  T
Q  216 tcatctcctctc 227  Q
    ||||||||||||    
T  48435579 tcatctcctctc 48435568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 118 - 227
Target Start/End: Original strand, 35037007 - 35037116
Alignment:
Q  118 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctttc 217  Q
    |||||||||||||| |||||||||| ||||||| ||||||||||||||||  |||||||| |||||||||||||||||||||||||||| ||| ||||||    
T  35037007 aaaatgttacatgagcaccctttaaccatacactctattgtacaccccatgcattaaggatattttggtaaattcatctcacaaccatattttttctttc 35037106  T
Q  218 atctcctctc 227  Q
     |||||||||    
T  35037107 ttctcctctc 35037116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 118 - 221
Target Start/End: Complemental strand, 3756344 - 3756242
Alignment:
Q  118 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctttc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||| ||||||| ||||||||| |||||||| ||||||    
T  3756344 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaaggatattttagtaaatttatctcacaatcatacttt-tctttc 3756246  T
Q  218 atct 221  Q
    ||||    
T  3756245 atct 3756242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 116 - 223
Target Start/End: Complemental strand, 46827806 - 46827699
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||  |||||| || |||||||||||| ||||||||| |||| ||||||||    
T  46827806 ggaaaatgttacatgaacaccctttaatcatacactctattgtacacccaatgcattaagaacgttttggtaaatttatctcacaaacatattttctctt 46827707  T
Q  216 tcatctcc 223  Q
    ||||||||    
T  46827706 tcatctcc 46827699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 118 - 227
Target Start/End: Original strand, 38851515 - 38851624
Alignment:
Q  118 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctttc 217  Q
    ||||||||||||||| | |||||||||||||| | || ||||||| ||||  |||| |||||||||| ||||||||||||||||||||||||||||||||    
T  38851515 aaaatgttacatgaatatcctttaatcatacatcataatgtacactccatgcattatggacattttgataaattcatctcacaaccatactttctctttc 38851614  T
Q  218 atctcctctc 227  Q
    ||||||||||    
T  38851615 atctcctctc 38851624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 149 - 224
Target Start/End: Original strand, 19879987 - 19880062
Alignment:
Q  149 accctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctttcatctcct 224  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  19879987 accctattgtacaccccatatattatggacattttggtaaattcatctcacaatcatactttctctttcatctcct 19880062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 116 - 203
Target Start/End: Complemental strand, 28982922 - 28982835
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaacc 203  Q
    |||||||||||||||||||||||||| |  |||||||||||||||| ||||||||||| ||| |||||||||| ||||||||||||||    
T  28982922 ggaaaatgttacatgaacaccctttatttctacaccctattgtacatcccatatattagggatattttggtaagttcatctcacaacc 28982835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 28988473 - 28988572
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||||||||| |||||||||  ||||||||||||||  | || |||||||||| ||||||||||||| ||||| ||||||||||    
T  28988473 ggaaaatgttacatgaacaccctttattcatacacctcattgtacaccccatgcactagggacattttgataaattcatctcataaccacactttctctt 28988572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 158 - 227
Target Start/End: Complemental strand, 36004174 - 36004105
Alignment:
Q  158 tacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctttcatctcctctc 227  Q
    |||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  36004174 tacaccccatatattagggacattttgataaatttatctcacaaccatactttctctttcatctcctctc 36004105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 23035980 - 23036079
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||||||||||  |||||| || ||||||||||||||||||| |||||||| ||| ||||| |||| ||||||||||||||| ||||| ||||    
T  23035980 ggaaaatgttacatgaacctcctttattcctacaccctattgtacaccctatatattagggatatttttgtaagttcatctcacaaccacactttatctt 23036079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 33703141 - 33703240
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||||||||| |  |||| | ||||||||||||||| ||||| ||| |||||||||| ||||||||||||||| ||||| ||||    
T  33703141 ggaaaatgttacatgaacaccctttatttctacatcttattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatctt 33703240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 116 - 210
Target Start/End: Original strand, 27864564 - 27864658
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatacttt 210  Q
    |||||||||||||| |||||| |||| ||||||| || |||||||||||||| ||||| ||| |||||||||| ||||||||||||||| |||||    
T  27864564 ggaaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacacttt 27864658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 118 - 215
Target Start/End: Complemental strand, 27893940 - 27893843
Alignment:
Q  118 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||| |||||| |||| ||||||| || |||||||||||||| ||||| ||| |||||||||| ||||||||||||||| ||||| ||||    
T  27893940 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaatttcatctcacaaccacactttatctt 27893843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 116 - 204
Target Start/End: Complemental strand, 1771366 - 1771278
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaacca 204  Q
    |||||||||||||||||||||||||| || ||||||| |||||||||||||| |||||  || |||||| ||| |||||||||||||||    
T  1771366 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccccatgtattagagatattttgataagttcatctcacaacca 1771278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 116 - 204
Target Start/End: Complemental strand, 55966446 - 55966358
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaacca 204  Q
    |||||||||||||| ||||||||||| ||||||| || |||||||| ||||| ||||| ||| |||||||||| |||||||||||||||    
T  55966446 ggaaaatgttacataaacaccctttattcatacatcccattgtacatcccatgtattagggatattttggtaagttcatctcacaacca 55966358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 196
Target Start/End: Complemental strand, 49229764 - 49229684
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatct 196  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||  |||  |||||||| ||| ||||||||||||||    
T  49229764 ggaaaatgttatatgaacatcctttaatcatacaccctattgtacacttcatgcattaaggatattctggtaaattcatct 49229684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 25051693 - 25051792
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||| |||||||||| ||||| || ||||||| ||||||||||| || ||||| ||| |||||||||| |||||||||||| || ||||| ||||    
T  25051693 ggaaaatgtcacatgaacacactttattcctacaccccattgtacaccctatgtattagggatattttggtaagttcatctcacaatcacactttatctt 25051792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 215
Target Start/End: Complemental strand, 27316813 - 27316714
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||| | |||||||||||| || ||||||  ||| |||||||||| ||||||||| |||||||||| ||||||||| ||||| ||||| ||||    
T  27316813 ggaaaatgttaaacgaacaccctttattcctacacctcattatacaccccatgtattaaggatattttggtaagttcatctcataaccacactttatctt 27316714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 27550309 - 27550408
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||||||||| |  ||||| | |||||||||| ||| ||||| ||| |||||||||| ||||||| ||||||| ||||| ||||    
T  27550309 ggaaaatgttacatgaacaccctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatcttacaaccacactttatctt 27550408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 117 - 215
Target Start/End: Original strand, 41878407 - 41878505
Alignment:
Q  117 gaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||||||||||| ||||| |||||||||  ||||||||||| ||  |||| ||| |||||| ||| ||||||||||||||| || |||||||    
T  41878407 gaaaatgttacatgaacactctttattcatacacctcattgtacaccctatccattagggatattttgataagttcatctcacaaccaaaccttctctt 41878505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 116 - 210
Target Start/End: Complemental strand, 48463550 - 48463456
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatacttt 210  Q
    |||||||||||||| |||||| |||| |||||||    |||||||| ||||| ||||| ||| |||||||||| |||||||||||||||||||||    
T  48463550 ggaaaatgttacataaacaccatttattcatacatttcattgtacatcccatgtattagggatattttggtaagttcatctcacaaccatacttt 48463456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 118 - 215
Target Start/End: Original strand, 31680904 - 31681001
Alignment:
Q  118 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||| | |||||| |||| |||||||  | |||||||||||| ||||||| ||| |||||||||| ||||||||||||||| ||||| ||||    
T  31680904 aaaatgttacgtaaacaccatttattcatacattccattgtacaccccgtatattagggatattttggtaagttcatctcacaaccacactttatctt 31681001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 118 - 215
Target Start/End: Complemental strand, 41327641 - 41327544
Alignment:
Q  118 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||||  |||||||||| ||| |||||| ||||||||||  ||  | || |||||||||||||||||||||||||| ||| ||||||||||    
T  41327641 aaaatgttacatagacaccctttattcacacaccccattgtacaccttatgcactacggacattttggtaaattcatctcacatccacactttctctt 41327544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 35017733 - 35017831
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||||||||| || || | |  |||||||||||||| || || ||| |||||||||| ||||||||||||||| ||||| ||||    
T  35017733 ggaaaatgttacatgaacaccctttattcctatatctcattgtacaccccatgta-tagggatattttggtaagttcatctcacaaccacactttatctt 35017831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 41847971 - 41848070
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||||| ||||| |||||  ||| |||||  ||||||||||||||  ||||  |||||||||| ||||||||| |||||||| ||||||||||    
T  41847971 ggaaaatgttacaagaacatccttttttcacacacctcattgtacaccccatgcattagagacattttggcaaattcatcgcacaaccacactttctctt 41848070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 215
Target Start/End: Complemental strand, 45490413 - 45490314
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||||||||||||  |||| | ||||| || |||||||||| ||| ||||| ||| | ||| |||||||||||||||||||| ||||| ||||    
T  45490413 ggaaaatgttacatgaacacattttatttatacatccaattgtacacctcatgtattagggatactttagtaaattcatctcacaaccacactttatctt 45490314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 43514784 - 43514698
Alignment:
Q  118 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaacca 204  Q
    |||||||||||||||||||||||| || ||||| | |||||||||  ||| ||||| ||  |||||||||| |||||||||||||||    
T  43514784 aaaatgttacatgaacaccctttattcctacactccattgtacacttcatgtattagggttattttggtaagttcatctcacaacca 43514698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 215
Target Start/End: Complemental strand, 43949900 - 43949802
Alignment:
Q  118 aaaatgttacatgaacaccctttaat-catacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||| |||||||||||||||| || | | ||||  |||||||||||||| ||||| ||| |||||||||| ||||||||||||||| ||||| ||||    
T  43949900 aaaatgatacatgaacacccttttattcctgcacctcattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatctt 43949802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 12496956 - 12497055
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||| |||||||||||||| || ||||| | |||||||| ||||| |||||  || |||||||||| ||||||| |||| || ||||| ||||    
T  12496956 ggaaaatgttatatgaacaccctttattcctacactccattgtacatcccatgtattagagatattttggtaagttcatcttacaatcacactttatctt 12497055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 215
Target Start/End: Original strand, 39631102 - 39631200
Alignment:
Q  118 aaaatgttacatgaacaccctttaat-catacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||| ||||||||| |||||| || | ||||||  |||||||||| ||| ||||| ||| |||||||||| ||||||||||||||| ||||| ||||    
T  39631102 aaaatgatacatgaacccccttttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcacaaccacactttatctt 39631200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 215
Target Start/End: Complemental strand, 23204875 - 23204779
Alignment:
Q  119 aaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||||||||| ||||| || |||| || |||||||| || || ||||| ||| ||||| |||| ||||| ||||||||| ||||| ||||    
T  23204875 aaatgttacatgaacactctttattcctacatcccattgtacatcctatgtattagggatatttttgtaagttcatgtcacaaccacactttatctt 23204779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 36004204 - 36004168
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccc 152  Q
    ||||||||||||||||| |||||||||||||||||||    
T  36004204 ggaaaatgttacatgaataccctttaatcatacaccc 36004168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 3e-47; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 116 - 227
Target Start/End: Original strand, 43114557 - 43114668
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||| ||||||||||||||||||||||||||    
T  43114557 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctctt 43114656  T
Q  216 tcatctcctctc 227  Q
    ||||||||||||    
T  43114657 tcatctcctctc 43114668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 118 - 227
Target Start/End: Complemental strand, 11825752 - 11825643
Alignment:
Q  118 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctttc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||| |||||||||||| |||||||||||||||    
T  11825752 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaatcatactttctctttc 11825653  T
Q  218 atctcctctc 227  Q
    ||||||||||    
T  11825652 atctcctctc 11825643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 118 - 227
Target Start/End: Complemental strand, 41282072 - 41281963
Alignment:
Q  118 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctttc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||| ||| ||||||||||||||||||||||||||||    
T  41282072 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttgataatttcatctcacaaccatactttctctttc 41281973  T
Q  218 atctcctctc 227  Q
    ||||||||||    
T  41281972 atctcctctc 41281963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 116 - 224
Target Start/End: Original strand, 18491705 - 18491813
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||| ||||||||||||||||||||||||||||||||| |||||    
T  18491705 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacacctcatgcattaagaacattttggtaaattcatctcacaaccatacttactctt 18491804  T
Q  216 tcatctcct 224  Q
    |||||||||    
T  18491805 tcatctcct 18491813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 116 - 223
Target Start/End: Complemental strand, 966934 - 966827
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| || |||||||||||||||||||||| |||||||||||||    
T  966934 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaagaacgttttggtaaattcatctcacaaacatactttctctt 966835  T
Q  216 tcatctcc 223  Q
    ||||||||    
T  966834 tcatctcc 966827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 116 - 227
Target Start/End: Complemental strand, 12415560 - 12415449
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||  |||| |||||||||||||| || |||||||||||||||||||||||    
T  12415560 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcattagggacattttggtaattttatctcacaaccatactttctctt 12415461  T
Q  216 tcatctcctctc 227  Q
    ||||||||||||    
T  12415460 tcatctcctctc 12415449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 116 - 227
Target Start/End: Complemental strand, 12427620 - 12427509
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||  |||| |||||||||||||| || |||||||||||||||||||||||    
T  12427620 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcattagggacattttggtaattttatctcacaaccatactttctctt 12427521  T
Q  216 tcatctcctctc 227  Q
    ||||||||||||    
T  12427520 tcatctcctctc 12427509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 116 - 222
Target Start/End: Original strand, 16803968 - 16804074
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||  |||| |||||||||| ||| ||||||||||||||||||||||||||    
T  16803968 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacatcccatgcattagggacattttgataatttcatctcacaaccatactttctctt 16804067  T
Q  216 tcatctc 222  Q
    |||||||    
T  16804068 tcatctc 16804074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 116 - 222
Target Start/End: Original strand, 16843250 - 16843356
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||  |||| |||||||||| ||| ||||||||||||||||||||||||||    
T  16843250 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacatcccatgcattagggacattttgataatttcatctcacaaccatactttctctt 16843349  T
Q  216 tcatctc 222  Q
    |||||||    
T  16843350 tcatctc 16843356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 118 - 227
Target Start/End: Complemental strand, 4299518 - 4299409
Alignment:
Q  118 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctttc 217  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||  ||||| |||||||||||||||||||||||||| ||||||| ||||||     
T  4299518 aaaatgttatatgaacaccctttaatcatacaccctattgtacactccatgcattaatgacattttggtaaattcatctcacaatcatacttactcttta 4299419  T
Q  218 atctcctctc 227  Q
    ||||||||||    
T  4299418 atctcctctc 4299409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 116 - 227
Target Start/End: Original strand, 14285676 - 14285787
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||| |||||  |||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||| |  |||||||||||||    
T  14285676 ggaaaatattacacaaacaccctttaatcatacaccctattgtacaccctatatattaaagatattttggtaaattcatctcagagtcatactttctctt 14285775  T
Q  216 tcatctcctctc 227  Q
    ||||||||||||    
T  14285776 tcatctcctctc 14285787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 116 - 227
Target Start/End: Complemental strand, 34895841 - 34895730
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||| ||||||||||||||| |||||||| |||||||||||||||||||||  |||| |||||| |||||||||||||||||||| |||||||| ||||    
T  34895841 ggaaagtgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctcacaatcatactttatctt 34895742  T
Q  216 tcatctcctctc 227  Q
    ||||||||||||    
T  34895741 tcatctcctctc 34895730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 117 - 215
Target Start/End: Complemental strand, 34817875 - 34817777
Alignment:
Q  117 gaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||||||||||||||||| ||| |||||  ||||||||||||||  | || | |||||||||||||||||||||||||||| ||||||||||    
T  34817875 gaaaatgttacatgaacaccctttattcacacacctcattgtacaccccatgcactacgcacattttggtaaattcatctcacaaccacactttctctt 34817777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 134 - 227
Target Start/End: Complemental strand, 12531744 - 12531652
Alignment:
Q  134 accctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctttcatctcctctc 227  Q
    ||||||||||||||||||| |||||||||| ||   |||| || | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12531744 accctttaatcatacacccaattgtacacctcaagcattatgggc-ttttggtaaattcatctcacaaccatactttctctttcatctcctctc 12531652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 1750414 - 1750513
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||||||||| || ||||||| ||||||||||| || ||||| ||| ||||| |||| ||||||||||||||| ||||| ||||    
T  1750414 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccctatgtattagggatatttttgtaagttcatctcacaaccacactttatctt 1750513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 140 - 227
Target Start/End: Complemental strand, 4452026 - 4451939
Alignment:
Q  140 taatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctttcatctcctctc 227  Q
    |||||||||| | |||||||||||  ||  |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4452026 taatcatacatcttattgtacaccatatgcattagggatattttggtaaattcatctcacaaccatactttctctttcatctcctctc 4451939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 215
Target Start/End: Complemental strand, 4764826 - 4764727
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||| |||||| |||| || |||||||||||||||||||||| |||||   | |||||||||||||||||||||||||| ||||| ||||    
T  4764826 ggaaaatgttacatcaacaccatttattcctacaccctattgtacaccccatgtattataaatattttggtaaattcatctcacaaccacactttatctt 4764727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 118 - 201
Target Start/End: Complemental strand, 6518566 - 6518484
Alignment:
Q  118 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaa 201  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||||  |||| |||||||||||||| ||||||||||||    
T  6518566 aaaatgttacatgaacacc-tttaatcatacactctattgtacaccccatgcattagggacattttggtaatttcatctcacaa 6518484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 30838632 - 30838731
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||||||||| |  |||| | ||||||||||||||| ||||| ||| |||||||||| ||||||||||||||| ||||| ||||    
T  30838632 ggaaaatgttacatgaacaccctttatttctacatcttattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatctt 30838731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 116 - 215
Target Start/End: Complemental strand, 12302353 - 12302254
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||||||||| |  ||||||| ||||||||||| || ||||| ||| ||||| |||| ||||||||||||||| ||||| ||||    
T  12302353 ggaaaatgttacatgaacaccctttatttctacaccccattgtacaccctatgtattagggatatttttgtaagttcatctcacaaccacactttatctt 12302254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 116 - 215
Target Start/End: Complemental strand, 13780835 - 13780736
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||| |||||  |||| ||| |||||  ||||||||||||||| |||| ||| |||||| ||||||||||||||||||| ||||||||||    
T  13780835 ggaaaatgttacatcaacacattttattcacacacctcattgtacaccccatacattagggatattttgataaattcatctcacaaccacactttctctt 13780736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 16096747 - 16096846
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||||||||| || ||||||| ||| |||||||||| ||||| ||| |||||||| | || |||||||||||| ||||| ||||    
T  16096747 ggaaaatgttacatgaacaccctttattcctacaccccattatacaccccatgtattagggatattttggtgagttaatctcacaaccacactttatctt 16096846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 117 - 215
Target Start/End: Original strand, 19047158 - 19047256
Alignment:
Q  117 gaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||||||||||||||||| || ||||  | ||||||||||| || ||||| ||| |||||||||| ||||||||||||||| ||||| ||||    
T  19047158 gaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 19047256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 118 - 215
Target Start/End: Complemental strand, 43490499 - 43490402
Alignment:
Q  118 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||||||| || |||| || ||||||||| | || ||||| ||| |||||||||| ||||||||| ||||| ||||| ||||    
T  43490499 aaaatgttacatgaacaccctttattcctacatcccattgtacactctatgtattagggatattttggtaagttcatctcataaccacactttatctt 43490402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 204
Target Start/End: Original strand, 7070418 - 7070504
Alignment:
Q  118 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaacca 204  Q
    |||||||||||||||||||||||| ||||||| || ||||||  | |||| ||||  |||||||||| ||||||||||| |||||||    
T  7070418 aaaatgttacatgaacaccctttattcatacatcccattgtaacctccatttattggggacattttgataaattcatcttacaacca 7070504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 212
Target Start/End: Complemental strand, 8896681 - 8896587
Alignment:
Q  118 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttct 212  Q
    |||||||||||||||||||||||| ||| |||  | ||||||||||| ||| | || | | ||||||||||||||||||||||| || |||||||    
T  8896681 aaaatgttacatgaacaccctttattcacacattccattgtacaccctatacaataggaatattttggtaaattcatctcacaatcacactttct 8896587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 215
Target Start/End: Complemental strand, 43335863 - 43335764
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||| ||||||| | |||| || ||||||  |||||||| ||||| ||||| ||| |||||||||| ||||||||||||| | ||||| ||||    
T  43335863 ggaaaatgttatatgaacatcatttattcctacacctcattgtacatcccatgtattagggatattttggtaagttcatctcacaactacactttatctt 43335764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 118 - 195
Target Start/End: Original strand, 33229303 - 33229381
Alignment:
Q  118 aaaatgttacatgaacaccctttaat-catacaccctattgtacaccccatatattaaggacattttggtaaattcatc 195  Q
    |||||| |||||||||||||||| || | ||||||  |||||||||||||| ||||| ||| |||||||||| ||||||    
T  33229303 aaaatgatacatgaacacccttttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatc 33229381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 212
Target Start/End: Original strand, 42026767 - 42026865
Alignment:
Q  116 ggaaaatgttacatgaacaccc--tttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttct 212  Q
    ||||||||||||||||||||||  |||| |||||||  | |||||||| |||    |||| ||| ||||||| |||||||||||||||| | |||||||    
T  42026767 ggaaaatgttacatgaacacccaatttattcatacattccattgtacatcccgcgcattagggatattttggcaaattcatctcacaactacactttct 42026865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 42849916 - 42849864
Alignment:
Q  158 tacaccccatatattaaggacattttggtaaattcatctcacaaccatacttt 210  Q
    |||||||||| ||||| ||| |||||| ||| ||||||||||||||| |||||    
T  42849916 tacaccccatgtattagggatattttgataagttcatctcacaaccacacttt 42849864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 42849946 - 42849910
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccc 152  Q
    |||||||||||||||||||||||||| || |||||||    
T  42849946 ggaaaatgttacatgaacaccctttattcctacaccc 42849910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 118 - 227
Target Start/End: Complemental strand, 45817 - 45708
Alignment:
Q  118 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctttc 217  Q
    |||||||||||||||||||||||||||||||||||||||||||| || || ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  45817 aaaatgttacatgaacaccctttaatcatacaccctattgtacatcctatgtattaaggatattttggtaaattcatctcacaaccatactttctctttc 45718  T
Q  218 atctcctctc 227  Q
    ||||||||||    
T  45717 atctcctctc 45708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 8e-45; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 116 - 227
Target Start/End: Original strand, 31513287 - 31513398
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||  |||||||| |||||||||||||||||||||||||||||||||||||    
T  31513287 ggaaaatgttacatgaacactctttaatcatacaccctattgtataccccatgcattaaggatattttggtaaattcatctcacaaccatactttctctt 31513386  T
Q  216 tcatctcctctc 227  Q
    ||||||||||||    
T  31513387 tcatctcctctc 31513398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 116 - 227
Target Start/End: Original strand, 40236919 - 40237030
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||  |||| |||||||||||||| ||||||||||||||||| ||||||||    
T  40236919 ggaaaatgttacatgaacaccctttaatcatacatcctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatattttctctt 40237018  T
Q  216 tcatctcctctc 227  Q
    ||||||||||||    
T  40237019 tcatctcctctc 40237030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 117 - 227
Target Start/End: Complemental strand, 31408732 - 31408622
Alignment:
Q  117 gaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctcttt 216  Q
    |||||||||||||||||||||||||||||||||| |||||||||| |||||  |||||||| |||||||||||||||| |||||||||||||||||||||    
T  31408732 gaaaatgttacatgaacaccctttaatcatacactctattgtacatcccatgcattaaggatattttggtaaattcatttcacaaccatactttctcttt 31408633  T
Q  217 catctcctctc 227  Q
    |||||||||||    
T  31408632 catctcctctc 31408622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 116 - 227
Target Start/End: Complemental strand, 27535331 - 27535220
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |||| | |||| ||||||||||||| ||||||||||||| ||||||||||||    
T  27535331 ggaaaatgttacatgaacaccctttaatcatacactctattgtacactccatgtgttaaagacattttggtaatttcatctcacaactatactttctctt 27535232  T
Q  216 tcatctcctctc 227  Q
    ||||||||||||    
T  27535231 tcatctcctctc 27535220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 116 - 227
Target Start/End: Original strand, 33384870 - 33384982
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccc-tattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctct 214  Q
    ||||||||||||||||||| | ||||||||||||||| ||||||| || ||||  |||| ||||||||||||||||||||||||||| ||||||||||||    
T  33384870 ggaaaatgttacatgaacatcatttaatcatacacccctattgtatactccatgcattagggacattttggtaaattcatctcacaaacatactttctct 33384969  T
Q  215 ttcatctcctctc 227  Q
    |||||||||||||    
T  33384970 ttcatctcctctc 33384982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 118 - 215
Target Start/End: Complemental strand, 4638297 - 4638200
Alignment:
Q  118 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||||||||||| |||| |||||||| | |||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||| ||||    
T  4638297 aaaatgttacatgaacaccttttattcatacactcaattgtacaccccatatattatggatattttggtaagttcatctcacaaccatactttatctt 4638200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 118 - 215
Target Start/End: Original strand, 10573751 - 10573848
Alignment:
Q  118 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||| ||||||||||| ||||||| ||||||||||||||||| ||||| | | |||||||||||||||||||||||||| ||||| ||||    
T  10573751 aaaatgttacataaacaccctttattcatacatcctattgtacaccccatgtattaggaatattttggtaaattcatctcacaaccacactttatctt 10573848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 118 - 210
Target Start/End: Original strand, 44326180 - 44326272
Alignment:
Q  118 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatacttt 210  Q
    |||||||||||| ||||||||||| ||||||| || |||||||||| ||||||||| ||| |||||||||| ||||||||||||||| |||||    
T  44326180 aaaatgttacataaacaccctttattcatacatcccattgtacacctcatatattagggatattttggtaagttcatctcacaaccacacttt 44326272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 215
Target Start/End: Complemental strand, 5811024 - 5810925
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||| ||||||||| || ||||||| ||||||||||| |||||||| ||| |||||| ||| ||||||||||||||| ||||| ||||    
T  5811024 ggaaaatgttacatgaccaccctttattcctacaccccattgtacaccctatatattagggatattttgataagttcatctcacaaccacactttatctt 5810925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 215
Target Start/End: Complemental strand, 24001112 - 24001013
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||||||||| || |||| || ||||||||||| || ||||| ||| |||||||||| ||||||||||||||| ||||| ||||    
T  24001112 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 24001013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 215
Target Start/End: Complemental strand, 42538531 - 42538432
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||||||||| || |||| || ||||||||||| || ||||| ||| |||||||||| ||||||||||||||| ||||| ||||    
T  42538531 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 42538432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 116 - 215
Target Start/End: Complemental strand, 5194331 - 5194232
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||||||||||||| |||| |||||||||  ||||||||||| || | ||||||| |||||| |||||||||||||||| || |||| |||||    
T  5194331 ggaaaatgttacatgaacaccatttattcatacacctcattgtacaccctatgttttaaggatattttgataaattcatctcacaatcacacttactctt 5194232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 35069721 - 35069820
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||| ||||| || ||||||  |||||||||| ||| ||||| ||| |||||||||| ||||||||||||||| ||||| ||||    
T  35069721 ggaaaatgttacatgaacactctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcacaaccacactttatctt 35069820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 118 - 215
Target Start/End: Complemental strand, 43343722 - 43343625
Alignment:
Q  118 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||||||||| | |||| |  |||||||||||||||||||||| ||||| ||| |||||| ||| ||||||||||||||| ||||| ||||    
T  43343722 aaaatgttacatgaacatcatttatttctacaccctattgtacaccccatgtattagggatattttgataagttcatctcacaaccacactttatctt 43343625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 118 - 215
Target Start/End: Complemental strand, 44417032 - 44416935
Alignment:
Q  118 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||||||||| | |||| |  |||||||||||||||||||||| ||||| ||| |||||| ||| ||||||||||||||| ||||| ||||    
T  44417032 aaaatgttacatgaacatcatttatttctacaccctattgtacaccccatgtattagggatattttgataagttcatctcacaaccacactttatctt 44416935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 5015395 - 5015494
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||| ||||| |  ||||| | |||||||||| ||| ||||| ||| |||||||||| ||||||||||||||| ||||| ||||    
T  5015395 ggaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatctcacaaccacactttatctt 5015494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 215
Target Start/End: Complemental strand, 24280696 - 24280597
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||| ||||||||||||| |||||||||||||| |||| |||||  | ||   | ||||||||||||||||||||||| || ||||||||||    
T  24280696 ggaaaatgttacgtgaacaccctttattcatacaccctattctacatcccatgcactagaaatattttggtaaattcatctcacaatcacactttctctt 24280597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 119 - 210
Target Start/End: Complemental strand, 26898499 - 26898408
Alignment:
Q  119 aaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatacttt 210  Q
    |||||||||||||||||| |||| |||||||||| ||||||||  |||| ||||| ||| |||||||||| ||||||| ||||||| |||||    
T  26898499 aaatgttacatgaacaccttttattcatacacccaattgtacattccatgtattagggatattttggtaagttcatcttacaaccacacttt 26898408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 45326020 - 45326119
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||| |||||||| |||||| |||| ||||||| |  |||||||||||||||||||| ||| |||||||||| |||||||||||| || ||||| ||||    
T  45326020 ggaaagtgttacataaacaccttttattcatacatcacattgtacaccccatatattagggatattttggtaagttcatctcacaatcacactttatctt 45326119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 41861674 - 41861775
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatatta-ag-gacattttggtaaattcatctcacaaccatactttctc 213  Q
    |||||||||||||||||||||||||| |||||||||| ||| ||||||| || ||||| || || |||||||||| || |||||||||||| ||||| ||    
T  41861674 ggaaaatgttacatgaacaccctttattcatacacccaattatacaccctatgtattatagagatattttggtaagtttatctcacaaccacactttatc 41861773  T
Q  214 tt 215  Q
    ||    
T  41861774 tt 41861775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 116 - 204
Target Start/End: Original strand, 42972852 - 42972940
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaacca 204  Q
    |||||||||||| |||||| |||||| || ||||| | |||||||||| ||| ||||| ||| |||||||||| |||||||||||||||    
T  42972852 ggaaaatgttacctgaacatcctttattcctacactccattgtacacctcatgtattagggatattttggtaagttcatctcacaacca 42972940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 183
Target Start/End: Original strand, 39998408 - 39998475
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacatttt 183  Q
    ||||||||||||||||||||  |||||||||||| ||||||||||||||||| ||||| ||| |||||    
T  39998408 ggaaaatgttacatgaacacattttaatcatacatcctattgtacaccccatgtattagggatatttt 39998475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 125 - 215
Target Start/End: Complemental strand, 32029908 - 32029818
Alignment:
Q  125 tacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||| |||||  |||| || ||||||| |||||||||||||| ||||| ||| |||||||||||||||||| ||||||| ||||| ||||    
T  32029908 tacataaacactttttattcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctaacaaccacactttatctt 32029818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 118 - 215
Target Start/End: Complemental strand, 16180454 - 16180358
Alignment:
Q  118 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||| |||||| |||| || ||||||| |||||||||||||  |||||   | |||||||||||||||||||||||||| ||||| ||||    
T  16180454 aaaatgttacatcaacaccatttattcctacaccc-attgtacaccccacgtattataaatattttggtaaattcatctcacaaccacactttatctt 16180358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 204
Target Start/End: Original strand, 9216302 - 9216389
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaacca 204  Q
    |||||||||||||||||||||||||| || || | ||||||||||| |||||  ||||  || |||||||||| |||||||||||||||    
T  9216302 ggaaaatgttacatgaacaccctttattcctatatcctattgtaca-cccatgcattagagatattttggtaagttcatctcacaacca 9216389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 43317443 - 43317542
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||||||||||||| |||| |||||||||  |||||||| || ||   ||| ||| |||||| |||||||||||||||| || |||| |||||    
T  43317443 ggaaaatgttacatgaacaccatttattcatacacctcattgtacatcctatgctttagggatattttgataaattcatctcacaatcacacttactctt 43317542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 215
Target Start/End: Complemental strand, 27393344 - 27393261
Alignment:
Q  132 acaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||| || |||| |||||||||||| | || ||||| ||| ||||| |||| ||||||||||||||| ||||| ||||    
T  27393344 acaccctttattcctacatcctattgtacactctatgtattagggatatttttgtaagttcatctcacaaccacactttatctt 27393261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 38160641 - 38160580
Alignment:
Q  154 attgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||| ||||| ||| ||||| |||| ||||||||||||| | ||||| ||||    
T  38160641 attgtacaccccatgtattagggatattttagtaacttcatctcacaactacactttatctt 38160580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 8e-45; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 116 - 227
Target Start/End: Original strand, 17208074 - 17208185
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||| ||||||||||||||||||||||  |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  17208074 ggaaaatgttacgtgaacaccctttaatcatacactttattgtacaccccatgcattaaggacattttggtaaattcatctcacaaccatactttctctt 17208173  T
Q  216 tcatctcctctc 227  Q
    ||||||||||||    
T  17208174 tcatctcctctc 17208185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 116 - 227
Target Start/End: Complemental strand, 32473494 - 32473383
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||  |||| ||| |||||||||| ||||||||||||||||||||||||||    
T  32473494 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacaccacatgcattagggatattttggtaatttcatctcacaaccatactttctctt 32473395  T
Q  216 tcatctcctctc 227  Q
    ||||||||||||    
T  32473394 tcatctcctctc 32473383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 116 - 230
Target Start/End: Complemental strand, 30622818 - 30622705
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||||||||||| |||||||||||||||||||||||| | |||||  |||||||| ||||||||||||| |||||||||||||||||||||||    
T  30622818 ggaaaatgttacatgaacatcctttaatcatacaccctattgta-agcccatgcattaaggatattttggtaaatttatctcacaaccatactttctctt 30622720  T
Q  216 tcatctcctctctct 230  Q
    |||||||||||||||    
T  30622719 tcatctcctctctct 30622705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 7617133 - 7617232
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||||||||| |||||||| | ||| |||||||||| ||||| ||| |||||||||| ||||||||||||||| ||||| ||||    
T  7617133 ggaaaatgttacatgaacaccctttattcatacactccattatacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatctt 7617232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 215
Target Start/End: Complemental strand, 2614749 - 2614650
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||||||||| || |||| || ||||||||||| || ||||| ||| |||||||||| ||||||||||||||| ||||| ||||    
T  2614749 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 2614650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 22512305 - 22512404
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||||||||| || ||||| | ||||||||| |||| ||||| ||| |||||||||| ||||||||||||||| ||||| ||||    
T  22512305 ggaaaatgttacatgaacaccctttattcctacactccattgtacactccatgtattagggatattttggtaagttcatctcacaaccacactttatctt 22512404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 38470579 - 38470678
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||| ||||||||||| |||||||  | |||||||||||||| ||||||||| |||||||||||||||| |||||| || ||||| ||||    
T  38470579 ggaaaatgttacataaacaccctttattcatacattccattgtacaccccatgtattaaggatattttggtaaattcatttcacaatcacactttatctt 38470678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 215
Target Start/End: Complemental strand, 41334763 - 41334664
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||||||||| |||||||||  ||| ||||||| || ||||| ||| |||||||||| ||||||||||||||| ||||| ||||    
T  41334763 ggaaaatgttacatgaacaccctttattcatacacctcattatacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 41334664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 118 - 215
Target Start/End: Original strand, 5256997 - 5257094
Alignment:
Q  118 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||| |||||| |||| ||||||| || |||||||||||||| ||||| ||| |||||||||| ||||||||||||||| ||||| ||||    
T  5256997 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaatttcatctcacaaccacactttatctt 5257094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 18033982 - 18034081
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||||||||| || ||||| | ||||||||||| || ||||| ||| ||||| |||| ||||||||||||||| ||||| ||||    
T  18033982 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccctatgtattagggatatttttgtaagttcatctcacaaccacactttatctt 18034081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 188
Target Start/End: Complemental strand, 33855143 - 33855071
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaa 188  Q
    |||||||||||||||||||||||||| || ||||||| |||||||||||||| ||||| | ||||||||||||    
T  33855143 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccccatgtattaggaacattttggtaa 33855071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 33801469 - 33801568
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||||||||||| |||||| |  ||||||| ||||||||| |||| ||||| ||| ||||| |||| ||||||||||||||| ||||| ||||    
T  33801469 ggaaaatgttacatgaacatcctttatttctacaccccattgtacactccatgtattagggatattttagtaagttcatctcacaaccacactttatctt 33801568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 173
Target Start/End: Complemental strand, 25915085 - 25915030
Alignment:
Q  118 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatatta 173  Q
    |||||||||||||||||||||||| || ||||||  ||||||||||| || |||||    
T  25915085 aaaatgttacatgaacaccctttattcctacacctcattgtacacccaatgtatta 25915030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 116 - 227
Target Start/End: Complemental strand, 35556 - 35445
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||| |||||| |||||||||||||| |||||||||||||||  |||| |||||| ||||||||||||||||||||||||||||||||||    
T  35556 ggaaaatgttacataaacaccatttaatcatacaccatattgtacaccccatgcattagggacatattggtaaattcatctcacaaccatactttctctt 35457  T
Q  216 tcatctcctctc 227  Q
    ||||||||||||    
T  35456 tcatctcctctc 35445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 11251 - 11350
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||| |||||||||| ||||| |||||||||| |||||||||||||||||||| ||| |||||||||| ||||||||||||||| ||||| ||||    
T  11251 ggaaaatgtcacatgaacacactttattcatacaccccattgtacaccccatatattagggatattttggtaagttcatctcacaaccacactttatctt 11350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 685 - 784
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||||||||| || ||||||  |||||||||| ||| ||||| ||| |||||||||| ||||||||||||||| ||||| ||||    
T  685 ggaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcacaaccacactttatctt 784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 117 - 215
Target Start/End: Original strand, 112656 - 112754
Alignment:
Q  117 gaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||||||||||||||||| || ||||  | ||||||||||| || ||||| ||| |||||||||| ||||||||||||||| ||||| ||||    
T  112656 gaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 112754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 215
Target Start/End: Complemental strand, 14288 - 14189
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||||||||| |  ||||||| |||||||| || || ||||| ||| ||||| |||| ||||||||||||||| ||||| ||||    
T  14288 ggaaaatgttacatgaacaccctttatttctacaccccattgtacatcctatgtattagggatatttttgtaagttcatctcacaaccacactttatctt 14189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 215
Target Start/End: Complemental strand, 24616 - 24517
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    |||||||||||||||||||||||||| |  ||||||| |||||||| || || ||||| ||| ||||| |||| ||||||||||||||| ||||| ||||    
T  24616 ggaaaatgttacatgaacaccctttatttctacaccccattgtacatcctatgtattagggatatttttgtaagttcatctcacaaccacactttatctt 24517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 215
Target Start/End: Complemental strand, 23521 - 23422
Alignment:
Q  116 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 215  Q
    ||||||||||| |||||||||||||| || ||||| | |||||||| ||||| |||||  || |||||||||| ||||||| |||| || ||||| ||||    
T  23521 ggaaaatgttatatgaacaccctttattcctacactccattgtacatcccatgtattagagatattttggtaagttcatcttacaatcacactttatctt 23422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University