View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12362_low_16 (Length: 242)
Name: NF12362_low_16
Description: NF12362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12362_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 4 - 224
Target Start/End: Complemental strand, 5973710 - 5973490
Alignment:
| Q |
4 |
agttttcaaggggcgtgcatgatatgttaaggtgggaaaagaatttctcttcacatcatccttcttcaataatggaacttgtatgatccggttcttacct |
103 |
Q |
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| T |
5973710 |
agttttcaaggggcatgcatgatatgttaaggtgggaaaagaatttctcttcacatcatccttcttcaataatggaacttgtatgatccggttcttacct |
5973611 |
T |
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| Q |
104 |
ctaataaacctaatagaatacaataattgacattggacatggcttaaactaagaaattccattccctctacgtcaaatttagtaaatcaaccacaccctt |
203 |
Q |
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| T |
5973610 |
ctaataaacctaatagaatacaataattgacattggacatggcttaaactaagaaattccattccctctacgtcaaatttagtaaatcaaccacaccctt |
5973511 |
T |
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| Q |
204 |
tgtcattaagagttacatatt |
224 |
Q |
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||||||||||||||||||||| |
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| T |
5973510 |
tgtcattaagagttacatatt |
5973490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 32 - 191
Target Start/End: Complemental strand, 5939784 - 5939625
Alignment:
| Q |
32 |
aaggtgggaaaagaatttctcttcacatcatccttcttcaataatggaacttgtatgatccggttcttacctctaataaacctaatagaatacaataatt |
131 |
Q |
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|||| |||||||||||||| ||| | ||||||||||| |||| |||||||||||| ||| |||||||||||| ||||||| ||||||| ||||||||| |
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| T |
5939784 |
aaggcgggaaaagaatttcacttttcgtcatccttctttaatagtggaacttgtataatctagttcttacctcttataaaccaaatagaacacaataatt |
5939685 |
T |
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| Q |
132 |
gacattggacatggcttaaactaagaaattccattccctctacgtcaaatttagtaaatc |
191 |
Q |
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| T |
5939684 |
gacattggatatagcataaactaagaaattccattctctctacgtcaaatttaataaatc |
5939625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 74 - 213
Target Start/End: Complemental strand, 5911114 - 5910975
Alignment:
| Q |
74 |
aatggaacttgtatgatccggttcttacctctaataaacctaatagaatacaataattgacattggacatggcttaaactaagaaattccattccctcta |
173 |
Q |
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|||||||||||||||| || |||||||||||||||||| ||| || ||| || || | |||||||||||||||||||| |||||||||||||| ||| | |
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| T |
5911114 |
aatggaacttgtatgaaccagttcttacctctaataaaactactaatatataagaactaacattggacatggcttaaacaaagaaattccattctctcca |
5911015 |
T |
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| Q |
174 |
cgtcaaatttagtaaatcaaccacaccctttgtcattaag |
213 |
Q |
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| T |
5911014 |
cttcaaacttagtaaatcaatcacaccctatatcattaag |
5910975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 5979571 - 5979609
Alignment:
| Q |
178 |
aaatttagtaaatcaaccacaccctttgtcattaagagt |
216 |
Q |
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| T |
5979571 |
aaatttagtaaatcaaccacaccctttatcattaagagt |
5979609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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