View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12362_low_18 (Length: 215)
Name: NF12362_low_18
Description: NF12362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12362_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 20 - 203
Target Start/End: Original strand, 4152520 - 4152695
Alignment:
| Q |
20 |
agagggaagatataccttccttgcacaacctatgaatcaccatatatagtaccatatcccaaataaactcattcttttttcttcttccattttctatatc |
119 |
Q |
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| T |
4152520 |
agagggaagatataccttccttgcacaacctacgaat--------atagtaccatatcccaaataaactcattcttttttcttcttccattttctatatc |
4152611 |
T |
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| Q |
120 |
acaaaaatgaaaatgccttcttttctaggttctttacctccacgatcattcttcttttgtttcctccttcttccacctttgctt |
203 |
Q |
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| T |
4152612 |
acaaaaatgaaaatgccttcttttctaggttctttacctccacgatcattcttcttttgtttcctccttcttccacttttgctt |
4152695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 87 - 194
Target Start/End: Original strand, 4159788 - 4159892
Alignment:
| Q |
87 |
ctcattcttttttcttcttccattttctatatcacaaaaatgaaaatgccttcttttctaggttctttacctccacgatcattcttcttttgtttcctcc |
186 |
Q |
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||||||||||||| |||||||||| | ||| |||||||||||||||||||||| || |||||||| | | |||||| |||||||||||||||||| ||| |
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| T |
4159788 |
ctcattctttttt--tcttccatttcc-atagcacaaaaatgaaaatgccttctcttttaggttctattcatccacgctcattcttcttttgtttcatcc |
4159884 |
T |
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| Q |
187 |
ttcttcca |
194 |
Q |
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|||||||| |
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| T |
4159885 |
ttcttcca |
4159892 |
T |
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