View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12362_low_3 (Length: 488)
Name: NF12362_low_3
Description: NF12362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12362_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-147; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 36993187 - 36993459
Alignment:
| Q |
1 |
gatcatcttactgatattattagggctgaagatgacaataatacggagactaattttcaaatggtaagttgcttttatttgagtttaagctatgaagcat |
100 |
Q |
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| T |
36993187 |
gatcatcttactgatattattagggctgaagatgacaataatacggagactaattttcaaatggtaagttgcttttatttgagtttaagctatgaagcat |
36993286 |
T |
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| Q |
101 |
tgacacatacaccacacacaggactgtgacacgtcgacattagtaatcagtaataatttataaaatgacctcattgaatgtaattatatgtgtcagtgat |
200 |
Q |
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| T |
36993287 |
tgacacatacaccacacacaggactgtgacacgtcgacattagtaatcagtaataatttataaaatgacctcattgaatgtaattatatgtgtcagtgat |
36993386 |
T |
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| Q |
201 |
gtgtggttgtcgaacactgtcggacaccatacatgccttcaatcagatacgtcggtgctacagagtcgttaag |
273 |
Q |
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| T |
36993387 |
gtgtggttgtcgaacactgtcggacaccatacatgccttcaatcagatacgtcggtgctacatagtggttaag |
36993459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 317 - 474
Target Start/End: Original strand, 36993510 - 36993667
Alignment:
| Q |
317 |
gttcatggtgtttctttatgtagactcacttgcatttatgaatctccaatgattttatatccacttaaaatctggaatactacattcacaactagatttc |
416 |
Q |
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| T |
36993510 |
gttcatggtgtttctttatgtagactcacttgcatttatgaatctccaatgattttatatccacttaaaatctggaatactacattcacaactagatttc |
36993609 |
T |
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| Q |
417 |
tatgtctcagtagcactaagattgttgatcgaaggcgtgtgtacgacacgtgtctgtg |
474 |
Q |
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| T |
36993610 |
tatgtctcagtagcactaaaattgttgatcgaagacgtgtgtacgacacgtgtctgtg |
36993667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 17693628 - 17693570
Alignment:
| Q |
1 |
gatcatcttactgatattattagggctgaagatgacaataatacggagactaattttca |
59 |
Q |
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|||||||||||||||||||||| ||||||||| || ||| |||| |||||||||||||| |
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| T |
17693628 |
gatcatcttactgatattattaaggctgaagaagagaatgatactgagactaattttca |
17693570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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