View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12362_low_6 (Length: 412)
Name: NF12362_low_6
Description: NF12362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12362_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 19 - 321
Target Start/End: Complemental strand, 40207634 - 40207332
Alignment:
| Q |
19 |
ccacgtttattgacacatgctgccgccactattatcctttgtagaaagatccaaggaaaatacaaagaagcttgtaacaattgtgagatcttaattagtt |
118 |
Q |
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| T |
40207634 |
ccacgtttattgacacatgctgccgccactattatcctttatagtaagatccaaggaaaatacaaagaagcttgtaacaattgtgagatcttaattagtt |
40207535 |
T |
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| Q |
119 |
acaatatgttggcataaatgagctagtgatattccaattgttatcacacgtgttattgctactattatcctttctttgttaacaatagaaagatccatag |
218 |
Q |
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| T |
40207534 |
acaatatgttggcataaatgagcttgtgatattccaattgttatcacacgtgttattgctactattatcctttctttgttaacaatagaaagatccatag |
40207435 |
T |
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| Q |
219 |
aaaatacacaggcaagagagagtaatagtactactttcataggttacttctttacagttgtatgttactttgttgttgtgctttctctcatgttcaaact |
318 |
Q |
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| T |
40207434 |
aaaatacaaaggcaagagagagtaatagtactactttcataggttacttcatcacagttgtatctgattttgttgttgtgctttctctcatgttcaaact |
40207335 |
T |
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| Q |
319 |
act |
321 |
Q |
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||| |
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| T |
40207334 |
act |
40207332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 243 - 397
Target Start/End: Complemental strand, 40206586 - 40206432
Alignment:
| Q |
243 |
atagtactactttcataggttacttctttacagttgtatgttactttgttgttgtgctttctctcatgttcaaactactgcttccttttttcttttggca |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40206586 |
atagtactactttcataggttacttctttacagttgtatgttactttgttgttgtgctttctctcatgttcaaactactgcttccttttttcttttggca |
40206487 |
T |
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| Q |
343 |
tcatagaattagataaaaataaaacaagctttcctttgttttcaagaatctacac |
397 |
Q |
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| T |
40206486 |
tcatagaattagataaaaataaaacaagctttcctttgttttcaagaatctacac |
40206432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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