View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12362_low_9 (Length: 294)
Name: NF12362_low_9
Description: NF12362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12362_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 22 - 281
Target Start/End: Original strand, 45604232 - 45604497
Alignment:
| Q |
22 |
acccatttcccacaatttgatttgcaaatttaatctgtgaattgaacatctcagtggctgaaatgttagtcacactattatgaaactctccattgaaggg |
121 |
Q |
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| T |
45604232 |
acccatttcccacaatttgatttgcaaatttaatctgtgaattgaacatctcagtggctgaaatgttagtcacactattatgaaactctccattgaaggg |
45604331 |
T |
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| Q |
122 |
tccttcttgcattgtaacttcttgaaaagctgaattttgatcaaatccatttctcatgaccaaagattcaactgaatttgaagagttcc------tatta |
215 |
Q |
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| T |
45604332 |
tccttcttgcattgtaacttcttgaaaagctgaattttgatcaaatccatttctcatgaccaaagattcaactgaatttgaagagttcctattattatta |
45604431 |
T |
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| Q |
216 |
ttaacatgatccaatgaaagccattcagcaaacaatagttttggtaaggtgctttgatgagtctct |
281 |
Q |
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| T |
45604432 |
ttaacatgatccaatgaaagccattcagcaaacaatagttttggtaaggtgctttgatgagtctct |
45604497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 262
Target Start/End: Complemental strand, 20070264 - 20070142
Alignment:
| Q |
140 |
ttcttgaaaagctgaattttgatcaaatccatttctcatgaccaaagattcaactgaatttgaagagttcctattattaacatgatccaatgaaagccat |
239 |
Q |
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| T |
20070264 |
ttcttgaaaaattaaattttgatcatagccatttttcaagaccaaagaatcatctgaatttagagagttgcaaccatttacttgatctagtgaaagccac |
20070165 |
T |
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| Q |
240 |
tcagcaaacaatagttttggtaa |
262 |
Q |
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| T |
20070164 |
tcagaaaataaaagttttggtaa |
20070142 |
T |
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