View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12363_high_1_N (Length: 354)
Name: NF12363_high_1_N
Description: NF12363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12363_high_1_N |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 29281867 - 29281514
Alignment:
| Q |
1 |
aaattagattatgacaaccttttccctccccttactatttctcttactttttgaggtacaatctcatgcagagaacatggaccatggggcccacataaca |
100 |
Q |
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| T |
29281867 |
aaattagattatgacaaccttttccctccccttactatttctcttactttttgagggacaatctcatgcagagaacatggaccatggggcccacattaca |
29281768 |
T |
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| Q |
101 |
caatcaccaacctatttattcagaagaataccacaataagagggtccaccatcaattaatgctgacttggcaatatgatgatacaaaacgtgaaaagatg |
200 |
Q |
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| T |
29281767 |
caatcaccaacctatttgttcagaagaatgccacaataagagggtctaccatcaattaatgctgacttggcaatatgatgatacagaacatgaaaagatg |
29281668 |
T |
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| Q |
201 |
gacatgcccaaattcaggattgatggttcatccttttattggatccctttgtaatattttattactaatttccttttcttttttcatggaagttaatttg |
300 |
Q |
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| T |
29281667 |
gacatgcccaaattcaggattgatggttcatccttttattggatccctttgtaatattttattactaatttccttttcttttttcatggaagttaatttg |
29281568 |
T |
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| Q |
301 |
tcacaatcataaaaacttcaattgacacagaagaatttaatcatttagaaagta |
354 |
Q |
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| T |
29281567 |
tcacaatcataaaaacttcaattgacacagaagaatttaatcatttagaaagta |
29281514 |
T |
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Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 83 - 214
Target Start/End: Original strand, 6470481 - 6470612
Alignment:
| Q |
83 |
catggggcccacataacacaatcaccaacctatttattcagaagaataccacaataagagggtccaccatcaattaatgctgacttggcaatatgatgat |
182 |
Q |
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| T |
6470481 |
catggggcatacattacacaatcaccaaacaatttgctcaaaagaatgccacgataagagggatcatcatcaattcatgctgacttggcaatatgatgat |
6470580 |
T |
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| Q |
183 |
acaaaacgtgaaaagatggacatgcccaaatt |
214 |
Q |
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| T |
6470581 |
gcaaaacatgaaaagatggacatgcccaaatt |
6470612 |
T |
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