View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12363_high_2 (Length: 341)
Name: NF12363_high_2
Description: NF12363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12363_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 152 - 314
Target Start/End: Original strand, 2634665 - 2634825
Alignment:
| Q |
152 |
ttaaaaattaattgtttgctttttataattctgttggaccacaccaattggtttccaatggaagtagtattgttccaagttcaaattaaggctttataaa |
251 |
Q |
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| T |
2634665 |
ttaaaaattgattgtttgctttttataattttgttggaccacaccaattggtttccaatggaagtagtaatcttcaaagttcaaattaaggctttataaa |
2634764 |
T |
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| Q |
252 |
tagcagcactagggattttggaatatcacagttagatatattttaaggaaacaaaagaaggag |
314 |
Q |
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| T |
2634765 |
tagcagcactagggattttgggatatcacagttag--ttattttaaggaaataaaagaaggag |
2634825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 218 - 281
Target Start/End: Original strand, 2632072 - 2632136
Alignment:
| Q |
218 |
gtattgttccaagttcaaattaaggctttataaatagc-agcactagggattttggaatatcaca |
281 |
Q |
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| T |
2632072 |
gtattgttccgagttcaaattaaggctttataaacaacaagcactagggattttgggatatcaca |
2632136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 57
Target Start/End: Original strand, 2634631 - 2634664
Alignment:
| Q |
24 |
aaatagaaataaagggaacccatttgaagtaatt |
57 |
Q |
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| T |
2634631 |
aaatagaaataaagggaatccatttgaagtaatt |
2634664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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