View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12363_high_3 (Length: 339)

Name: NF12363_high_3
Description: NF12363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12363_high_3
NF12363_high_3
[»] chr7 (2 HSPs)
chr7 (143-339)||(3596842-3597037)
chr7 (13-144)||(3597106-3597237)
[»] chr4 (3 HSPs)
chr4 (143-336)||(46331823-46332016)
chr4 (36-94)||(21691160-21691218)
chr4 (47-123)||(50061558-50061633)
[»] chr8 (3 HSPs)
chr8 (60-123)||(29512905-29512968)
chr8 (47-108)||(44140994-44141055)
chr8 (79-123)||(19649260-19649304)
[»] scaffold0009 (1 HSPs)
scaffold0009 (79-123)||(199360-199404)
[»] chr2 (2 HSPs)
chr2 (79-123)||(23377579-23377623)
chr2 (36-102)||(33019096-33019162)
[»] chr6 (2 HSPs)
chr6 (36-102)||(4910987-4911053)
chr6 (36-100)||(4908041-4908105)
[»] chr1 (3 HSPs)
chr1 (42-102)||(2099627-2099687)
chr1 (42-102)||(30557587-30557647)
chr1 (36-68)||(34875063-34875095)


Alignment Details
Target: chr7 (Bit Score: 156; Significance: 8e-83; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 143 - 339
Target Start/End: Complemental strand, 3597037 - 3596842
Alignment:
Q  143 tatatccctatgcaagtctgaactgatcttggnnnnnnnntcaattttacctttctatgatcacttttacttcacaaaagtcaaacatgtttggttgtga 242  Q
    ||||||||||||||||||| ||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3597037 tatatccctatgcaagtctcaactgatcttggaaaaaaa-tcaattttacctttctatgatcacttttacttcacaaaagtcaaacatgtttggttgtga 3596939  T
Q  243 cttgtgattatttcagtcccccaaagttaatattattttattatttattcctcttcttagatattcacattttgatctcaacagctgatgttattat 339  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  3596938 cttgtgattatttcagtcccccaaagttaagattattttattatttattcctcttcttagatattcacattttgatctcaacaactgatgttattat 3596842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 13 - 144
Target Start/End: Complemental strand, 3597237 - 3597106
Alignment:
Q  13 aatataatgtttttaagaatcaattttgcatgaatttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaattaattcttcccaccgta 112  Q
    |||||||||||||||| |||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3597237 aatataatgtttttaaaaatcaattttgcatgaatgtatctaaagacaaatcacttatagtgaaaatcacttttaaccaaaattaattcttcccaccgta 3597138  T
Q  113 caaccaaacacgcacgcaaataggttctggta 144  Q
    ||||||||||||||||||||||||||||||||    
T  3597137 caaccaaacacgcacgcaaataggttctggta 3597106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 126; Significance: 6e-65; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 143 - 336
Target Start/End: Original strand, 46331823 - 46332016
Alignment:
Q  143 tatatccctatgcaagtctgaactgatcttggnnnnnnnntcaattttacctttctatgatcacttttacttcacaaaagtcaaacatgtttggttgtga 242  Q
    ||||||||||||||||||| ||||||||||||        |||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||    
T  46331823 tatatccctatgcaagtctcaactgatcttggaaaaaaa-tcaattttacctttctatgatcacttttacctcacaaaagtcaaacatatttggctgtga 46331921  T
Q  243 cttgtgattatttcagt-cccccaaagttaatattattttattatttattcctcttcttagatattcacattttgatctcaacagctgatgttat 336  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||    
T  46331922 cttgtgattatttcagtccccccaaagttaagattattttattatttactcctcttcttagatattcacattttgatttcaacaactgatgttat 46332016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 94
Target Start/End: Complemental strand, 21691218 - 21691160
Alignment:
Q  36 ttttgcatgaatttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaa 94  Q
    |||| ||||||| |||||||| | ||||||||| |||| | ||||||||||||||||||    
T  21691218 ttttacatgaatatatccaaacacaaatcacttgtagtcagaatcacttttaaccaaaa 21691160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 123
Target Start/End: Complemental strand, 50061633 - 50061558
Alignment:
Q  47 tttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaattaattcttcccaccgtacaaccaaacac 123  Q
    |||||||||| | || |||||| |||| | ||||||||||||||||||| |||||| ||||| | || |||||||||    
T  50061633 tttatccaaacacaattcactt-tagtcagaatcacttttaaccaaaatcaattctccccactgaactaccaaacac 50061558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 123
Target Start/End: Original strand, 29512905 - 29512968
Alignment:
Q  60 aaatcacttatagtgaaaatcacttttaaccaaaattaattcttcccaccgtacaaccaaacac 123  Q
    |||||| || |||| ||||||||||||||||||||| |||||| | ||||| ||||||||||||    
T  29512905 aaatcagttttagtcaaaatcacttttaaccaaaatcaattctccacaccgcacaaccaaacac 29512968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 44141055 - 44140994
Alignment:
Q  47 tttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaattaattcttcccac 108  Q
    |||||||||| | || |||||| |||| | ||||||||||||||||||| |||||| |||||    
T  44141055 tttatccaaacacaattcacttttagtcagaatcacttttaaccaaaatcaattctccccac 44140994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 19649260 - 19649304
Alignment:
Q  79 tcacttttaaccaaaattaattcttcccaccgtacaaccaaacac 123  Q
    ||||||||||||||||| |||| || |||||| ||||||||||||    
T  19649260 tcacttttaaccaaaatcaattttttccaccgcacaaccaaacac 19649304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 199404 - 199360
Alignment:
Q  79 tcacttttaaccaaaattaattcttcccaccgtacaaccaaacac 123  Q
    ||||||||||||||||| ||||||| |||||| ||||||||||||    
T  199404 tcacttttaaccaaaatcaattctttccaccgcacaaccaaacac 199360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 23377579 - 23377623
Alignment:
Q  79 tcacttttaaccaaaattaattcttcccaccgtacaaccaaacac 123  Q
    |||||||||||||||||||||| || |||||| ||||||||||||    
T  23377579 tcacttttaaccaaaattaattttttccaccgcacaaccaaacac 23377623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 102
Target Start/End: Complemental strand, 33019162 - 33019096
Alignment:
Q  36 ttttgcatgaatttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaattaattct 102  Q
    |||| |||||||  ||||||| | ||||||||| |||| | ||||||||||||||||||| ||||||    
T  33019162 ttttacatgaatgcatccaaacacaaatcacttttagtcagaatcacttttaaccaaaatcaattct 33019096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 4910987 - 4911053
Alignment:
Q  36 ttttgcatgaatttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaattaattct 102  Q
    |||| ||| ||| |||||||| | ||||||||| |||| | ||| ||||||||||||||||||||||    
T  4910987 ttttacataaatgtatccaaacataaatcacttttagtcagaattacttttaaccaaaattaattct 4911053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 100
Target Start/End: Original strand, 4908041 - 4908105
Alignment:
Q  36 ttttgcatgaatttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaattaatt 100  Q
    |||| ||||| |||||||||| | ||||||||| |||  | ||||||||||||||||||| ||||    
T  4908041 ttttacatgattttatccaaacacaaatcacttttaggaagaatcacttttaaccaaaatcaatt 4908105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 2099687 - 2099627
Alignment:
Q  42 atgaatttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaattaattct 102  Q
    |||||| |||||||| | ||||||||| || | ||||| ||||||||||||||| ||||||    
T  2099687 atgaatgtatccaaacacaaatcacttttactcaaaattacttttaaccaaaatcaattct 2099627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 30557587 - 30557647
Alignment:
Q  42 atgaatttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaattaattct 102  Q
    |||||| |||||||| | ||||||||| |||| | | ||||||||||||||||| ||||||    
T  30557587 atgaatgtatccaaacacaaatcacttctagtcagagtcacttttaaccaaaatcaattct 30557647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 34875095 - 34875063
Alignment:
Q  36 ttttgcatgaatttatccaaagaaaaatcactt 68  Q
    ||||||||||||||||||||||| |||||||||    
T  34875095 ttttgcatgaatttatccaaagataaatcactt 34875063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University