View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12363_low_1 (Length: 564)
Name: NF12363_low_1
Description: NF12363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12363_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 11 - 547
Target Start/End: Original strand, 29281332 - 29281868
Alignment:
| Q |
11 |
cagagacagtggaacttaatgtgaatatgcattgtgaggcttgtgctgagcaactcaagagaaagatactccaaatgagaggtatactttgtttcttctt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29281332 |
cagagacagtggaacttaatgtgaatatgcattgtgaggcttgtgctgagcaactcaagagaaagatactccaaatgagaggtatactttgtttcttctt |
29281431 |
T |
|
| Q |
111 |
gatttcaatatgattgttataataattttacttcttattgagaaaaggacatgtagagataaaaggggaagaaatagacagttactttctaaatgattaa |
210 |
Q |
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||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29281432 |
gatttcaatataattgttgtaataattttacttcttattgagaaaaggacatgtagagataaaaggggaagaaatagacagttactttctaaatgattaa |
29281531 |
T |
|
| Q |
211 |
attcttctgtgtcaattgaagtttttatgattgtgacaaattaacttccatgaaaaaagaaaaggaaattagtaataaaatattacaaagggatccaata |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29281532 |
attcttctgtgtcaattgaagtttttatgattgtgacaaattaacttccatgaaaaaagaaaaggaaattagtaataaaatattacaaagggatccaata |
29281631 |
T |
|
| Q |
311 |
aaaggatgaaccatcaatcctgaatttgggcatgtccatcttttcatgttttgtatcatcatattgccaagtcagcattaattgatggtggaccctctta |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
29281632 |
aaaggatgaaccatcaatcctgaatttgggcatgtccatcttttcatgttctgtatcatcatattgccaagtcagcattaattgatggtagaccctctta |
29281731 |
T |
|
| Q |
411 |
ttgtggtattcttctgaataaataggttggtgattgtgttatgtgggccccatggtccatgttctctgcatgagattgtacctcaaaaagtaagagaaat |
510 |
Q |
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| T |
29281732 |
ttgtggcattcttctgaacaaataggttggtgattgtgtaatgtgggccccatggtccatgttctctgcatgagattgtccctcaaaaagtaagagaaat |
29281831 |
T |
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| Q |
511 |
agtaaggggagggaaaaggttgtcataatctaatttt |
547 |
Q |
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| T |
29281832 |
agtaaggggagggaaaaggttgtcataatctaatttt |
29281868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 333 - 464
Target Start/End: Complemental strand, 6470612 - 6470481
Alignment:
| Q |
333 |
aatttgggcatgtccatcttttcatgttttgtatcatcatattgccaagtcagcattaattgatggtggaccctcttattgtggtattcttctgaataaa |
432 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| || ||||||||| |||| |||||| ||| ||| |
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| T |
6470612 |
aatttgggcatgtccatcttttcatgttttgcatcatcatattgccaagtcagcatgaattgatgatgatccctcttatcgtggcattcttttgagcaaa |
6470513 |
T |
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| Q |
433 |
taggttggtgattgtgttatgtgggccccatg |
464 |
Q |
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| | ||||||||||||| |||| |||||||| |
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| T |
6470512 |
ttgtttggtgattgtgtaatgtatgccccatg |
6470481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 6471395 - 6471307
Alignment:
| Q |
16 |
acagtggaacttaatgtgaatatgcattgtgaggcttgtgctgagcaactcaagagaaagatactccaaatgagaggtatactttgttt |
104 |
Q |
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||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
6471395 |
acagtagaacttaatgtgaccatgcattgtgaggcttgtgctgaacaactcaagagaaagatactccaaatgagaggtataatttgttt |
6471307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 42525526 - 42525454
Alignment:
| Q |
22 |
gaacttaatgtgaatatgcattgtgaggcttgtgctgagcaactcaagagaaagatactccaaatgagaggta |
94 |
Q |
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|||||||| ||||| ||||| |||||||||||||||||||| |||||| | ||||||||| |||||| ||||| |
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| T |
42525526 |
gaacttaacgtgaacatgcactgtgaggcttgtgctgagcagctcaaggggaagatactcaaaatgaaaggta |
42525454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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