View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12364_high_4 (Length: 339)

Name: NF12364_high_4
Description: NF12364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12364_high_4
NF12364_high_4
[»] chr2 (13 HSPs)
chr2 (1-50)||(4858211-4858260)
chr2 (4-44)||(11728051-11728091)
chr2 (9-51)||(13850107-13850149)
chr2 (1-50)||(1151627-1151676)
chr2 (1-50)||(34373106-34373155)
chr2 (2-44)||(1096273-1096315)
chr2 (5-51)||(19523324-19523370)
chr2 (1-50)||(25094450-25094499)
chr2 (5-50)||(38724241-38724286)
chr2 (1-50)||(43026034-43026083)
chr2 (1-29)||(7086069-7086097)
chr2 (4-44)||(11152629-11152669)
chr2 (1-29)||(23344934-23344962)
[»] chr7 (10 HSPs)
chr7 (1-76)||(27383812-27383887)
chr7 (1-50)||(11070326-11070375)
chr7 (1-50)||(37970031-37970080)
chr7 (1-44)||(1709382-1709425)
chr7 (1-51)||(47379658-47379708)
chr7 (5-50)||(640494-640539)
chr7 (5-50)||(2600458-2600503)
chr7 (5-38)||(17039259-17039292)
chr7 (1-70)||(35212861-35212930)
chr7 (1-29)||(41077449-41077477)
[»] chr3 (20 HSPs)
chr3 (1-44)||(30664599-30664642)
chr3 (1-51)||(16295562-16295612)
chr3 (1-70)||(34145445-34145512)
chr3 (1-50)||(50025609-50025658)
chr3 (1-44)||(25806454-25806497)
chr3 (4-51)||(42643338-42643385)
chr3 (2-44)||(1261305-1261347)
chr3 (5-51)||(29533863-29533909)
chr3 (37-75)||(42643383-42643421)
chr3 (2-44)||(43894915-43894957)
chr3 (37-70)||(1261267-1261300)
chr3 (5-50)||(2280279-2280324)
chr3 (6-51)||(9557855-9557900)
chr3 (1-38)||(14838981-14839018)
chr3 (1-50)||(25559802-25559851)
chr3 (1-50)||(38471740-38471789)
chr3 (1-38)||(44689901-44689938)
chr3 (1-76)||(26548674-26548747)
chr3 (1-29)||(28300591-28300619)
chr3 (5-37)||(51385377-51385409)
[»] chr1 (14 HSPs)
chr1 (37-76)||(37741838-37741877)
chr1 (1-50)||(2827634-2827683)
chr1 (1-50)||(40053004-40053053)
chr1 (1-50)||(46903568-46903617)
chr1 (3-51)||(43757686-43757734)
chr1 (1-44)||(12972636-12972679)
chr1 (1-44)||(29638813-29638856)
chr1 (1-44)||(50460642-50460685)
chr1 (1-51)||(27787587-27787637)
chr1 (1-51)||(37741875-37741925)
chr1 (1-51)||(51436354-51436404)
chr1 (2-50)||(6396426-6396474)
chr1 (44-76)||(8312298-8312330)
chr1 (4-44)||(27954329-27954369)
[»] chr5 (9 HSPs)
chr5 (1-51)||(5005211-5005261)
chr5 (1-44)||(1108096-1108139)
chr5 (1-44)||(8442257-8442300)
chr5 (5-44)||(9940156-9940195)
chr5 (4-50)||(8761748-8761794)
chr5 (5-50)||(3518285-3518330)
chr5 (5-50)||(10469871-10469916)
chr5 (1-50)||(35358859-35358908)
chr5 (1-29)||(125190-125218)
[»] chr4 (11 HSPs)
chr4 (5-50)||(1987637-1987682)
chr4 (1-50)||(46309047-46309096)
chr4 (2-50)||(6093529-6093577)
chr4 (2-50)||(30250222-30250270)
chr4 (1-51)||(36947015-36947065)
chr4 (9-66)||(54803240-54803295)
chr4 (5-50)||(9827909-9827954)
chr4 (5-38)||(29577372-29577405)
chr4 (37-70)||(36946984-36947017)
chr4 (1-29)||(25523141-25523169)
chr4 (1-29)||(38844435-38844463)
[»] chr8 (10 HSPs)
chr8 (2-38)||(34247873-34247909)
chr8 (5-44)||(6243136-6243175)
chr8 (5-51)||(43590796-43590842)
chr8 (5-50)||(5742581-5742626)
chr8 (37-70)||(38939084-38939117)
chr8 (1-29)||(896005-896033)
chr8 (1-29)||(24503015-24503043)
chr8 (1-29)||(27631045-27631073)
chr8 (1-29)||(32725727-32725755)
chr8 (4-52)||(32777984-32778032)
[»] scaffold0154 (1 HSPs)
scaffold0154 (1-32)||(9790-9821)
[»] chr6 (2 HSPs)
chr6 (5-68)||(12151763-12151826)
chr6 (1-29)||(34021117-34021145)
[»] scaffold0592 (1 HSPs)
scaffold0592 (1-39)||(1008-1046)
[»] scaffold0036 (1 HSPs)
scaffold0036 (4-50)||(54586-54632)


Alignment Details
Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 4858211 - 4858260
Alignment:
Q  1 ctctattgtttttgaccaatgaaaagagaaaacaacaaaattgtatcaaa 50  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  4858211 ctctattgtttttgaccaatgaaaagagagaacaacaaaattgtctcaaa 4858260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 11728091 - 11728051
Alignment:
Q  4 tattgtttttgaccaatgaaaagagaaaacaacaaaattgt 44  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  11728091 tattgtttttgaccaatgaaaagagaaaacaacaaagttgt 11728051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 13850149 - 13850107
Alignment:
Q  9 tttttgaccaatgaaaagagaaaacaacaaaattgtatcaaaa 51  Q
    ||||||||||||||||||||| |||||||||||||| ||||||    
T  13850149 tttttgaccaatgaaaagagagaacaacaaaattgtctcaaaa 13850107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 1151627 - 1151676
Alignment:
Q  1 ctctattgtttttgaccaatgaaaagagaaaacaacaaaattgtatcaaa 50  Q
    ||||||||||||||||||||||||| ||| ||||||||| |||| |||||    
T  1151627 ctctattgtttttgaccaatgaaaaaagagaacaacaaagttgtctcaaa 1151676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 34373106 - 34373155
Alignment:
Q  1 ctctattgtttttgaccaatgaaaagagaaaacaacaaaattgtatcaaa 50  Q
    |||||||||||||||||||||| |||||| ||||||||| |||| |||||    
T  34373106 ctctattgtttttgaccaatgagaagagagaacaacaaagttgtctcaaa 34373155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 1096315 - 1096273
Alignment:
Q  2 tctattgtttttgaccaatgaaaagagaaaacaacaaaattgt 44  Q
    ||||||||||||||||||| | ||||||| |||||||||||||    
T  1096315 tctattgtttttgaccaataagaagagaacacaacaaaattgt 1096273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 19523370 - 19523324
Alignment:
Q  5 attgtttttgaccaatgaaaagagaaaacaacaaaattgtatcaaaa 51  Q
    |||||||||||||||| |||||||| ||||| ||||||||| |||||    
T  19523370 attgtttttgaccaataaaaagagagaacaataaaattgtaccaaaa 19523324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 25094450 - 25094499
Alignment:
Q  1 ctctattgtttttgaccaatgaaaagagaaaacaacaaaattgtatcaaa 50  Q
    |||||||||||||||||||| | |||||| ||||||||| |||| |||||    
T  25094450 ctctattgtttttgaccaattagaagagagaacaacaaagttgtctcaaa 25094499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 38724286 - 38724241
Alignment:
Q  5 attgtttttgaccaatgaaaagagaaaacaacaaaattgtatcaaa 50  Q
    ||||||||||||||||||| ||||| ||||||||| |||| |||||    
T  38724286 attgtttttgaccaatgaatagagagaacaacaaagttgtctcaaa 38724241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 43026034 - 43026083
Alignment:
Q  1 ctctattgtttttgaccaatgaaaagagaaaacaacaaaattgtatcaaa 50  Q
    ||||||||||||| |||||||| |||||| ||||||||| |||| |||||    
T  43026034 ctctattgtttttaaccaatgagaagagagaacaacaaagttgtctcaaa 43026083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 7086097 - 7086069
Alignment:
Q  1 ctctattgtttttgaccaatgaaaagaga 29  Q
    |||||||||||||||||||||||||||||    
T  7086097 ctctattgtttttgaccaatgaaaagaga 7086069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 11152669 - 11152629
Alignment:
Q  4 tattgtttttgaccaatgaaaagagaaaacaacaaaattgt 44  Q
    ||||||||||||||||| ||||||||| ||||||| |||||    
T  11152669 tattgtttttgaccaataaaaagagaacacaacaagattgt 11152629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 23344962 - 23344934
Alignment:
Q  1 ctctattgtttttgaccaatgaaaagaga 29  Q
    |||||||||||||||||||||||||||||    
T  23344962 ctctattgtttttgaccaatgaaaagaga 23344934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 27383887 - 27383812
Alignment:
Q  1 ctctattgtttttgaccaatgaaaagagaaaacaacaaaattgtatcaaaatggttgtcaaaatatcactcctcta 76  Q
    ||||||| |||||||||||| | |||||| ||||||||| ||||| |||||||||||| ||||||| ||| |||||    
T  27383887 ctctattatttttgaccaattagaagagagaacaacaaagttgtaccaaaatggttgttaaaatattactactcta 27383812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 11070326 - 11070375
Alignment:
Q  1 ctctattgtttttgaccaatgaaaagagaaaacaacaaaattgtatcaaa 50  Q
    ||||||||||||||||||||||||||||| || |||||| |||| |||||    
T  11070326 ctctattgtttttgaccaatgaaaagagagaagaacaaagttgtctcaaa 11070375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 37970031 - 37970080
Alignment:
Q  1 ctctattgtttttgaccaatgaaaagagaaaacaacaaaattgtatcaaa 50  Q
    |||||||||||||||||||||| |||||| ||||||||| |||| |||||    
T  37970031 ctctattgtttttgaccaatgagaagagagaacaacaaagttgtctcaaa 37970080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 1709382 - 1709425
Alignment:
Q  1 ctctattgtttttgaccaatgaaaagagaaaacaacaaaattgt 44  Q
    |||||||||||||||||||| ||||||||| ||||||| |||||    
T  1709382 ctctattgtttttgaccaataaaaagagaacacaacaagattgt 1709425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 47379658 - 47379708
Alignment:
Q  1 ctctattgtttttgaccaatgaaaagagaaaacaacaaaattgtatcaaaa 51  Q
    ||||||||||||| |||||||| |||||| ||||||||| |||| ||||||    
T  47379658 ctctattgtttttaaccaatgagaagagagaacaacaaagttgtctcaaaa 47379708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 640494 - 640539
Alignment:
Q  5 attgtttttgaccaatgaaaagagaaaacaacaaaattgtatcaaa 50  Q
    |||||||||||||||||| |||||| ||||||||| |||| |||||    
T  640494 attgtttttgaccaatgagaagagagaacaacaaagttgtctcaaa 640539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 2600503 - 2600458
Alignment:
Q  5 attgtttttgaccaatgaaaagagaaaacaacaaaattgtatcaaa 50  Q
    |||||||||||||||||| |||||| ||||||||| |||| |||||    
T  2600503 attgtttttgaccaatgagaagagagaacaacaaagttgtctcaaa 2600458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 17039259 - 17039292
Alignment:
Q  5 attgtttttgaccaatgaaaagagaaaacaacaa 38  Q
    |||||||||||||||||||||||||| |||||||    
T  17039259 attgtttttgaccaatgaaaagagaacacaacaa 17039292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 35212930 - 35212861
Alignment:
Q  1 ctctattgtttttgaccaatgaaaagagaaaacaacaaaattgtatcaaaatggttgtcaaaatatcact 70  Q
    ||||||| ||||| |||||||| |||||| ||||||||| |||||  |||||  ||||||||||| ||||    
T  35212930 ctctattatttttaaccaatgagaagagagaacaacaaagttgtactaaaataattgtcaaaataacact 35212861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 41077477 - 41077449
Alignment:
Q  1 ctctattgtttttgaccaatgaaaagaga 29  Q
    |||||||||||||||||||||||||||||    
T  41077477 ctctattgtttttgaccaatgaaaagaga 41077449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 30664599 - 30664642
Alignment:
Q  1 ctctattgtttttgaccaatgaaaagagaaaacaacaaaattgt 44  Q
    |||||||||||||||||||| ||||||||| |||||||||||||    
T  30664599 ctctattgtttttgaccaataaaaagagaacacaacaaaattgt 30664642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 16295562 - 16295612
Alignment:
Q  1 ctctattgtttttgaccaatgaaaagagaaaacaacaaaattgtatcaaaa 51  Q
    |||||||||||||||||||| |||||||| ||||||||| |||| ||||||    
T  16295562 ctctattgtttttgaccaataaaaagagagaacaacaaagttgtctcaaaa 16295612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 34145512 - 34145445
Alignment:
Q  1 ctctattgtttttgaccaatgaaaagagaaaacaacaaaattgtatcaaaatggttgtcaaaatatcact 70  Q
    ||||||| |||||||||||| |||||||| ||||| ||| ||  || |||||||||||||||||||||||    
T  34145512 ctctattatttttgaccaataaaaagagataacaataaagtt--attaaaatggttgtcaaaatatcact 34145445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 50025658 - 50025609
Alignment:
Q  1 ctctattgtttttgaccaatgaaaagagaaaacaacaaaattgtatcaaa 50  Q
    |||||||||||||||||||||| |||||| ||||||||| |||| |||||    
T  50025658 ctctattgtttttgaccaatgagaagagagaacaacaaagttgtctcaaa 50025609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 25806497 - 25806454
Alignment:
Q  1 ctctattgtttttgaccaatgaaaagagaaaacaacaaaattgt 44  Q
    |||||||||||||||||||| |||| ||| ||||||||||||||    
T  25806497 ctctattgtttttgaccaataaaaaaagagaacaacaaaattgt 25806454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 42643338 - 42643385
Alignment:
Q  4 tattgtttttgaccaatgaaaagagaaaacaacaaaattgtatcaaaa 51  Q
    ||||||||||||| ||||| |||||| |||||||||||||| ||||||    
T  42643338 tattgtttttgacaaatgagaagagagaacaacaaaattgtctcaaaa 42643385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 1261347 - 1261305
Alignment:
Q  2 tctattgtttttgaccaatgaaaagagaaaacaacaaaattgt 44  Q
    |||||||||||| |||||||| |||||||||||||||| ||||    
T  1261347 tctattgtttttaaccaatgagaagagaaaacaacaaagttgt 1261305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 29533863 - 29533909
Alignment:
Q  5 attgtttttgaccaatgaaaagagaaaacaacaaaattgtatcaaaa 51  Q
    |||||||||||||||||| |||||| ||||||||| |||| ||||||    
T  29533863 attgtttttgaccaatgagaagagagaacaacaaagttgtctcaaaa 29533909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 75
Target Start/End: Original strand, 42643383 - 42643421
Alignment:
Q  37 aaaattgtatcaaaatggttgtcaaaatatcactcctct 75  Q
    |||||| ||||||||||||||||||||||||||| ||||    
T  42643383 aaaattatatcaaaatggttgtcaaaatatcactgctct 42643421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 43894957 - 43894915
Alignment:
Q  2 tctattgtttttgaccaatgaaaagagaaaacaacaaaattgt 44  Q
    ||||||||||||||||||||||||||||  |||||||| ||||    
T  43894957 tctattgtttttgaccaatgaaaagagagcacaacaaagttgt 43894915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 70
Target Start/End: Complemental strand, 1261300 - 1261267
Alignment:
Q  37 aaaattgtatcaaaatggttgtcaaaatatcact 70  Q
    ||||||||||||| ||||||||||||||||||||    
T  1261300 aaaattgtatcaacatggttgtcaaaatatcact 1261267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 2280279 - 2280324
Alignment:
Q  5 attgtttttgaccaatgaaaagagaaaacaacaaaattgtatcaaa 50  Q
    |||||||||||||||||| |||||| ||||||||| |||| |||||    
T  2280279 attgtttttgaccaatgagaagagagaacaacaaagttgtctcaaa 2280324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 9557900 - 9557855
Alignment:
Q  6 ttgtttttgaccaatgaaaagagaaaacaacaaaattgtatcaaaa 51  Q
    |||||||| |||||||| |||||| |||||||||||||| ||||||    
T  9557900 ttgtttttaaccaatgagaagagagaacaacaaaattgtctcaaaa 9557855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 14839018 - 14838981
Alignment:
Q  1 ctctattgtttttgaccaatgaaaagagaaaacaacaa 38  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  14839018 ctctattgtttttgaccaataaaaagagaacacaacaa 14838981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 25559802 - 25559851
Alignment:
Q  1 ctctattgtttttgaccaatgaaaagagaaaacaacaaaattgtatcaaa 50  Q
    ||||||||||||||| |||||| |||||| ||||| |||||||| |||||    
T  25559802 ctctattgtttttgatcaatgagaagagagaacaataaaattgtctcaaa 25559851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 38471740 - 38471789
Alignment:
Q  1 ctctattgtttttgaccaatgaaaagagaaaacaacaaaattgtatcaaa 50  Q
    ||||||||||||| |||||||| |||||| ||||||||| |||| |||||    
T  38471740 ctctattgtttttaaccaatgagaagagagaacaacaaagttgtctcaaa 38471789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 44689901 - 44689938
Alignment:
Q  1 ctctattgtttttgaccaatgaaaagagaaaacaacaa 38  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  44689901 ctctattgtttttgaccaataaaaagagaacacaacaa 44689938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 26548747 - 26548674
Alignment:
Q  1 ctctattgtttttgaccaatgaaaagagaaaacaacaaaattgtatcaaaatggttgtcaaaatatcactcctcta 76  Q
    |||||||| |||||||||||| ||| ||||||||  ||  ||||| ||||||| |||||||| ||||||| |||||    
T  26548747 ctctattggttttgaccaatggaaaaagaaaaca--aaggttgtaccaaaatgattgtcaaattatcactactcta 26548674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 28300619 - 28300591
Alignment:
Q  1 ctctattgtttttgaccaatgaaaagaga 29  Q
    |||||||||||||||||||||||||||||    
T  28300619 ctctattgtttttgaccaatgaaaagaga 28300591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 51385409 - 51385377
Alignment:
Q  5 attgtttttgaccaatgaaaagagaaaacaaca 37  Q
    ||||||||||||||||||||||||| |||||||    
T  51385409 attgtttttgaccaatgaaaagagagaacaaca 51385377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 76
Target Start/End: Complemental strand, 37741877 - 37741838
Alignment:
Q  37 aaaattgtatcaaaatggttgtcaaaatatcactcctcta 76  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  37741877 aaaattgtatcaaaatggttgtcaaaatatcactactcta 37741838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 2827683 - 2827634
Alignment:
Q  1 ctctattgtttttgaccaatgaaaagagaaaacaacaaaattgtatcaaa 50  Q
    |||||||||||||||||||| | |||||| |||||||||||||| |||||    
T  2827683 ctctattgtttttgaccaataagaagagagaacaacaaaattgtctcaaa 2827634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 40053004 - 40053053
Alignment:
Q  1 ctctattgtttttgaccaatgaaaagagaaaacaacaaaattgtatcaaa 50  Q
    ||||||| ||||||||||||||||||||| ||||||||| |||| |||||    
T  40053004 ctctattatttttgaccaatgaaaagagagaacaacaaagttgtctcaaa 40053053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 46903568 - 46903617
Alignment:
Q  1 ctctattgtttttgaccaatgaaaagagaaaacaacaaaattgtatcaaa 50  Q
    |||||||||||||||||||||| |||||| ||||||||| |||| |||||    
T  46903568 ctctattgtttttgaccaatgagaagagagaacaacaaagttgtctcaaa 46903617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 43757686 - 43757734
Alignment:
Q  3 ctattgtttttgaccaatgaaaagagaaaacaacaaaattgtatcaaaa 51  Q
    ||||||||||| ||||||||||||||| ||||||||| |||| ||||||    
T  43757686 ctattgtttttaaccaatgaaaagagagaacaacaaagttgtctcaaaa 43757734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 12972679 - 12972636
Alignment:
Q  1 ctctattgtttttgaccaatgaaaagagaaaacaacaaaattgt 44  Q
    |||||||||||||||||||| |||| |||| |||||||||||||    
T  12972679 ctctattgtttttgaccaataaaaaaagaacacaacaaaattgt 12972636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 29638813 - 29638856
Alignment:
Q  1 ctctattgtttttgaccaatgaaaagagaaaacaacaaaattgt 44  Q
    |||||||||||||||||||| | ||||||| |||||||||||||    
T  29638813 ctctattgtttttgaccaataagaagagaacacaacaaaattgt 29638856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 50460685 - 50460642
Alignment:
Q  1 ctctattgtttttgaccaatgaaaagagaaaacaacaaaattgt 44  Q
    |||||||||||||||||||| |||||| || |||||||||||||    
T  50460685 ctctattgtttttgaccaataaaaagaaaacacaacaaaattgt 50460642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 27787587 - 27787637
Alignment:
Q  1 ctctattgtttttgaccaatgaaaagagaaaacaacaaaattgtatcaaaa 51  Q
    |||||||||||||||| ||||| |||||| ||||||||| |||| ||||||    
T  27787587 ctctattgtttttgacaaatgagaagagagaacaacaaagttgtctcaaaa 27787637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 37741925 - 37741875
Alignment:
Q  1 ctctattgtttttgaccaatgaaaagagaaaacaacaaaattgtatcaaaa 51  Q
    ||||||||||||| |||||||| |||||| ||||||||| |||| ||||||    
T  37741925 ctctattgtttttaaccaatgagaagagagaacaacaaagttgtctcaaaa 37741875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 51436404 - 51436354
Alignment:
Q  1 ctctattgtttttgaccaatgaaaagagaaaacaacaaaattgtatcaaaa 51  Q
    ||||||||||||| |||||||| |||||| ||||||||| |||| ||||||    
T  51436404 ctctattgtttttaaccaatgagaagagagaacaacaaagttgtctcaaaa 51436354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 6396426 - 6396474
Alignment:
Q  2 tctattgtttttgaccaatgaaaagagaaaacaacaaaattgtatcaaa 50  Q
    |||||||||||| |||||||| |||||| ||||||||| |||| |||||    
T  6396426 tctattgtttttaaccaatgagaagagagaacaacaaagttgtctcaaa 6396474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 76
Target Start/End: Original strand, 8312298 - 8312330
Alignment:
Q  44 tatcaaaatggttgtcaaaatatcactcctcta 76  Q
    ||||||||||||||||||||||||||| |||||    
T  8312298 tatcaaaatggttgtcaaaatatcactactcta 8312330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 27954329 - 27954369
Alignment:
Q  4 tattgtttttgaccaatgaaaagagaaaacaacaaaattgt 44  Q
    ||||||||||||||||||| |||||| ||||||||| ||||    
T  27954329 tattgtttttgaccaatgagaagagagaacaacaaagttgt 27954369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 5005211 - 5005261
Alignment:
Q  1 ctctattgtttttgaccaatgaaaagagaaaacaacaaaattgtatcaaaa 51  Q
    |||||||||||||||||||||| |||||| ||||||||| |||| ||||||    
T  5005211 ctctattgtttttgaccaatgataagagagaacaacaaagttgtctcaaaa 5005261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 1108096 - 1108139
Alignment:
Q  1 ctctattgtttttgaccaatgaaaagagaaaacaacaaaattgt 44  Q
    |||||||||||||||||||||| |||||| ||||||||| ||||    
T  1108096 ctctattgtttttgaccaatgagaagagagaacaacaaagttgt 1108139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 8442257 - 8442300
Alignment:
Q  1 ctctattgtttttgaccaatgaaaagagaaaacaacaaaattgt 44  Q
    ||||||||||| |||||||||| |||||| ||||||||||||||    
T  8442257 ctctattgtttctgaccaatgagaagagagaacaacaaaattgt 8442300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 9940156 - 9940195
Alignment:
Q  5 attgtttttgaccaatgaaaagagaaaacaacaaaattgt 44  Q
    ||||||||||||||||||||||||| ||||||||| ||||    
T  9940156 attgtttttgaccaatgaaaagagagaacaacaaagttgt 9940195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 8761748 - 8761794
Alignment:
Q  4 tattgtttttgaccaatgaaaagagaaaacaacaaaattgtatcaaa 50  Q
    |||| ||||||||||||||||||||| ||||||||| |||| |||||    
T  8761748 tattatttttgaccaatgaaaagagagaacaacaaagttgtctcaaa 8761794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 3518285 - 3518330
Alignment:
Q  5 attgtttttgaccaatgaaaagagaaaacaacaaaattgtatcaaa 50  Q
    |||||||||||||||||| |||||| ||||||||| |||| |||||    
T  3518285 attgtttttgaccaatgagaagagagaacaacaaagttgtctcaaa 3518330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 10469916 - 10469871
Alignment:
Q  5 attgtttttgaccaatgaaaagagaaaacaacaaaattgtatcaaa 50  Q
    |||||||||||||||||| |||||| ||||||||| |||| |||||    
T  10469916 attgtttttgaccaatgagaagagagaacaacaaagttgtctcaaa 10469871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 35358908 - 35358859
Alignment:
Q  1 ctctattgtttttgaccaatgaaaagagaaaacaacaaaattgtatcaaa 50  Q
    |||||||||||||| ||||||| |||||| ||||||||| |||| |||||    
T  35358908 ctctattgtttttgtccaatgagaagagagaacaacaaagttgtctcaaa 35358859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 125190 - 125218
Alignment:
Q  1 ctctattgtttttgaccaatgaaaagaga 29  Q
    |||||||||||||||||||||||||||||    
T  125190 ctctattgtttttgaccaatgaaaagaga 125218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 1987682 - 1987637
Alignment:
Q  5 attgtttttgaccaatgaaaagagaaaacaacaaaattgtatcaaa 50  Q
    ||||||||||||||||||||||||| ||||||||| |||| |||||    
T  1987682 attgtttttgaccaatgaaaagagagaacaacaaagttgtctcaaa 1987637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 46309096 - 46309047
Alignment:
Q  1 ctctattgtttttgaccaatgaaaagagaaaacaacaaaattgtatcaaa 50  Q
    ||||||||||||||||||||||||||||| ||| ||||| |||| |||||    
T  46309096 ctctattgtttttgaccaatgaaaagagagaactacaaagttgtctcaaa 46309047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 6093577 - 6093529
Alignment:
Q  2 tctattgtttttgaccaatgaaaagagaaaacaacaaaattgtatcaaa 50  Q
    |||||||||||||||| || |||||||| |||||||||||||| |||||    
T  6093577 tctattgtttttgaccgataaaaagagagaacaacaaaattgtctcaaa 6093529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 30250270 - 30250222
Alignment:
Q  2 tctattgtttttgaccaatgaaaagagaaaacaacaaaattgtatcaaa 50  Q
    ||||||||||||||||||| |||||||| ||||||||| |||| |||||    
T  30250270 tctattgtttttgaccaataaaaagagagaacaacaaagttgtctcaaa 30250222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 36947065 - 36947015
Alignment:
Q  1 ctctattgtttttgaccaatgaaaagagaaaacaacaaaattgtatcaaaa 51  Q
    ||||||||||||||| |||| |||||||| |||||||||||| | ||||||    
T  36947065 ctctattgtttttgatcaataaaaagagagaacaacaaaattatctcaaaa 36947015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 54803295 - 54803240
Alignment:
Q  9 tttttgaccaatgaaaagagaaaacaacaaaattgtatcaaaatggttgtcaaaatat 66  Q
    ||||||||||||||||||||| ||||||||| |||| ||  ||||||| |||||||||    
T  54803295 tttttgaccaatgaaaagagagaacaacaaagttgtctc--aatggttatcaaaatat 54803240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 9827954 - 9827909
Alignment:
Q  5 attgtttttgaccaatgaaaagagaaaacaacaaaattgtatcaaa 50  Q
    |||||||||||||||||| |||||| ||||||||| |||| |||||    
T  9827954 attgtttttgaccaatgagaagagataacaacaaagttgtctcaaa 9827909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 29577405 - 29577372
Alignment:
Q  5 attgtttttgaccaatgaaaagagaaaacaacaa 38  Q
    ||||||||||||||||||||||||| ||||||||    
T  29577405 attgtttttgaccaatgaaaagagagaacaacaa 29577372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 70
Target Start/End: Complemental strand, 36947017 - 36946984
Alignment:
Q  37 aaaattgtatcaaaatggttgtcaaaatatcact 70  Q
    |||||| |||||||||||||||||||||||||||    
T  36947017 aaaattatatcaaaatggttgtcaaaatatcact 36946984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 25523169 - 25523141
Alignment:
Q  1 ctctattgtttttgaccaatgaaaagaga 29  Q
    |||||||||||||||||||||||||||||    
T  25523169 ctctattgtttttgaccaatgaaaagaga 25523141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 38844463 - 38844435
Alignment:
Q  1 ctctattgtttttgaccaatgaaaagaga 29  Q
    |||||||||||||||||||||||||||||    
T  38844463 ctctattgtttttgaccaatgaaaagaga 38844435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 34247873 - 34247909
Alignment:
Q  2 tctattgtttttgaccaatgaaaagagaaaacaacaa 38  Q
    |||||||||||||||||||||||||||| ||||||||    
T  34247873 tctattgtttttgaccaatgaaaagagagaacaacaa 34247909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 6243136 - 6243175
Alignment:
Q  5 attgtttttgaccaatgaaaagagaaaacaacaaaattgt 44  Q
    |||||||||||||||||||||||||  |||||||||||||    
T  6243136 attgtttttgaccaatgaaaagagagcacaacaaaattgt 6243175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 43590796 - 43590842
Alignment:
Q  5 attgtttttgaccaatgaaaagagaaaacaacaaaattgtatcaaaa 51  Q
    |||||||||||||||||||||||||  |||| |||||||| ||||||    
T  43590796 attgtttttgaccaatgaaaagagagcacaataaaattgtctcaaaa 43590842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 5742626 - 5742581
Alignment:
Q  5 attgtttttgaccaatgaaaagagaaaacaacaaaattgtatcaaa 50  Q
    |||||||||||||||||| |||||| ||||||||| |||| |||||    
T  5742626 attgtttttgaccaatgagaagagagaacaacaaagttgtctcaaa 5742581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 70
Target Start/End: Complemental strand, 38939117 - 38939084
Alignment:
Q  37 aaaattgtatcaaaatggttgtcaaaatatcact 70  Q
    ||||||||| ||||||||||||||||||||||||    
T  38939117 aaaattgtaccaaaatggttgtcaaaatatcact 38939084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 896005 - 896033
Alignment:
Q  1 ctctattgtttttgaccaatgaaaagaga 29  Q
    |||||||||||||||||||||||||||||    
T  896005 ctctattgtttttgaccaatgaaaagaga 896033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 24503015 - 24503043
Alignment:
Q  1 ctctattgtttttgaccaatgaaaagaga 29  Q
    |||||||||||||||||||||||||||||    
T  24503015 ctctattgtttttgaccaatgaaaagaga 24503043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 27631045 - 27631073
Alignment:
Q  1 ctctattgtttttgaccaatgaaaagaga 29  Q
    |||||||||||||||||||||||||||||    
T  27631045 ctctattgtttttgaccaatgaaaagaga 27631073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 32725755 - 32725727
Alignment:
Q  1 ctctattgtttttgaccaatgaaaagaga 29  Q
    |||||||||||||||||||||||||||||    
T  32725755 ctctattgtttttgaccaatgaaaagaga 32725727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 32777984 - 32778032
Alignment:
Q  4 tattgtttttgaccaatgaaaagagaaaacaacaaaattgtatcaaaat 52  Q
    ||||||||||||| ||||||||||||  ||||||| ||||| |||||||    
T  32777984 tattgtttttgactaatgaaaagagagcacaacaagattgtctcaaaat 32778032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 9821 - 9790
Alignment:
Q  1 ctctattgtttttgaccaatgaaaagagaaaa 32  Q
    ||||||||||||||||||||||||||||||||    
T  9821 ctctattgtttttgaccaatgaaaagagaaaa 9790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 12151826 - 12151763
Alignment:
Q  5 attgtttttgaccaatgaaaagagaaaacaacaaaattgtatcaaaatggttgtcaaaatatca 68  Q
    |||||||||||||||| | |||||| ||||||||| ||||| |||||| |||||  ||||||||    
T  12151826 attgtttttgaccaataagaagagagaacaacaaagttgtaccaaaatagttgttcaaatatca 12151763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 34021145 - 34021117
Alignment:
Q  1 ctctattgtttttgaccaatgaaaagaga 29  Q
    |||||||||||||||||||||||||||||    
T  34021145 ctctattgtttttgaccaatgaaaagaga 34021117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0592 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0592
Description:

Target: scaffold0592; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 1008 - 1046
Alignment:
Q  1 ctctattgtttttgaccaatgaaaagagaaaacaacaaa 39  Q
    |||| |||||||||||||||||||||||| |||||||||    
T  1008 ctctgttgtttttgaccaatgaaaagagagaacaacaaa 1046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 54632 - 54586
Alignment:
Q  4 tattgtttttgaccaatgaaaagagaaaacaacaaaattgtatcaaa 50  Q
    ||||||||||||||||| |||||||| ||||||||| |||| |||||    
T  54632 tattgtttttgaccaataaaaagagagaacaacaaagttgtctcaaa 54586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University