View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12364_low_1 (Length: 532)
Name: NF12364_low_1
Description: NF12364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12364_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 4903748 - 4904132
Alignment:
| Q |
1 |
tgttggaatggtgagtttttgaataaaaagctgcgcaggggtggtagattaatttggcatgctgcaatttggagtatttggaaagcgaggaatgacagaa |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4903748 |
tgttggaatggtgagtttttgaacaaaaagctgcgcaggggtggtagattaatttggcatgctgcaatttggagtatttggaaagcgaggaatgacagaa |
4903847 |
T |
|
| Q |
101 |
ttttcaacaatgttgtgacagatgtggaggagttgttggaatctgttaaggtgttgtcttggaggtggtttttgggtaggttgaattcatacgcgtgttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||| |
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| T |
4903848 |
ttttcaacaatgttgtgacagatgtggaggagctgttggaatctgttaaggtgttgtcttggagatggtttttgggtaggttgaattcgtacgcgttttt |
4903947 |
T |
|
| Q |
201 |
gttttatgagtggaattggaatccgaaggattgtttgttgcggtgatgctggcttctttggctgtgtggctgtttggtggccttctggttgttctgtagt |
300 |
Q |
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|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4903948 |
gttttatgagtggaattggaatctgaaggattgtttgttgcggtgatgctggcttctttggctgtgtggctgtttggtggccttctggttgttctgtagt |
4904047 |
T |
|
| Q |
301 |
cgtgtttctctggcttaacagtctgttgcggtgctggttttcggttctggtgtaggcagttagcttctaagctgcttctttagga |
385 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4904048 |
cgtgtttctctggtttaacagtctgttgcggtgctggttttcggttctggtgtaggcagttagcttctaagctgcttctttagga |
4904132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 136 - 251
Target Start/End: Original strand, 1557359 - 1557474
Alignment:
| Q |
136 |
ttggaatctgttaaggtgttgtcttggaggtggtttttgggtaggttgaattcatacgcgtgtttgttttatgagtggaattggaatccgaaggattgtt |
235 |
Q |
| |
|
|||||||| ||||||| ||||| |||||||||| ||||||||| |||| | || ||||||||||| || |||||||||||||||||| ||||| |
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| T |
1557359 |
ttggaatcaattaaggtattgtcgtggaggtggtgtttgggtagattgagcttgccagcttgtttgttttacgaatggaattggaatccgaagaattgtc |
1557458 |
T |
|
| Q |
236 |
tgttgcggtgatgctg |
251 |
Q |
| |
|
||||||| ||| |||| |
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|
| T |
1557459 |
tgttgcgttgaggctg |
1557474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 452 - 520
Target Start/End: Original strand, 4904199 - 4904267
Alignment:
| Q |
452 |
agtgcctgctcgctttttgagttgggttattaggggnnnnnnnattgagttgtgtatttgttggagcac |
520 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||| ||||||||||||| |||||||||||| |
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|
| T |
4904199 |
agtgcctgctcgttttttgagttgggttaatagggggttttttattgagttgtgtaattgttggagcac |
4904267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 112
Target Start/End: Complemental strand, 12123902 - 12123866
Alignment:
| Q |
76 |
atttggaaagcgaggaatgacagaattttcaacaatg |
112 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||| |
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|
| T |
12123902 |
atttggaaagctaggaatgacagaattttcaataatg |
12123866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 265; Significance: 1e-147; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 22153809 - 22153441
Alignment:
| Q |
1 |
tgttggaatggtgagtttttgaataaaaagctgcgcaggggtggtagattaatttggcatgctgcaatttggagtatttggaaagcgaggaatgacagaa |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
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|
| T |
22153809 |
tgttggaatggtgagtttttgaacaaaaagctgcgctggggtggtagattaatttggcatgccgcaatttggagtatttggaaagcgaggaatgacataa |
22153710 |
T |
|
| Q |
101 |
ttttcaacaatgttgtgacagatgtggaggagttgttggaatctgttaaggtgttgtcttggaggtggtttttgggtaggttgaattcatacgcgtgttt |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||| || ||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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|
| T |
22153709 |
ttttcaacaatattgtgacagatgtggagaagctgttggaatcttttaaggtgttgtcttggaggtgatttttgggtaggttgaattcgcacgcgtgttt |
22153610 |
T |
|
| Q |
201 |
gttttatgagtggaattggaatccgaaggattgtttgttgcggtgatgctggcttctttggctgtgtggctgtttggtggccttctggttgttctgtagt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||| || ||| |
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|
| T |
22153609 |
gttttatgagtggaattggaatccgaaggtttgtttgttgcggtgatgctggcttctttggttgtgcggctgtttggtcgccttctggttgttatgcagt |
22153510 |
T |
|
| Q |
301 |
cgtgtttctctggct-taacagtctgttgcggtgctggttttcggttctggtgtaggcagttagcttct |
368 |
Q |
| |
|
|| |||||||||| | ||||||||| ||| ||||||||||||| ||| ||||||| ||||||||||||| |
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|
| T |
22153509 |
cgcgtttctctggttataacagtctattgtggtgctggttttcagttatggtgtatgcagttagcttct |
22153441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 22209724 - 22209356
Alignment:
| Q |
1 |
tgttggaatggtgagtttttgaataaaaagctgcgcaggggtggtagattaatttggcatgctgcaatttggagtatttggaaagcgaggaatgacagaa |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
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|
| T |
22209724 |
tgttggaatggtgagtttttgaacaaaaagctgcgctggggtggtagattaatttggcatgccgcaatttggagtatttggaaagcgaggaatgacataa |
22209625 |
T |
|
| Q |
101 |
ttttcaacaatgttgtgacagatgtggaggagttgttggaatctgttaaggtgttgtcttggaggtggtttttgggtaggttgaattcatacgcgtgttt |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||| || ||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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|
| T |
22209624 |
ttttcaacaatattgtgacagatgtggagaagctgttggaatcttttaaggtgttgtcttggaggtgatttttgggtaggttgaattcgcacgcgtgttt |
22209525 |
T |
|
| Q |
201 |
gttttatgagtggaattggaatccgaaggattgtttgttgcggtgatgctggcttctttggctgtgtggctgtttggtggccttctggttgttctgtagt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||| || ||| |
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|
| T |
22209524 |
gttttatgagtggaattggaatccgaaggtttgtttgttgcggtgatgctggcttctttggttgtgcggctgtttggtcgccttctggttgttatgcagt |
22209425 |
T |
|
| Q |
301 |
cgtgtttctctggct-taacagtctgttgcggtgctggttttcggttctggtgtaggcagttagcttct |
368 |
Q |
| |
|
|| |||||||||| | ||||||||| ||| ||||||||||||| ||| ||||||| ||||||||||||| |
|
|
| T |
22209424 |
cgcgtttctctggttataacagtctattgtggtgctggttttcagttatggtgtatgcagttagcttct |
22209356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 38185318 - 38185265
Alignment:
| Q |
196 |
tgtttgttttatgagtggaattggaatccgaaggattgtttgttgcggtgatgc |
249 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| || ||||||||||||||| |
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|
| T |
38185318 |
tgtttgttttacgagtggaattggaatccgaaggaatgcttgttgcggtgatgc |
38185265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 52 - 246
Target Start/End: Original strand, 53562243 - 53562433
Alignment:
| Q |
52 |
atttggcatgctgcaatttggagtatttggaaagcgaggaatgacagaattttcaacaatgttgtgacagatgtggaggagttgttggaatctgttaagg |
151 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| |||| ||| | || || ||||| ||||| | || |||| |
|
|
| T |
53562243 |
atttggcatgctgttatttggagtatatggaaagcgaggaacgacagaattttcaataatgctgttattgaggttgaggatctgttg----cagtcaagg |
53562338 |
T |
|
| Q |
152 |
tgttgtcttggaggtggtttttgggtaggttgaattcatacgcgtgtttgttttatgagtggaattggaatccgaaggattgtttgttgcggtga |
246 |
Q |
| |
|
| ||||||||||||||| |||||| || || || | |||| |||||| || |||||||| |||||||| ||||| |||||| |||||||| |
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|
| T |
53562339 |
ttttgtcttggaggtggagtttgggaagattaaagttgccggcgtttttgttctacgagtggaagtggaatcccaaggactgtttgatgcggtga |
53562433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 180
Target Start/End: Complemental strand, 43073787 - 43073753
Alignment:
| Q |
146 |
ttaaggtgttgtcttggaggtggtttttgggtagg |
180 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |
|
|
| T |
43073787 |
ttaaggtgttgtcttggaggtggttgttgggtagg |
43073753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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