View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12365_high_1 (Length: 336)
Name: NF12365_high_1
Description: NF12365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12365_high_1 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 19 - 334
Target Start/End: Complemental strand, 27173495 - 27173180
Alignment:
| Q |
19 |
acttgtgaattattattctgcttgttttaaagtgtgtttgaagacttttataagtataagtatgtgtgtgttgaaaccatgatttgtctcgggacaacta |
118 |
Q |
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| T |
27173495 |
acttgtgaattattattgtgcttgttttaaagtgtgtttgaagacttttataagtataagtatgtgtgtgttgaaaccatgatttgtctcgggacaacta |
27173396 |
T |
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| Q |
119 |
cttttaatgcggttgatcttctcacatctttactcgtaaaggtaagagttagacgtattggtggttaaaatcgtgttacgtttagtttaattttgattac |
218 |
Q |
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| T |
27173395 |
cttttaatgcggttgatcttctcacatctttactcgtaaaggtaagagttagacgtattggtggttaaaatcgtgttacgttttgtttaattttgattac |
27173296 |
T |
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| Q |
219 |
cacacttgaaggttgaatcctttgatgtgtttaaatgcagtttcctaagtttttcttctattgctgcgtttgcagtgannnnnnngtataacatactttg |
318 |
Q |
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| T |
27173295 |
cacacttgaagattgaatcctttgatgtgtttaaatgcagtttcctaagtttttcttctattgctgcgtttgcagtgatttttttgtgtaacatactttg |
27173196 |
T |
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| Q |
319 |
actctctgcttctcca |
334 |
Q |
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| T |
27173195 |
actctttgtttctcca |
27173180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 272
Target Start/End: Complemental strand, 29669170 - 29669120
Alignment:
| Q |
222 |
acttgaaggttgaatcctttgatgtgtttaaatgcagtttcctaagttttt |
272 |
Q |
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| T |
29669170 |
acttggaggctgaatcctttgatgtgtttaaatgcagttttttaagttttt |
29669120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 286
Target Start/End: Complemental strand, 23062645 - 23062489
Alignment:
| Q |
131 |
ttgatcttctcacatctttactcgtaaaggt-aagagttagacgtattggtggttaaaatcgtgttacgtttagtttaattttgattaccacacttgaag |
229 |
Q |
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| T |
23062645 |
ttgatcttctcacatctttattcgaaaaggtcaagagtcatttgtattgatggttaaaagtgtgttatgtattgcttgattttgattaccttacttggag |
23062546 |
T |
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| Q |
230 |
gttgaatcctttgatgtgtttaaatgcagtttcctaagtttttcttctattgctgcg |
286 |
Q |
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| T |
23062545 |
gttgaatcctttggtgtgattaaagacactttcctatgttttttttctgttgttgcg |
23062489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 180 - 253
Target Start/End: Original strand, 45916295 - 45916368
Alignment:
| Q |
180 |
tggttaaaatcgtgttacgtttagtttaattttgattaccacacttgaaggttgaatcctttgatgtgtttaaa |
253 |
Q |
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| T |
45916295 |
tggtaaaaatcgtgttatgttttgtttaattttgattaccaaactttgaggcagaatcctttgatgtgtttaaa |
45916368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 180 - 272
Target Start/End: Complemental strand, 10258581 - 10258489
Alignment:
| Q |
180 |
tggttaaaatcgtgttacgtttagtttaattttgattaccacacttgaaggttgaatcctttgatgtgtttaaatgcagtttcctaagttttt |
272 |
Q |
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| T |
10258581 |
tggttaaaagcgtgctatgttatgtttgattttgattaccttatttggaggttgaatcatttgatatgtttaaaggcaatttcctaagttttt |
10258489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 271
Target Start/End: Complemental strand, 56660 - 56611
Alignment:
| Q |
222 |
acttgaaggttgaatcctttgatgtgtttaaatgcagtttcctaagtttt |
271 |
Q |
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| T |
56660 |
acttgaaagttgaaccctttgatgtgtttaaagaccgtttcctaagtttt |
56611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 253
Target Start/End: Original strand, 30188654 - 30188738
Alignment:
| Q |
169 |
agacgtattggtggttaaaatcgtgttacgtttagtttaattttgattaccacacttgaaggttgaatcctttgatgtgtttaaa |
253 |
Q |
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| T |
30188654 |
agacatattggtggttaaaatctttttatgatttgttttattttgattagataacttggaggttaaatcctttgatgtgtataaa |
30188738 |
T |
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