View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12365_low_1 (Length: 1021)

Name: NF12365_low_1
Description: NF12365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12365_low_1
NF12365_low_1
[»] chr7 (4 HSPs)
chr7 (598-1007)||(34838479-34838883)
chr7 (60-523)||(34838958-34839421)
chr7 (472-509)||(20388453-20388490)
chr7 (459-504)||(37952732-37952777)
[»] scaffold0105 (1 HSPs)
scaffold0105 (435-505)||(17751-17821)
[»] chr4 (3 HSPs)
chr4 (435-505)||(8191176-8191246)
chr4 (435-500)||(29420330-29420395)
chr4 (467-508)||(54208578-54208619)
[»] chr3 (6 HSPs)
chr3 (415-504)||(53632626-53632715)
chr3 (459-508)||(53632568-53632617)
chr3 (428-512)||(45313643-45313727)
chr3 (473-508)||(32637132-32637167)
chr3 (439-500)||(53719118-53719180)
chr3 (473-506)||(32635673-32635706)
[»] chr1 (2 HSPs)
chr1 (435-501)||(33067523-33067589)
chr1 (472-505)||(18302273-18302306)
[»] chr5 (4 HSPs)
chr5 (435-512)||(22551097-22551174)
chr5 (435-500)||(17070678-17070744)
chr5 (466-512)||(20416500-20416546)
chr5 (472-509)||(26133299-26133336)
[»] chr8 (1 HSPs)
chr8 (459-508)||(32195530-32195579)
[»] chr6 (1 HSPs)
chr6 (467-508)||(6468426-6468467)


Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 598 - 1007
Target Start/End: Complemental strand, 34838883 - 34838479
Alignment:
Q  598 cataaactaaaaccaaaaataaacatatttacaaggatgaaaacaatattttaacctaatttttattgaagagatgagatgagaggatgtacgaaaaaga 697  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||     ||||||||||||||||    
T  34838883 cataaactaaaaccaaaaataaacatatttacaaggatgaaaacaatattttagcctaatttttattgaagagatgaga-----ggatgtacgaaaaaga 34838789  T
Q  698 agatcatgaagaatcagaatgttttggacgtggtaactgcttgagttgtaaagtctatgtcagggacacaagacatgtgattcctttcccagttttcttc 797  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34838788 agatcatgaagaatcagaatgttttggacgtggtaactgcttgagttgtaaagtctatgtcagggacacaagacatgtgattcctttcccagttttcttc 34838689  T
Q  798 tttgtttttaaagctagcgatgcattataaatgatcatcatcaaaatactctctcctatctcatttataaacaacatttcattttggtgtttattttgta 897  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  34838688 tttgtttttaaagctagcgatgcattataaatgatcatcatcaaaatactctctcctatctcatttataaacaacatttcattttggtgtttgttttgta 34838589  T
Q  898 aaacataaaactgagtttatggtttatagcttgtatgattaaaatagatttgtgtggttgtcatttttacaaaagcttatatcttatttttataagttta 997  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34838588 aaacataaaactgagtttatggtttatagcttgtatgattaaaatagatttgtgtggttgtcatttttacaaaagcttatatcttatttttataagttta 34838489  T
Q  998 tgaaggtttt 1007  Q
    ||| ||||||    
T  34838488 tgacggtttt 34838479  T

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Target: chr7; HSP #2
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 60 - 523
Target Start/End: Complemental strand, 34839421 - 34838958
Alignment:
Q  60 tgacgagttaggatgggaaaatggttgagcgggatttttatagcgagatagagtgaaagtgtggacaaatatattggttccctcgctttgtaatgagaag 159  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34839421 tgacgagttaggatgggaaaatggttgagcgggatttttatagcgagatagagtgaaagtgtggacaaatatattggttccctcgctttgtaatgagaag 34839322  T
Q  160 tgatgtggatggttggatggaaacctttggacggtgtagattgaagatttgattatttaaattttgatttgggttttgtctgttattgaagcaaagaaat 259  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34839321 tgatgtggatcgttggatggaaacctttggacggtgtagattgaagatttgattatttaaattttgatttgggttttgtctgttattgaagcaaagaaat 34839222  T
Q  260 tatgatgggacagatatgcccttgtgttgaatgacggaatggtcctacttcggtagattaatttttaggtaaatattttggttttaattcatgtatattt 359  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34839221 tatgatgggacagatatgcccttgtgttgaatgacgaaatggtcctatttcggtagattaatttttaggtaaatattttggttttaattcatgtatattt 34839122  T
Q  360 ctacaaaatgcaaannnnnnnnnnnnnnnnnnnnnnggccctacttttgtgacgatttgtcacctttgtgtatatgtggtacatgatgactgtatccata 459  Q
    ||||||||||||||                      ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||     
T  34839121 ctacaaaatgcaaatttttttgtttttttagtttttggccctacttttgtgacgatttgtcgcatttgtgtatatgtggtacatgatgactgtatccatt 34839022  T
Q  460 ttgtaggaaaaagtccttgcaaaatatattgttttttaaaatagtccctacaatgagacaccat 523  Q
     ||||||||||| |||||| ||||||| ||||||||||||||||||||| |||||| |||||||    
T  34839021 ctgtaggaaaaaatccttgtaaaatattttgttttttaaaatagtccctgcaatgaaacaccat 34838958  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 472 - 509
Target Start/End: Original strand, 20388453 - 20388490
Alignment:
Q  472 gtccttgcaaaatatattgttttttaaaatagtcccta 509  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  20388453 gtccttgcaaaatattttgttttttaaaatggtcccta 20388490  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 459 - 504
Target Start/End: Original strand, 37952732 - 37952777
Alignment:
Q  459 attgtaggaaaaagtccttgcaaaatatattgttttttaaaatagt 504  Q
    ||||||| |||| |||| |||||||||| |||||||||||||||||    
T  37952732 attgtagaaaaaggtccctgcaaaatattttgttttttaaaatagt 37952777  T

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Target: scaffold0105 (Bit Score: 47; Significance: 3e-17; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 435 - 505
Target Start/End: Complemental strand, 17821 - 17751
Alignment:
Q  435 gtggtacatgatgactgtatccatattgtaggaaaaagtccttgcaaaatatattgttttttaaaatagtc 505  Q
    |||||||||| |||||| |  ||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  17821 gtggtacatggtgactgaactcattttgtagaaaaaagtccttgcaaaatatattgttttttaaaatagtc 17751  T

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Target: chr4 (Bit Score: 47; Significance: 3e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 435 - 505
Target Start/End: Complemental strand, 8191246 - 8191176
Alignment:
Q  435 gtggtacatgatgactgtatccatattgtaggaaaaagtccttgcaaaatatattgttttttaaaatagtc 505  Q
    |||||||||| |||||| |  ||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  8191246 gtggtacatggtgactgaactcattttgtagaaaaaagtccttgcaaaatatattgttttttaaaatagtc 8191176  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 435 - 500
Target Start/End: Complemental strand, 29420395 - 29420330
Alignment:
Q  435 gtggtacatgatgactgtatccatattgtaggaaaaagtccttgcaaaatatattgttttttaaaa 500  Q
    |||| ||||||||| || | |||| ||||||||||| ||||||||||||||| |||||||||||||    
T  29420395 gtggcacatgatgattgaacccattttgtaggaaaaggtccttgcaaaatattttgttttttaaaa 29420330  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 467 - 508
Target Start/End: Complemental strand, 54208619 - 54208578
Alignment:
Q  467 aaaaagtccttgcaaaatatattgttttttaaaatagtccct 508  Q
    |||| ||||||||||||||| |||||||| ||||||||||||    
T  54208619 aaaaggtccttgcaaaatattttgtttttgaaaatagtccct 54208578  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 415 - 504
Target Start/End: Original strand, 53632626 - 53632715
Alignment:
Q  415 tttgtcacctttgtgtatatgtggtacatgatgactgtatccatattgtaggaaaaagtccttgcaaaatatattgttttttaaaatagt 504  Q
    ||||||||||||| | ||| |||| ||||||||| |||   ||| |||||| ||||||||  |||||||||| |||||||||||||||||    
T  53632626 tttgtcacctttgcgcatacgtggcacatgatgattgtgctcattttgtagaaaaaagtcactgcaaaatattttgttttttaaaatagt 53632715  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 459 - 508
Target Start/End: Original strand, 53632568 - 53632617
Alignment:
Q  459 attgtaggaaaaagtccttgcaaaatatattgttttttaaaatagtccct 508  Q
    ||||||| ||||||||| |||||||||| |||||||||||| ||||||||    
T  53632568 attgtagaaaaaagtccctgcaaaatattttgttttttaaagtagtccct 53632617  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 428 - 512
Target Start/End: Complemental strand, 45313727 - 45313643
Alignment:
Q  428 tgtatatgtggtacatgatgactgtatccatattgtaggaaaaagtccttgcaaaatatattgttttttaaaatagtccctacaa 512  Q
    |||||||||||  ||||||||||| | |||| |||||| ||||||||| | |||| ||| ||||||||  || ||||||||||||    
T  45313727 tgtatatgtggcgcatgatgactgaacccattttgtagaaaaaagtccatacaaattattttgtttttggaagtagtccctacaa 45313643  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 473 - 508
Target Start/End: Complemental strand, 32637167 - 32637132
Alignment:
Q  473 tccttgcaaaatatattgttttttaaaatagtccct 508  Q
    |||||||||||||| |||||||||||||||||||||    
T  32637167 tccttgcaaaatattttgttttttaaaatagtccct 32637132  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 439 - 500
Target Start/End: Complemental strand, 53719180 - 53719118
Alignment:
Q  439 tacatgatgactgtatccatattgtaggaaaa-agtccttgcaaaatatattgttttttaaaa 500  Q
    ||||||||||||| |||||| |||||| |||| ||||| |||||||||| ||| |||||||||    
T  53719180 tacatgatgactgaatccattttgtagaaaaatagtccctgcaaaatattttgatttttaaaa 53719118  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 473 - 506
Target Start/End: Original strand, 32635673 - 32635706
Alignment:
Q  473 tccttgcaaaatatattgttttttaaaatagtcc 506  Q
    |||||||||||||| |||||||||||||||||||    
T  32635673 tccttgcaaaatattttgttttttaaaatagtcc 32635706  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 435 - 501
Target Start/End: Complemental strand, 33067589 - 33067523
Alignment:
Q  435 gtggtacatgatgactgtatccatattgtaggaaaaagtccttgcaaaatatattgttttttaaaat 501  Q
    |||| |||||||||||| | |||| |||||| ||||||||| | |||||||| ||||||||||||||    
T  33067589 gtggcacatgatgactgaacccattttgtagaaaaaagtccctacaaaatattttgttttttaaaat 33067523  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 472 - 505
Target Start/End: Complemental strand, 18302306 - 18302273
Alignment:
Q  472 gtccttgcaaaatatattgttttttaaaatagtc 505  Q
    ||||||||||||||| ||||||||||||||||||    
T  18302306 gtccttgcaaaatattttgttttttaaaatagtc 18302273  T

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Target: chr5 (Bit Score: 34; Significance: 0.000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 435 - 512
Target Start/End: Complemental strand, 22551174 - 22551097
Alignment:
Q  435 gtggtacatgatgactgtatccatattgtaggaaaaagtccttgcaaaatatattgttttttaaaatagtccctacaa 512  Q
    ||||||||||||||||| |  ||| |||||| ||||||| | |||||||||| ||| ||||||||| | |||||||||    
T  22551174 gtggtacatgatgactgaactcattttgtagaaaaaagttcctgcaaaatattttgatttttaaaaaaatccctacaa 22551097  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 435 - 500
Target Start/End: Original strand, 17070678 - 17070744
Alignment:
Q  435 gtggtacatgatgactgtatccatattgtaggaaaa-agtccttgcaaaatatattgttttttaaaa 500  Q
    |||| ||||||||| || |||||| |||||| |||| |||||||||||||||| ||| |||||||||    
T  17070678 gtggcacatgatgaatgaatccattttgtagaaaaatagtccttgcaaaatattttgatttttaaaa 17070744  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 466 - 512
Target Start/End: Complemental strand, 20416546 - 20416500
Alignment:
Q  466 gaaaaagtccttgcaaaatatattgttttttaaaatagtccctacaa 512  Q
    |||||||| | |||||||||| ||| |||||||||||||||||||||    
T  20416546 gaaaaagtacctgcaaaatattttggtttttaaaatagtccctacaa 20416500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 472 - 509
Target Start/End: Complemental strand, 26133336 - 26133299
Alignment:
Q  472 gtccttgcaaaatatattgttttttaaaatagtcccta 509  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  26133336 gtccttgcaaaattttttgttttttaaaatagtcccta 26133299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 459 - 508
Target Start/End: Complemental strand, 32195579 - 32195530
Alignment:
Q  459 attgtaggaaaaagtccttgcaaaatatattgttttttaaaatagtccct 508  Q
    |||||||||||| || | |||||||||| |||||||| ||||||||||||    
T  32195579 attgtaggaaaaggttcctgcaaaatattttgtttttgaaaatagtccct 32195530  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 467 - 508
Target Start/End: Complemental strand, 6468467 - 6468426
Alignment:
Q  467 aaaaagtccttgcaaaatatattgttttttaaaatagtccct 508  Q
    |||| |||| |||||||||| |||||||||||||||||||||    
T  6468467 aaaaggtccctgcaaaatattttgttttttaaaatagtccct 6468426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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