View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12365_low_2 (Length: 536)
Name: NF12365_low_2
Description: NF12365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12365_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 2e-99; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 339 - 526
Target Start/End: Original strand, 23144875 - 23145062
Alignment:
| Q |
339 |
ggaagtgtatctagtgttgagtgaactggagttagatgttgtggaatcggctaagaatgtttgaaatccattaatccctcagaaggtatcggtgttaatt |
438 |
Q |
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| T |
23144875 |
ggaagtgtatctagtgttgagtgaactggagttagatgttgtggaatcggctaagaatgtttgaaatccattaatccctcagaaggtatcggtgttgatt |
23144974 |
T |
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| Q |
439 |
gggaggcttttgcaaaataggcttcccactaaagataatctttgtttgaaagggataagagataatgcatctacttcttgtgtctgtg |
526 |
Q |
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| T |
23144975 |
gggaggcttttgcaaaataggcttcccactaaagataatctttgtttgaaagggataagagataatgcatctacttcttgtgtctgtg |
23145062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 23144523 - 23144696
Alignment:
| Q |
17 |
aatttttaatcgcccccacaacacatcgccctttaattccagttttctgatctttacaatcccctgaaagtgtaatcgacaagaaatttaatcttgcaaa |
116 |
Q |
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| T |
23144523 |
aatttgtaatagcccccacaacacatcgccccttaattccagttttctgatctttacaatcccctgaaagttaaatcgacaagaagtttaatcttgcaaa |
23144622 |
T |
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| Q |
117 |
gcatattattcacaaggagaactaagctagtgacatctttaactcatggttcaattagttcaatgaatttgacta |
191 |
Q |
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| T |
23144623 |
gcatattattaataaggag-attagactagtggcatcttcgactcatggttcgattagttcagtgaattttacta |
23144696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 271 - 345
Target Start/End: Original strand, 23144774 - 23144848
Alignment:
| Q |
271 |
ctgttgaatgaactatggttgaactcattaaaccttgatttaatctagttaaggaggcgttgatcgttggaagtg |
345 |
Q |
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| T |
23144774 |
ctgttgaatgaactatggttgaactcattaaaccttgatttaatctagttaaggaggcgttgatcgttggaagtg |
23144848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 23135419 - 23135471
Alignment:
| Q |
32 |
ccacaacacatcgccctttaattccagttttctgatctttacaatcccctgaa |
84 |
Q |
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| T |
23135419 |
ccacgacacatcgcccctttgttccagttttatgatctatacaatcccctgaa |
23135471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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