View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12365_low_4 (Length: 299)
Name: NF12365_low_4
Description: NF12365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12365_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 11 - 141
Target Start/End: Complemental strand, 50632659 - 50632529
Alignment:
| Q |
11 |
cagaacctgtgtggtcaacaataaacaagctatccgtgacatgaaagggggtttaaccttaaaatcactatgtcgactcaaagcccatggttacaaaaag |
110 |
Q |
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| T |
50632659 |
cagaaactgtgtggtcaacaataaacaagctatccgtgacatgaaagggggtttaaccttaaaatcactatgtcgactcaaagcccatggttacaaaaag |
50632560 |
T |
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| Q |
111 |
caacaaacaacttacatgtgacaacaataat |
141 |
Q |
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| T |
50632559 |
caacaaacaacttacatgtgacaacaataat |
50632529 |
T |
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Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 216 - 276
Target Start/End: Complemental strand, 50632421 - 50632361
Alignment:
| Q |
216 |
tagctcaccgaccaaactaccttaaatagcagccaagtgaaaacattggtcattcattcat |
276 |
Q |
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| T |
50632421 |
tagctcaccgaccaaactaccttaaatagcagccaagtgaaaacattggtcattcattcat |
50632361 |
T |
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