View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12366_high_1 (Length: 484)

Name: NF12366_high_1
Description: NF12366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12366_high_1
NF12366_high_1
[»] chr1 (2 HSPs)
chr1 (31-484)||(48768169-48768627)
chr1 (295-371)||(19940616-19940692)
[»] chr3 (1 HSPs)
chr3 (295-371)||(29247295-29247371)
[»] chr8 (2 HSPs)
chr8 (296-346)||(9799269-9799319)
chr8 (295-371)||(15111889-15111965)
[»] chr4 (2 HSPs)
chr4 (295-369)||(38509913-38509987)
chr4 (295-371)||(27756453-27756529)
[»] chr2 (3 HSPs)
chr2 (69-99)||(602135-602165)
chr2 (296-346)||(3037421-3037471)
chr2 (295-369)||(6983197-6983271)


Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 31 - 484
Target Start/End: Complemental strand, 48768627 - 48768169
Alignment:
Q  31 aattagaaatatttttt-atcatgattaaaatataatcattttttgtcaagtagtttaatggttaaaatttacatttaaaataaacaacttgagtgttca 129  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||      
T  48768627 aattagaaatatttttttatcatgattaaaatataatctttttttgtcaagtagtttaatatttaaaatttacatttaaaataaacaacttgagtgtttg 48768528  T
Q  130 aagttcgaacttggtgggtagatattactatacattgtttagggggcataatagaatcatctttagtcattatttttcttcatatcttattatttaggta 229  Q
    |||||||||||||     || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48768527 aagttcgaacttgacctctacatattactatacattgtttagggggcagaatagaatcatctttagtcattatttttcttcatatcttattatttaggta 48768428  T
Q  230 tcgaatttttctatgtaatgacgctatttattttcataagtacactccttttcctaaacatgcatataacactttttatacttttaacgagttgacaaca 329  Q
    ||||  |||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||    
T  48768427 tcgacattttttatgtaatgacgctatttattttcataagtacactccttttcttaaacatacatataacactttttatacttttaaagagttgacaaca 48768328  T
Q  330 taagctccaatataatatctactatatttgattctttaaccaatgtttcaggggcaccgattaac---annnnnnnnnncctttcaaaagc-aaataaca 425  Q
     ||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||              |||||||||||| ||||||||    
T  48768327 caagttccaatataatatctactatatttgattctttaaccaatgtttcagagacaccgattaacttttttttttttttcctttcaaaagcaaaataaca 48768228  T
Q  426 tttcattgatagacttaatacccacaagcagaagatgtgcattcatgagagtatacaat 484  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48768227 tttcattgatagacttaatacccacaagcagaagatgtgcattcatgagagtatacaat 48768169  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 295 - 371
Target Start/End: Original strand, 19940616 - 19940692
Alignment:
Q  295 ataacactttttatacttttaacgagttgacaacataagctccaatataatatctactatatttgattctttaacca 371  Q
    |||||||||||||| ||||| | ||||||||| |||||| | ||||  ||||  ||||| ||||||||| |||||||    
T  19940616 ataacactttttatgcttttgaggagttgacagcataagtttcaatgcaatacttactacatttgattccttaacca 19940692  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 295 - 371
Target Start/End: Complemental strand, 29247371 - 29247295
Alignment:
Q  295 ataacactttttatacttttaacgagttgacaacataagctccaatataatatctactatatttgattctttaacca 371  Q
    |||||||||||||||||||| | ||||||| |||| ||| |||||| |||||| | ||| |||| |||| |||||||    
T  29247371 ataacactttttatacttttgaggagttgataacacaagttccaatgtaatattttctacatttaattccttaacca 29247295  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 346
Target Start/End: Original strand, 9799269 - 9799319
Alignment:
Q  296 taacactttttatacttttaacgagttgacaacataagctccaatataata 346  Q
    ||||||||||||||||||| | |||||||||||| ||| |||||| |||||    
T  9799269 taacactttttatacttttcaagagttgacaacacaagttccaatgtaata 9799319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 295 - 371
Target Start/End: Original strand, 15111889 - 15111965
Alignment:
Q  295 ataacactttttatacttttaacgagttgacaacataagctccaatataatatctactatatttgattctttaacca 371  Q
    ||||||||||||||| |||| | |||||||||||| ||| |  ||||||| |  ||||| ||||||||| |||||||    
T  15111889 ataacactttttatattttttaggagttgacaacacaagttttaatataaaacttactagatttgattccttaacca 15111965  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 369
Target Start/End: Complemental strand, 38509987 - 38509913
Alignment:
Q  295 ataacactttttatacttttaacgagttgacaacataagctccaatataatatctactatatttgattctttaac 369  Q
    ||||||||||| |||||||| | |||||||||||| ||| ||||||  ||||| || || ||||||||| |||||    
T  38509987 ataacacttttcatacttttgaggagttgacaacacaagttccaatgcaatatttattacatttgattccttaac 38509913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 295 - 371
Target Start/End: Complemental strand, 27756529 - 27756453
Alignment:
Q  295 ataacactttttatacttttaacgagttgacaacataagctccaatataatatctactatatttgattctttaacca 371  Q
    |||||||||||||| ||||| | |||||||||||| ||  | |||| |||||  ||||| ||||||||| |||||||    
T  27756529 ataacactttttatgcttttgaagagttgacaacacaaatttcaatgtaatacttactacatttgattccttaacca 27756453  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 99
Target Start/End: Original strand, 602135 - 602165
Alignment:
Q  69 ttttttgtcaagtagtttaatggttaaaatt 99  Q
    |||||||||||||||||||||||||||||||    
T  602135 ttttttgtcaagtagtttaatggttaaaatt 602165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 346
Target Start/End: Complemental strand, 3037471 - 3037421
Alignment:
Q  296 taacactttttatacttttaacgagttgacaacataagctccaatataata 346  Q
    ||||||||||||||||||||| |||||||||||| ||  |||||| |||||    
T  3037471 taacactttttatacttttaaggagttgacaacacaaattccaatgtaata 3037421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 369
Target Start/End: Original strand, 6983197 - 6983271
Alignment:
Q  295 ataacactttttatacttttaacgagttgacaacataagctccaatataatatctactatatttgattctttaac 369  Q
    |||||||||||||| ||||| | ||||||||| || ||| |||||| |||||  | ||||||||||||| |||||    
T  6983197 ataacactttttatgctttttaggagttgacaccacaagttccaatgtaatactttctatatttgattccttaac 6983271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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