View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12366_high_3 (Length: 314)

Name: NF12366_high_3
Description: NF12366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12366_high_3
NF12366_high_3
[»] chr3 (1 HSPs)
chr3 (74-310)||(8523042-8523278)
[»] chr5 (9 HSPs)
chr5 (90-314)||(42128835-42129059)
chr5 (90-289)||(42117714-42117913)
chr5 (101-307)||(34240469-34240675)
chr5 (112-310)||(34232723-34232924)
chr5 (101-310)||(42123461-42123670)
chr5 (99-180)||(41713612-41713693)
chr5 (135-210)||(41572040-41572115)
chr5 (135-210)||(41617679-41617754)
chr5 (233-298)||(41444445-41444510)
[»] chr2 (3 HSPs)
chr2 (94-310)||(12248416-12248632)
chr2 (79-310)||(11994297-11994528)
chr2 (101-310)||(32681834-32682043)
[»] chr4 (1 HSPs)
chr4 (101-310)||(11118106-11118315)
[»] chr6 (2 HSPs)
chr6 (101-310)||(25522952-25523161)
chr6 (230-310)||(24140921-24141001)


Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 74 - 310
Target Start/End: Original strand, 8523042 - 8523278
Alignment:
Q  74 tattctattccacatatattccaactcagtaacattcatcatggcttcaaactttttgaaataggcttttggtagaggaccactaaagttattgcttgag 173  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  8523042 tattctattcctcatgtattccaactcagtaacattcatcatggcttcaaactttttgaaataggattttggtagaggaccactaaagttattgtttgag 8523141  T
Q  174 atatcaaaaatagttaaatctggaaatggatgcttgagctttggattaacaatgataccatgcaacttattgtctcgcaaaagcaacactttcaaatatt 273  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  8523142 atatcaaaaatagttaaatctggaaatggatgcttgatctttggattaacaatgataccatgcaacttattgtctcgcaaaagcaacactttcaaataat 8523241  T
Q  274 gcaaggtttgaagccaatgaggaaaattgtcttctat 310  Q
    |||  |||| |||||||||||||||||||||||||||    
T  8523242 gcagtgtttcaagccaatgaggaaaattgtcttctat 8523278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 149; Significance: 1e-78; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 90 - 314
Target Start/End: Original strand, 42128835 - 42129059
Alignment:
Q  90 tattccaactcagtaacattcatcatggcttcaaactttttgaaataggcttttggtagaggaccactaaagttattgcttgagatatcaaaaatagtta 189  Q
    |||||||| | |||||||||| ||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||| |||||||||||||||| |||    
T  42128835 tattccaattgagtaacattcttcatggcttcaaactttttaaaataggcttttggtagcggaccgctaaagttattgcctgagatatcaaaaataatta 42128934  T
Q  190 aatctggaaatggatgcttgagctttggattaacaatgataccatgcaacttattgtctcgcaaaagcaacactttcaaatattgcaaggtttgaagcca 289  Q
    ||  ||||||||||||||||| |||| ||||| ||||||||||||||||||| |||||| |||||| ||||||||||||||||||||  |||||||||||    
T  42128935 aacttggaaatggatgcttgatctttagattagcaatgataccatgcaacttgttgtcttgcaaaaccaacactttcaaatattgcagtgtttgaagcca 42129034  T
Q  290 atgaggaaaattgtcttctatgttg 314  Q
    || ||||||||||||||||||||||    
T  42129035 atcaggaaaattgtcttctatgttg 42129059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 90 - 289
Target Start/End: Original strand, 42117714 - 42117913
Alignment:
Q  90 tattccaactcagtaacattcatcatggcttcaaactttttgaaataggcttttggtagaggaccactaaagttattgcttgagatatcaaaaatagtta 189  Q
    |||||||| |||||||| ||| ||||||||||||| ||||| ||| | ||||||||||| ||||  ||||||||||| | |||||||| ||||||| |||    
T  42117714 tattccaattcagtaactttcttcatggcttcaaatttttttaaaaatgcttttggtagcggacagctaaagttatttcctgagatataaaaaataatta 42117813  T
Q  190 aatctggaaatggatgcttgagctttggattaacaatgataccatgcaacttattgtctcgcaaaagcaacactttcaaatattgcaaggtttgaagcca 289  Q
    ||  ||||||||||||||||| ||||||||||  ||||||||||||||||||||||||| | |||| |||||||| ||||||||| |  |||||||||||    
T  42117814 aacttggaaatggatgcttgatctttggattaggaatgataccatgcaacttattgtcttgtaaaaccaacacttgcaaatattgtagtgtttgaagcca 42117913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 101 - 307
Target Start/End: Complemental strand, 34240675 - 34240469
Alignment:
Q  101 agtaacattcatcatggcttcaaactttttgaaataggcttttggtagaggaccactaaagttattgcttgagatatcaaaaatagttaaatctggaaat 200  Q
    |||||| ||| ||||||||||||| | ||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||  ||||   ||||||    
T  34240675 agtaactttcttcatggcttcaaaatattttaaataggcttttggtagcggaccagtaaagttattgcttgagatatcaaaaataactaaactaggaaat 34240576  T
Q  201 ggatgcttgagctttggattaacaatgataccatgcaacttattgtctcgcaaaagcaacactttcaaatattgcaaggtttgaagccaatgaggaaaat 300  Q
    |||||| ||| ||||  |||  |||||  |||||||||||||||||||||||||| || ||||||||| ||||| |  |||||||||||   |||||| |    
T  34240575 ggatgcctgatctttaaattggcaatgtgaccatgcaacttattgtctcgcaaaaccagcactttcaagtattggagagtttgaagccagacaggaaatt 34240476  T
Q  301 tgtcttc 307  Q
    |||||||    
T  34240475 tgtcttc 34240469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 112 - 310
Target Start/End: Complemental strand, 34232924 - 34232723
Alignment:
Q  112 tcatggcttcaaactttttgaaataggcttt---tggtagaggaccactaaagttattgcttgagatatcaaaaatagttaaatctggaaatggatgctt 208  Q
    ||||||||||| |||||||||||||| ||||   |||||| ||||||||||||||||| |  |||||||||||||||  ||||   |||||||||| |||    
T  34232924 tcatggcttcatactttttgaaatagtctttcggtggtagcggaccactaaagttatttcccgagatatcaaaaataactaaactgggaaatggattctt 34232825  T
Q  209 gagctttggattaacaatgataccatgcaacttattgtctcgcaaaagcaacactttcaaatattgcaaggtttgaagccaatgaggaaaattgtcttct 308  Q
    || ||||  |||  |||||  ||||||||||||||| ||||| ||||  | ||||||||||| |||||| ||||||| ||| | |||||| |||||||||    
T  34232824 gatctttaaattggcaatgtgaccatgcaacttattatctcgtaaaactagcactttcaaatcttgcaaagtttgaatccagtcaggaaatttgtcttct 34232725  T
Q  309 at 310  Q
    ||    
T  34232724 at 34232723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 101 - 310
Target Start/End: Original strand, 42123461 - 42123670
Alignment:
Q  101 agtaacattcatcatggcttcaaactttttgaaataggcttttggtagaggaccactaaagttattgcttgagatatcaaaaatagttaaatctggaaat 200  Q
    |||| ||||| ||||||||||| | |||||  |||||||||||||||||  ||||| ||||||||| |  ||||||||||||||  ||||   |||||||    
T  42123461 agtatcattcttcatggcttcataattttttgaataggcttttggtagaaaaccaccaaagttatttccagagatatcaaaaatgattaagcttggaaat 42123560  T
Q  201 ggatgcttgagctttggattaacaatgataccatgcaacttattgtctcgcaaaagcaacactttcaaatattgcaaggtttgaagccaatgaggaaaat 300  Q
     || |||  | ||||  |||  | |||  |||||| ||||||||||||||||||| ||  |||||||||| ||| |  ||||||| ||||| ||||||||    
T  42123561 agacgctcaatctttaaattggcgatgggaccatgaaacttattgtctcgcaaaaccagtactttcaaatcttgaagtgtttgaaaccaatcaggaaaat 42123660  T
Q  301 tgtcttctat 310  Q
    ||||||||||    
T  42123661 tgtcttctat 42123670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 180
Target Start/End: Complemental strand, 41713693 - 41713612
Alignment:
Q  99 tcagtaacattcatcatggcttcaaactttttgaaataggcttttggtagaggaccactaaagttattgcttgagatatcaa 180  Q
    |||||||||||| |||||| || | | ||||| ||||||||||||||||| |||||||| |||| |||||  ||||||||||    
T  41713693 tcagtaacattcttcatggtttgataattttttaaataggcttttggtagcggaccactgaagtcattgcccgagatatcaa 41713612  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 210
Target Start/End: Complemental strand, 41572115 - 41572040
Alignment:
Q  135 taggcttttggtagaggaccactaaagttattgcttgagatatcaaaaatagttaaatctggaaatggatgcttga 210  Q
    |||||||||||||| || ||||| |||||||||  ||| |||||||||||| |||||   ||||||||||||||||    
T  41572115 taggcttttggtagtgggccactgaagttattggatgaaatatcaaaaataattaaactaggaaatggatgcttga 41572040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 210
Target Start/End: Complemental strand, 41617754 - 41617679
Alignment:
Q  135 taggcttttggtagaggaccactaaagttattgcttgagatatcaaaaatagttaaatctggaaatggatgcttga 210  Q
    |||||||||||||| || ||||| |||||||||  ||| |||||||||||| |||||   ||||||||||||||||    
T  41617754 taggcttttggtagtgggccactgaagttattggatgaaatatcaaaaataattaaactaggaaatggatgcttga 41617679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 298
Target Start/End: Original strand, 41444445 - 41444510
Alignment:
Q  233 atgcaacttattgtctcgcaaaagcaacactttcaaatattgcaaggtttgaagccaatgaggaaa 298  Q
    ||||||||||||| ||||||||| ||  |||||||||| |  ||| |||||||||||||| |||||    
T  41444445 atgcaacttattggctcgcaaaaccagtactttcaaatgtgacaaagtttgaagccaatggggaaa 41444510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 121; Significance: 5e-62; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 94 - 310
Target Start/End: Original strand, 12248416 - 12248632
Alignment:
Q  94 ccaactcagtaacattcatcatggcttcaaactttttgaaataggcttttggtagaggaccactaaagttattgcttgagatatcaaaaatagttaaatc 193  Q
    |||| |||| ||||||| ||||||||||||||||||  |||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||      
T  12248416 ccaattcagcaacattcttcatggcttcaaacttttcaaaataggcatttggtagcggaccactaaagttattgcctgagatatcaaaaatagttaaact 12248515  T
Q  194 tggaaatggatgcttgagctttggattaacaatgataccatgcaacttattgtctcgcaaaagcaacactttcaaatattgcaaggtttgaagccaatga 293  Q
    |||||||||||||||    ||| ||||||||||||||||||||||||||||||||||||  ||||| |||||||||| |||||  ||||||||||||| |    
T  12248516 tggaaatggatgctttgtatttagattaacaatgataccatgcaacttattgtctcgcagcagcaaaactttcaaatcttgcagtgtttgaagccaatca 12248615  T
Q  294 ggaaaattgtcttctat 310  Q
    ||||| | |||||||||    
T  12248616 ggaaactcgtcttctat 12248632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 79 - 310
Target Start/End: Complemental strand, 11994528 - 11994297
Alignment:
Q  79 tattccacatatattccaactcagtaacattcatcatggcttcaaactttttgaaataggcttttggtagaggaccactaaagttattgcttgagatatc 178  Q
    |||||| ||| ||| |||| |||| ||||||| ||||||||||||||||||  |||||||| |||||||| ||||||||||||||||||| | |||||||    
T  11994528 tattcctcatgtataccaattcagcaacattcttcatggcttcaaacttttcaaaataggcatttggtagcggaccactaaagttattgccttagatatc 11994429  T
Q  179 aaaaatagttaaatctggaaatggatgcttgagctttggattaacaatgataccatgcaacttattgtctcgcaaaagcaacactttcaaatattgcaag 278  Q
    |||||||||||||  |||||||||||||||    ||| |||||||||||||| |||||||||||||||||||||  ||||| |||||||||| |||||      
T  11994428 aaaaatagttaaacttggaaatggatgctttgtatttagattaacaatgatatcatgcaacttattgtctcgcagcagcaaaactttcaaatcttgcagt 11994329  T
Q  279 gtttgaagccaatgaggaaaattgtcttctat 310  Q
    ||||||||||||| |||||| | |||||||||    
T  11994328 gtttgaagccaatcaggaaactcgtcttctat 11994297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 310
Target Start/End: Complemental strand, 32682043 - 32681834
Alignment:
Q  101 agtaacattcatcatggcttcaaactttttgaaataggcttttggtagaggaccactaaagttattgcttgagatatcaaaaatagttaaatctggaaat 200  Q
    |||||||||| |||||||||||||    || ||||| ||||||| || |  |||||| ||||| || |  ||||||||||||||  ||||    ||||||    
T  32682043 agtaacattcttcatggcttcaaaaaaatttaaataagcttttgatataaaaccactgaagttgtttccagagatatcaaaaatgattaagctaggaaat 32681944  T
Q  201 ggatgcttgagctttggattaacaatgataccatgcaacttattgtctcgcaaaagcaacactttcaaatattgcaaggtttgaagccaatgaggaaaat 300  Q
     |||| | |  ||||  ||| ||||||  |||||||||||| ||||| ||||||| ||| |||||||||| |||||  || ||||||||||  || ||||    
T  32681943 agatgttcgttctttaaattgacaatgggaccatgcaacttgttgtcacgcaaaaccaatactttcaaatcttgcattgtatgaagccaatatgggaaat 32681844  T
Q  301 tgtcttctat 310  Q
    |||| |||||    
T  32681843 tgtcgtctat 32681834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 101 - 310
Target Start/End: Original strand, 11118106 - 11118315
Alignment:
Q  101 agtaacattcatcatggcttcaaactttttgaaataggcttttggtagaggaccactaaagttattgcttgagatatcaaaaatagttaaatctggaaat 200  Q
    |||||||||| |||| |||||| | ||||| ||||||||||||||||||  |||||||||| | ||||  ||||||||||||||  ||||   |||||||    
T  11118106 agtaacattcttcatagcttcatagttttttaaataggcttttggtagaaaaccactaaagctgttgcccgagatatcaaaaatgattaagcttggaaat 11118205  T
Q  201 ggatgcttgagctttggattaacaatgataccatgcaacttattgtctcgcaaaagcaacactttcaaatattgcaaggtttgaagccaatgaggaaaat 300  Q
     |||||| || ||||  |||  |||||  |||||||||||||||||||||||||| ||| |||||||||| | |||| ||||||||||||| |||||||     
T  11118206 agatgctcgatctttaaattttcaatgggaccatgcaacttattgtctcgcaaaaccaatactttcaaatctggcaatgtttgaagccaatcaggaaaac 11118305  T
Q  301 tgtcttctat 310  Q
    ||||||||||    
T  11118306 tgtcttctat 11118315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 101 - 310
Target Start/End: Complemental strand, 25523161 - 25522952
Alignment:
Q  101 agtaacattcatcatggcttcaaactttttgaaataggcttttggtagaggaccactaaagttattgcttgagatatcaaaaatagttaaatctggaaat 200  Q
    |||||||||| ||||||||||| | ||| | ||||||||||||||||||  |||||  || || || | |||||||||||||||  |||||  | |||||    
T  25523161 agtaacattcttcatggcttcataatttcttaaataggcttttggtagaaaaccacctaaattgttacctgagatatcaaaaatgattaaactttgaaat 25523062  T
Q  201 ggatgcttgagctttggattaacaatgataccatgcaacttattgtctcgcaaaagcaacactttcaaatattgcaaggtttgaagccaatgaggaaaat 300  Q
    | ||||||||  |||  ||| |||| |  |||||||||||| ||||||||||||| ||||||||||||||  ||||  |||||||||||||  |||||||    
T  25523061 gaatgcttgatttttaaattgacaagggaaccatgcaacttgttgtctcgcaaaaccaacactttcaaatcctgcattgtttgaagccaatccggaaaat 25522962  T
Q  301 tgtcttctat 310  Q
    ||||||||||    
T  25522961 tgtcttctat 25522952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 230 - 310
Target Start/End: Original strand, 24140921 - 24141001
Alignment:
Q  230 accatgcaacttattgtctcgcaaaagcaacactttcaaatattgcaaggtttgaagccaatgaggaaaattgtcttctat 310  Q
    |||||| ||||||||||||||||||| ||| |||| |||||||||||  ||| ||||||||| || |||||||||||||||    
T  24140921 accatgtaacttattgtctcgcaaaaccaatacttccaaatattgcagtgttagaagccaatcagaaaaattgtcttctat 24141001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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