View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12367_high_3 (Length: 267)

Name: NF12367_high_3
Description: NF12367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12367_high_3
NF12367_high_3
[»] chr1 (12 HSPs)
chr1 (6-250)||(9093243-9093487)
chr1 (41-250)||(9007288-9007497)
chr1 (19-250)||(8863919-8864150)
chr1 (6-250)||(8868155-8868399)
chr1 (19-246)||(9099605-9099832)
chr1 (6-250)||(9065492-9065736)
chr1 (33-247)||(9136284-9136498)
chr1 (33-249)||(8972240-8972456)
chr1 (82-249)||(9072075-9072242)
chr1 (45-120)||(9475363-9475438)
chr1 (196-246)||(9444110-9444160)
chr1 (23-123)||(8924723-8924823)


Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 6 - 250
Target Start/End: Complemental strand, 9093487 - 9093243
Alignment:
Q  6 agaaatcagatgtagacaagtaattgcgaggaaatgaagagcaattatcttgttgaattccaggatccactagcctgattgtgaaattgttgtagttgat 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9093487 agaaatcagatgtagacaagtaattgcgaggaaatgaagagcaattatcttgttgaattccaggatccactagcctgattgtgaaattgttgtagttgat 9093388  T
Q  106 ggacttcacattgtattttgcagagtacaaatttattgttgttacattattttcacaagatagctcgtaatttttgttcccgcaatgaattgggtcattt 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  9093387 ggacttcacattgtattttgcagagtacaaatttattgttgttacattattttcacaagatagctcgtaacttctgttcccgcaatgaattgggtcattt 9093288  T
Q  206 tttagtcgaaatgggtaagttatgttggaaattttgccacaagat 250  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  9093287 tttagtcgaaatggataagttatgttggaaattttgccacaagat 9093243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 41 - 250
Target Start/End: Original strand, 9007288 - 9007497
Alignment:
Q  41 gaagagcaattatcttgttgaattccaggatccactagcctgattgtgaaattgttgtagttgatggacttcacattgtattttgcagagtacaaattta 140  Q
    ||||||||||||  |||||||| |||| |||| || |  | ||||||||||||||||||||||||||| | |||||  |||||| | || ||||||||||    
T  9007288 gaagagcaattagattgttgaactccaagatcaaccaatcggattgtgaaattgttgtagttgatggattgcacatgatattttcctgaatacaaattta 9007387  T
Q  141 ttgttgttacattattttcacaagatagctcgtaatttttgttcccgcaatgaattgggtcattttttagtcgaaatgggtaagttatgttggaaatttt 240  Q
      ||||| |||||||||||||| | ||  |||||  |||||| |||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||    
T  9007388 aagttgtcacattattttcacatgctaattcgtaccttttgtccccgcaattaattgggtcattatttaatcgaaatgggtaagttatgttggaaatttt 9007487  T
Q  241 gccacaagat 250  Q
    ||||||||||    
T  9007488 gccacaagat 9007497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 8864150 - 8863919
Alignment:
Q  19 agacaagtaattgcgaggaaatgaagagcaattatcttgttgaattccaggatccactagcctgattgtgaaattgttgtagttgatggacttcacattg 118  Q
    ||||||| ||| |||||||| |||||||||||||  |||||||| ||| ||||| || || ||||||||||||||||||||||||||||| | |||||      
T  8864150 agacaagaaatagcgaggaagtgaagagcaattagattgttgaactccgggatcaaccagtctgattgtgaaattgttgtagttgatggattgcacatga 8864051  T
Q  119 tattttgcagagtacaaatttattgttgttacattattttcacaagatagctcgtaatttttgttcccgcaatgaattgggtcattttttagtcgaaatg 218  Q
    |||||| | || ||||||| ||  ||||| ||||||||| ||||||||||||| ||  |  ||| ||||||||||||||| |||| ||||| ||||||||    
T  8864050 tattttcccgaatacaaatataaagttgtaacattatttgcacaagatagctcatacctgctgtccccgcaatgaattggatcatcttttaatcgaaatg 8863951  T
Q  219 ggtaagttatgttggaaattttgccacaagat 250  Q
    | ||| ||||||| |||||||| |||||||||    
T  8863950 gataacttatgtttgaaattttaccacaagat 8863919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 6 - 250
Target Start/End: Complemental strand, 8868399 - 8868155
Alignment:
Q  6 agaaatcagatgtagacaagtaattgcgaggaaatgaagagcaattatcttgttgaattccaggatccactagcctgattgtgaaattgttgtagttgat 105  Q
    |||||||||||  || |||| ||| | ||||||||||||| |||||||||||||||||||||  ||| || |  | |||| |||||||||||||||||||    
T  8868399 agaaatcagattgagtcaagaaatagagaggaaatgaagaacaattatcttgttgaattccaatatcaaccaatcggattatgaaattgttgtagttgat 8868300  T
Q  106 ggacttcacattgtattttgcagagtacaaatttattgttgttacattattttcacaagatagctcgtaatttttgttcccgcaatgaattgggtcattt 205  Q
    ||| |||||||  |||||| | || ||||||||||  ||||| || ||||||||||||||||| || ||  |  | | ||||||||||||||| |||| |    
T  8868299 ggatttcacataatattttccggaatacaaatttaaggttgtcacgttattttcacaagatagttcatacctgctatccccgcaatgaattggatcatct 8868200  T
Q  206 tttagtcgaaatgggtaagttatgttggaaattttgccacaagat 250  Q
    |||| ||||||||| ||| ||||||| |||||||| |||||||||    
T  8868199 tttaatcgaaatggataacttatgtttgaaattttaccacaagat 8868155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 9099832 - 9099605
Alignment:
Q  19 agacaagtaattgcgaggaaatgaagagcaattatcttgttgaattccaggatccactagcctgattgtgaaattgttgtagttgatggacttcacattg 118  Q
    ||||||| ||| ||| |||| |||||||||||||  |||||||| | ||||||| ||||  | |||||||||||| ||||||||||||||||  |||| |    
T  9099832 agacaaggaatggcgcggaagtgaagagcaattagattgttgaacttcaggatcaactaatcggattgtgaaattattgtagttgatggactggacatgg 9099733  T
Q  119 tattttgcagagtacaaatttattgttgttacattattttcacaagatagctcgtaatttttgttcccgcaatgaattgggtcattttttagtcgaaatg 218  Q
    |||||||||||||| |||| || | |||| |||||||||||||||| ||| |||||  |  |||  ||||| ||  ||||||||| ||||| ||||||||    
T  9099732 tattttgcagagtataaatataattttgtcacattattttcacaagctagttcgtacctgctgtctccgcattgttttgggtcatcttttaatcgaaatg 9099633  T
Q  219 ggtaagttatgttggaaattttgccaca 246  Q
    ||||| ||||||| || ||||| |||||    
T  9099632 ggtaacttatgtttgatattttcccaca 9099605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 6 - 250
Target Start/End: Original strand, 9065492 - 9065736
Alignment:
Q  6 agaaatcagatgtagacaagtaattgcgaggaaatgaagagcaattatcttgttgaattccaggatccactagcctgattgtgaaattgttgtagttgat 105  Q
    |||||| ||||  ||||||  ||| ||| |||| ||||||||||||   || ||||| ||||||||| || || |||||||| |||||||||||||||||    
T  9065492 agaaattagatcgagacaacgaatggcgtggaagtgaagagcaattcatttcttgaactccaggatcaaccagtctgattgtaaaattgttgtagttgat 9065591  T
Q  106 ggacttcacattgtattttgcagagtacaaatttattgttgttacattattttcacaagatagctcgtaatttttgttcccgcaatgaattgggtcattt 205  Q
    |||    ||||| |||||||  |||||||||| ||  ||||| |||||||||||||||||||| || || ||  |||| ||||| || ||||| |||| |    
T  9065592 ggaacggacattatattttgtggagtacaaatataaagttgtcacattattttcacaagatagttcatacttgctgttaccgcagtgtattggatcatct 9065691  T
Q  206 tttagtcgaaatgggtaagttatgttggaaattttgccacaagat 250  Q
    |||| ||||||||| ||| |||| || || |||||||||||||||    
T  9065692 tttaatcgaaatggataacttatttttgatattttgccacaagat 9065736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 33 - 247
Target Start/End: Complemental strand, 9136498 - 9136284
Alignment:
Q  33 gaggaaatgaagagcaattatcttgttgaattccaggatccactagcctgattgtgaaattgttgtagttgatggacttcacattgtattttgcagagta 132  Q
    |||||| |||||||||||||  |||||||| ||||||||| || |  | ||||||||||| ||||||||||||||||| |||||  ||||||||||||||    
T  9136498 gaggaagtgaagagcaattagattgttgaactccaggatcaaccaatcggattgtgaaatcgttgtagttgatggactgcacataatattttgcagagta 9136399  T
Q  133 caaatttattgttgttacattattttcacaagatagctcgtaatttttgttcccgcaatgaattgggtcattttttagtcgaaatgggtaagttatgttg 232  Q
     |||| ||   |||||| |||||||||||||| ||| || ||| |  |||  ||||| ||  ||||||||| ||||| |||||| ||  |  |||| |||    
T  9136398 taaatataaacttgttatattattttcacaagctagttcataactgctgtcaccgcagtgttttgggtcatcttttaatcgaaaaggagagcttatcttg 9136299  T
Q  233 gaaattttgccacaa 247  Q
    |||||||||||||||    
T  9136298 gaaattttgccacaa 9136284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 33 - 249
Target Start/End: Original strand, 8972240 - 8972456
Alignment:
Q  33 gaggaaatgaagagcaattatcttgttgaattccaggatccactagcctgattgtgaaattgttgtagttgatggacttcacattgtattttgcagagta 132  Q
    |||||| |||||||||||||  |||||||||||||||||| || |  | |||||||||||||||||||||||| |||   ||||  ||||||||||| ||    
T  8972240 gaggaagtgaagagcaattagattgttgaattccaggatcaaccaatcggattgtgaaattgttgtagttgatcgaccggacatgatattttgcagaata 8972339  T
Q  133 caaatttattgttgttacattattttcacaagatagctcgtaatttttgttcccgcaatgaattgggtcattttttagtcgaaatgggtaagttatgttg 232  Q
     |||| ||  ||||| |||||||||||||||| ||| || ||  |  |||  || ||| |  ||||||||| ||||| ||||||||| |||  ||||||     
T  8972340 taaatataaagttgtgacattattttcacaagctagttcatacctgctgtctccacaacgttttgggtcatcttttaatcgaaatggataacatatgttt 8972439  T
Q  233 gaaattttgccacaaga 249  Q
     ||||||||||||||||    
T  8972440 aaaattttgccacaaga 8972456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 82 - 249
Target Start/End: Complemental strand, 9072242 - 9072075
Alignment:
Q  82 gattgtgaaattgttgtagttgatggacttcacattgtattttgcagagtacaaatttattgttgttacattattttcacaagatagctcgtaatttttg 181  Q
    ||||||||||||||||||||||||||| | |||||  |||||| | || ||||||| ||  ||||  |||||||||||||||||||| |||||  |  |     
T  9072242 gattgtgaaattgttgtagttgatggattgcacataatattttcccgaatacaaatataaagttgccacattattttcacaagatagttcgtacctgctt 9072143  T
Q  182 ttcccgcaatgaattgggtcattttttagtcgaaatgggtaagttatgttggaaattttgccacaaga 249  Q
    |  ||||| ||  | ||||||| || || ||||||||||||| |||||||||||||||||||||||||    
T  9072142 tctccgcagtgtttggggtcatcttgtaatcgaaatgggtaacttatgttggaaattttgccacaaga 9072075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 120
Target Start/End: Complemental strand, 9475438 - 9475363
Alignment:
Q  45 agcaattatcttgttgaattccaggatccactagcctgattgtgaaattgttgtagttgatggacttcacattgta 120  Q
    |||||| ||| | ||||||||||||||| ||||| ||||||||| | || | ||||||||| ||||||||||||||    
T  9475438 agcaatcatcctcttgaattccaggatcaactagtctgattgtgtagttatcgtagttgattgacttcacattgta 9475363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 246
Target Start/End: Complemental strand, 9444160 - 9444110
Alignment:
Q  196 tgggtcattttttagtcgaaatgggtaagttatgttggaaattttgccaca 246  Q
    |||||| | ||||||||| ||||| |||||||||||||||||||| |||||    
T  9444160 tgggtcgtgttttagtcggaatggataagttatgttggaaatttttccaca 9444110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 8924723 - 8924823
Alignment:
Q  23 aagtaattgcgaggaaatgaagagcaattatcttgttgaattccaggatccactagcctgattgtgaaattgttgtagttgatggacttcacattgtatt 122  Q
    ||||||| ||||||||| || ||||||| | | | || |||||| ||||| ||||  ||||||||| | || ||||||||||| || ||||||| |||||    
T  8924723 aagtaatagcgaggaaaggaggagcaatcaccctcttcaattccgggatcaactattctgattgtgtagttattgtagttgattgatttcacatagtatt 8924822  T
Q  123 t 123  Q
    |    
T  8924823 t 8924823  T

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