View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12367_low_1 (Length: 452)

Name: NF12367_low_1
Description: NF12367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12367_low_1
NF12367_low_1
[»] chr5 (3 HSPs)
chr5 (19-443)||(38580791-38581210)
chr5 (319-443)||(38573524-38573648)
chr5 (153-237)||(38573335-38573420)
[»] chr7 (12 HSPs)
chr7 (275-443)||(18632142-18632310)
chr7 (275-443)||(18644850-18645018)
chr7 (275-443)||(18647436-18647604)
chr7 (319-443)||(18522912-18523036)
chr7 (275-443)||(18600314-18600482)
chr7 (275-443)||(18652144-18652312)
chr7 (153-237)||(18522718-18522803)
chr7 (153-232)||(18600164-18600244)
chr7 (153-232)||(18632380-18632460)
chr7 (153-232)||(18645088-18645168)
chr7 (153-232)||(18647674-18647754)
chr7 (153-232)||(18652382-18652462)


Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 19 - 443
Target Start/End: Original strand, 38580791 - 38581210
Alignment:
Q  19 ttaaaatgtgtgatgagacagtttaatttaaccacaaattagctgttat------gttacagcttaaacaagctgtaatttctggtattattgttatacc 112  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||||      |||||||||||||||||||||||||||||||||||||||||||||    
T  38580791 ttaaaatgtgtgatgagaccgtttaatttaaccacaaattagttgttatcttatcgttacagcttaaacaagctgtaatttctggtattattgttatacc 38580890  T
Q  113 ttatcattatccgttaatgctgttaagaaaatgttacacgaatgaagtagtatattaaagacaaaacatgttacttgttcatatcaattaaatttgtgta 212  Q
    ||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  38580891 ttatcattatccgttaatgttgttaagaaaatggtacaccaatgaagtagtatattaaagacaaaacatattacttgttcatatcaattaaatttgtgta 38580990  T
Q  213 caatcttgcactcttgaattcaatttgtttttggaaacatggacgcaaagacagcaacaaattttacaaacatgatattataccgaacaattttcaaata 312  Q
    |||||||| |||||||           ||||||||||||||||||||||| ||||||||||||||  ||||||||||||| |||||||||||||||||||    
T  38580991 caatcttgtactcttg-----------tttttggaaacatggacgcaaaggcagcaacaaattttggaaacatgatattaaaccgaacaattttcaaata 38581079  T
Q  313 tgcacatattaatacaacagcctcggattctggcggcaaagttctagagttaaatgtttgtattgacatgccccctaaggttgtatctgatggcttttgg 412  Q
    |||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  38581080 tgcatatattaatacaacagcctcggatcctggcggcaaagttttagagttaaatgtttgtattgacatgccccctaaggttgtatctgacggcttttgg 38581179  T
Q  413 gctaatcatgatcaagctgcaatgcctatgc 443  Q
    |||||||||||||||||||||||||||||||    
T  38581180 gctaatcatgatcaagctgcaatgcctatgc 38581210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 319 - 443
Target Start/End: Original strand, 38573524 - 38573648
Alignment:
Q  319 tattaatacaacagcctcggattctggcggcaaagttctagagttaaatgtttgtattgacatgccccctaaggttgtatctgatggcttttgggctaat 418  Q
    |||||||||||||||||| ||| ||| ||||||| || |||  ||||||||||||||||||||||| || |||||||||||| |||||  ||||||||||    
T  38573524 tattaatacaacagcctcagatcctgacggcaaatttttagtcttaaatgtttgtattgacatgccacccaaggttgtatctaatggcaattgggctaat 38573623  T
Q  419 catgatcaagctgcaatgcctatgc 443  Q
    |||||||||||||||||||||||||    
T  38573624 catgatcaagctgcaatgcctatgc 38573648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 153 - 237
Target Start/End: Original strand, 38573335 - 38573420
Alignment:
Q  153 aatgaagtagt-atattaaagacaaaacatgttacttgttcatatcaattaaatttgtgtacaatcttgcactcttgaattcaatt 237  Q
    ||||||||||| |||||||| ||| | | ||||||||||||| || |||||||||||| ||||||||||||||||| |||||||||    
T  38573335 aatgaagtagttatattaaatacacatcctgttacttgttcaaattaattaaatttgtttacaatcttgcactcttcaattcaatt 38573420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 275 - 443
Target Start/End: Complemental strand, 18632310 - 18632142
Alignment:
Q  275 tttacaaacatgatattataccgaacaattttcaaatatgcacatattaatacaacagcctcggattctggcggcaaagttctagagttaaatgtttgta 374  Q
    |||||||| ||||||||| |||||||||||||   |  | ||  |||||||||||||||||||||| |||  |||||| || |||  |||||||||||||    
T  18632310 tttacaaatatgatattagaccgaacaatttttccacgttcatctattaatacaacagcctcggatcctgaaggcaaatttttagtcttaaatgtttgta 18632211  T
Q  375 ttgacatgccccctaaggttgtatctgatggcttttgggctaatcatgatcaagctgcaatgcctatgc 443  Q
    |||||||||| || ||||||  ||||||||||  |||||||||||||||||||||||||||||||||||    
T  18632210 ttgacatgccacccaaggttacatctgatggcaattgggctaatcatgatcaagctgcaatgcctatgc 18632142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 275 - 443
Target Start/End: Complemental strand, 18645018 - 18644850
Alignment:
Q  275 tttacaaacatgatattataccgaacaattttcaaatatgcacatattaatacaacagcctcggattctggcggcaaagttctagagttaaatgtttgta 374  Q
    |||||||| ||||||||| |||||||||||||   |  | ||  |||||||||||||||||||||| |||  |||||| || |||  |||||||||||||    
T  18645018 tttacaaatatgatattagaccgaacaatttttccacgttcatctattaatacaacagcctcggatcctgaaggcaaatttttagtcttaaatgtttgta 18644919  T
Q  375 ttgacatgccccctaaggttgtatctgatggcttttgggctaatcatgatcaagctgcaatgcctatgc 443  Q
    |||||||||| || ||||||  ||||||||||  |||||||||||||||||||||||||||||||||||    
T  18644918 ttgacatgccacccaaggttacatctgatggcaattgggctaatcatgatcaagctgcaatgcctatgc 18644850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 275 - 443
Target Start/End: Complemental strand, 18647604 - 18647436
Alignment:
Q  275 tttacaaacatgatattataccgaacaattttcaaatatgcacatattaatacaacagcctcggattctggcggcaaagttctagagttaaatgtttgta 374  Q
    |||||||| ||||||||| |||||||||||||   |  | ||  |||||||||||||||||||||| |||  |||||| || |||  |||||||||||||    
T  18647604 tttacaaatatgatattagaccgaacaatttttccacgttcatctattaatacaacagcctcggatcctgaaggcaaatttttagtcttaaatgtttgta 18647505  T
Q  375 ttgacatgccccctaaggttgtatctgatggcttttgggctaatcatgatcaagctgcaatgcctatgc 443  Q
    |||||||||| || ||||||  ||||||||||  |||||||||||||||||||||||||||||||||||    
T  18647504 ttgacatgccacccaaggttacatctgatggcaattgggctaatcatgatcaagctgcaatgcctatgc 18647436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 319 - 443
Target Start/End: Original strand, 18522912 - 18523036
Alignment:
Q  319 tattaatacaacagcctcggattctggcggcaaagttctagagttaaatgtttgtattgacatgccccctaaggttgtatctgatggcttttgggctaat 418  Q
    ||||||| |||||||||||||| ||| ||||||| || |||  ||||||||||||||||||||||| || ||||||  ||||||||||  ||||||||||    
T  18522912 tattaatgcaacagcctcggatcctgacggcaaatttttagtcttaaatgtttgtattgacatgccacccaaggttacatctgatggcaattgggctaat 18523011  T
Q  419 catgatcaagctgcaatgcctatgc 443  Q
    |||||||||||||||||||||||||    
T  18523012 catgatcaagctgcaatgcctatgc 18523036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 275 - 443
Target Start/End: Original strand, 18600314 - 18600482
Alignment:
Q  275 tttacaaacatgatattataccgaacaattttcaaatatgcacatattaatacaacagcctcggattctggcggcaaagttctagagttaaatgtttgta 374  Q
    |||||||| ||||||||| |||||||||||||   |  | ||  |||||||||||||||||||||| |||  |||||| || |||  |||||||||||||    
T  18600314 tttacaaatatgatattagaccgaacaatttttccacgttcatctattaatacaacagcctcggatcctgaaggcaaatttttagtcttaaatgtttgta 18600413  T
Q  375 ttgacatgccccctaaggttgtatctgatggcttttgggctaatcatgatcaagctgcaatgcctatgc 443  Q
    |||||||||| || ||||||  |||||||||   |||||||||||||||||||||||||||||||||||    
T  18600414 ttgacatgccacccaaggttacatctgatggaaattgggctaatcatgatcaagctgcaatgcctatgc 18600482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 275 - 443
Target Start/End: Complemental strand, 18652312 - 18652144
Alignment:
Q  275 tttacaaacatgatattataccgaacaattttcaaatatgcacatattaatacaacagcctcggattctggcggcaaagttctagagttaaatgtttgta 374  Q
    |||||||| ||||||||| |||||||||||||   |  | ||  |||||||||||||||||||||| |||  |||||| || |||  |||||||||||||    
T  18652312 tttacaaatatgatattagaccgaacaatttttccacgttcatctattaatacaacagcctcggatcctgaaggcaaatttttagtcttaaatgtttgta 18652213  T
Q  375 ttgacatgccccctaaggttgtatctgatggcttttgggctaatcatgatcaagctgcaatgcctatgc 443  Q
    || ||||||| || ||||||  ||||||||||  |||||||||||||||||||||||||||||||||||    
T  18652212 ttaacatgccacccaaggttacatctgatggcaattgggctaatcatgatcaagctgcaatgcctatgc 18652144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 153 - 237
Target Start/End: Original strand, 18522718 - 18522803
Alignment:
Q  153 aatgaagtagt-atattaaagacaaaacatgttacttgttcatatcaattaaatttgtgtacaatcttgcactcttgaattcaatt 237  Q
    ||||||||||| |||||||||||| | | |||||||||||||||| |||||||||||| ||||||||| ||||||| |||||||||    
T  18522718 aatgaagtagttatattaaagacacatcttgttacttgttcatattaattaaatttgtttacaatcttacactcttcaattcaatt 18522803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 153 - 232
Target Start/End: Original strand, 18600164 - 18600244
Alignment:
Q  153 aatgaagtagt-atattaaagacaaaacatgttacttgttcatatcaattaaatttgtgtacaatcttgcactcttgaatt 232  Q
    ||||||||||| |||||||||||| | | |||||||||||||||| |||||||||||| ||||||||| ||||||| ||||    
T  18600164 aatgaagtagttatattaaagacacatcttgttacttgttcatattaattaaatttgtttacaatcttacactcttcaatt 18600244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 153 - 232
Target Start/End: Complemental strand, 18632460 - 18632380
Alignment:
Q  153 aatgaagtagt-atattaaagacaaaacatgttacttgttcatatcaattaaatttgtgtacaatcttgcactcttgaatt 232  Q
    ||||||||||| |||||||||||| | | |||||||||||||||| |||||||||||| ||||||||| ||||||| ||||    
T  18632460 aatgaagtagttatattaaagacacatcttgttacttgttcatattaattaaatttgtttacaatcttacactcttcaatt 18632380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 153 - 232
Target Start/End: Complemental strand, 18645168 - 18645088
Alignment:
Q  153 aatgaagtagt-atattaaagacaaaacatgttacttgttcatatcaattaaatttgtgtacaatcttgcactcttgaatt 232  Q
    ||||||||||| |||||||||||| | | |||||||||||||||| |||||||||||| ||||||||| ||||||| ||||    
T  18645168 aatgaagtagttatattaaagacacatcttgttacttgttcatattaattaaatttgtttacaatcttacactcttcaatt 18645088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 153 - 232
Target Start/End: Complemental strand, 18647754 - 18647674
Alignment:
Q  153 aatgaagtagt-atattaaagacaaaacatgttacttgttcatatcaattaaatttgtgtacaatcttgcactcttgaatt 232  Q
    ||||||||||| |||||||||||| | | |||||||||||||||| |||||||||||| ||||||||| ||||||| ||||    
T  18647754 aatgaagtagttatattaaagacacatcttgttacttgttcatattaattaaatttgtttacaatcttacactcttcaatt 18647674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 153 - 232
Target Start/End: Complemental strand, 18652462 - 18652382
Alignment:
Q  153 aatgaagtagt-atattaaagacaaaacatgttacttgttcatatcaattaaatttgtgtacaatcttgcactcttgaatt 232  Q
    ||||||||||| |||||||||||| | | |||||||||||||||| |||||||||||| ||||||||| ||||||| ||||    
T  18652462 aatgaagtagttatattaaagacacatcttgttacttgttcatattaattaaatttgtttacaatcttacactcttcaatt 18652382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University