View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12367_low_2 (Length: 320)
Name: NF12367_low_2
Description: NF12367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12367_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 16 - 310
Target Start/End: Original strand, 25503943 - 25504238
Alignment:
| Q |
16 |
cagtattttgtattggctcactgcgcccatgttgccttgcctgtcatctcaccatataattgattattagtgtatgatatccttatcttgattgtatatg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
25503943 |
cagtattttgtattggctcactgcgcccatgttgccttgcctgtcacctcaccatataattgattattagtgtatgatatccttatcttgattatatatg |
25504042 |
T |
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| Q |
116 |
gaccacaaatatagtttgtcgnnnnnnnnn-aagatatagtttatgttgaataaatcatttaataatttacatatgattatgttaaactattactaaggc |
214 |
Q |
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|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25504043 |
gaccacaaatatagtttgtctttttttttttaagatatagtttatgtcgaataaatcatttaataatttacatatgattatgttaaactattactaaggc |
25504142 |
T |
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| Q |
215 |
cattgtatacaaccaacccagttattatatactatagaggaacttaaattattagcaaggaactaaattcaaccaaattcagacacaccccttcat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25504143 |
cattgtatacaaccaacccagttattatatactatagaggaacttaaattatcagcaaggaactaaattcaaccaaattcagacacaccccttcat |
25504238 |
T |
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