View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12367_low_4 (Length: 267)

Name: NF12367_low_4
Description: NF12367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12367_low_4
NF12367_low_4
[»] chr1 (12 HSPs)
chr1 (6-250)||(9093243-9093487)
chr1 (41-250)||(9007288-9007497)
chr1 (19-250)||(8863919-8864150)
chr1 (6-250)||(8868155-8868399)
chr1 (19-246)||(9099605-9099832)
chr1 (6-250)||(9065492-9065736)
chr1 (33-247)||(9136284-9136498)
chr1 (33-249)||(8972240-8972456)
chr1 (82-249)||(9072075-9072242)
chr1 (45-120)||(9475363-9475438)
chr1 (196-246)||(9444110-9444160)
chr1 (23-123)||(8924723-8924823)


Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 6 - 250
Target Start/End: Complemental strand, 9093487 - 9093243
Alignment:
Q  6 agaaatcagatgtagacaagtaattgcgaggaaatgaagagcaattatcttgttgaattccaggatccactagcctgattgtgaaattgttgtagttgat 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9093487 agaaatcagatgtagacaagtaattgcgaggaaatgaagagcaattatcttgttgaattccaggatccactagcctgattgtgaaattgttgtagttgat 9093388  T
Q  106 ggacttcacattgtattttgcagagtacaaatttattgttgttacattattttcacaagatagctcgtaatttttgttcccgcaatgaattgggtcattt 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  9093387 ggacttcacattgtattttgcagagtacaaatttattgttgttacattattttcacaagatagctcgtaacttctgttcccgcaatgaattgggtcattt 9093288  T
Q  206 tttagtcgaaatgggtaagttatgttggaaattttgccacaagat 250  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  9093287 tttagtcgaaatggataagttatgttggaaattttgccacaagat 9093243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 41 - 250
Target Start/End: Original strand, 9007288 - 9007497
Alignment:
Q  41 gaagagcaattatcttgttgaattccaggatccactagcctgattgtgaaattgttgtagttgatggacttcacattgtattttgcagagtacaaattta 140  Q
    ||||||||||||  |||||||| |||| |||| || |  | ||||||||||||||||||||||||||| | |||||  |||||| | || ||||||||||    
T  9007288 gaagagcaattagattgttgaactccaagatcaaccaatcggattgtgaaattgttgtagttgatggattgcacatgatattttcctgaatacaaattta 9007387  T
Q  141 ttgttgttacattattttcacaagatagctcgtaatttttgttcccgcaatgaattgggtcattttttagtcgaaatgggtaagttatgttggaaatttt 240  Q
      ||||| |||||||||||||| | ||  |||||  |||||| |||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||    
T  9007388 aagttgtcacattattttcacatgctaattcgtaccttttgtccccgcaattaattgggtcattatttaatcgaaatgggtaagttatgttggaaatttt 9007487  T
Q  241 gccacaagat 250  Q
    ||||||||||    
T  9007488 gccacaagat 9007497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 8864150 - 8863919
Alignment:
Q  19 agacaagtaattgcgaggaaatgaagagcaattatcttgttgaattccaggatccactagcctgattgtgaaattgttgtagttgatggacttcacattg 118  Q
    ||||||| ||| |||||||| |||||||||||||  |||||||| ||| ||||| || || ||||||||||||||||||||||||||||| | |||||      
T  8864150 agacaagaaatagcgaggaagtgaagagcaattagattgttgaactccgggatcaaccagtctgattgtgaaattgttgtagttgatggattgcacatga 8864051  T
Q  119 tattttgcagagtacaaatttattgttgttacattattttcacaagatagctcgtaatttttgttcccgcaatgaattgggtcattttttagtcgaaatg 218  Q
    |||||| | || ||||||| ||  ||||| ||||||||| ||||||||||||| ||  |  ||| ||||||||||||||| |||| ||||| ||||||||    
T  8864050 tattttcccgaatacaaatataaagttgtaacattatttgcacaagatagctcatacctgctgtccccgcaatgaattggatcatcttttaatcgaaatg 8863951  T
Q  219 ggtaagttatgttggaaattttgccacaagat 250  Q
    | ||| ||||||| |||||||| |||||||||    
T  8863950 gataacttatgtttgaaattttaccacaagat 8863919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 6 - 250
Target Start/End: Complemental strand, 8868399 - 8868155
Alignment:
Q  6 agaaatcagatgtagacaagtaattgcgaggaaatgaagagcaattatcttgttgaattccaggatccactagcctgattgtgaaattgttgtagttgat 105  Q
    |||||||||||  || |||| ||| | ||||||||||||| |||||||||||||||||||||  ||| || |  | |||| |||||||||||||||||||    
T  8868399 agaaatcagattgagtcaagaaatagagaggaaatgaagaacaattatcttgttgaattccaatatcaaccaatcggattatgaaattgttgtagttgat 8868300  T
Q  106 ggacttcacattgtattttgcagagtacaaatttattgttgttacattattttcacaagatagctcgtaatttttgttcccgcaatgaattgggtcattt 205  Q
    ||| |||||||  |||||| | || ||||||||||  ||||| || ||||||||||||||||| || ||  |  | | ||||||||||||||| |||| |    
T  8868299 ggatttcacataatattttccggaatacaaatttaaggttgtcacgttattttcacaagatagttcatacctgctatccccgcaatgaattggatcatct 8868200  T
Q  206 tttagtcgaaatgggtaagttatgttggaaattttgccacaagat 250  Q
    |||| ||||||||| ||| ||||||| |||||||| |||||||||    
T  8868199 tttaatcgaaatggataacttatgtttgaaattttaccacaagat 8868155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 9099832 - 9099605
Alignment:
Q  19 agacaagtaattgcgaggaaatgaagagcaattatcttgttgaattccaggatccactagcctgattgtgaaattgttgtagttgatggacttcacattg 118  Q
    ||||||| ||| ||| |||| |||||||||||||  |||||||| | ||||||| ||||  | |||||||||||| ||||||||||||||||  |||| |    
T  9099832 agacaaggaatggcgcggaagtgaagagcaattagattgttgaacttcaggatcaactaatcggattgtgaaattattgtagttgatggactggacatgg 9099733  T
Q  119 tattttgcagagtacaaatttattgttgttacattattttcacaagatagctcgtaatttttgttcccgcaatgaattgggtcattttttagtcgaaatg 218  Q
    |||||||||||||| |||| || | |||| |||||||||||||||| ||| |||||  |  |||  ||||| ||  ||||||||| ||||| ||||||||    
T  9099732 tattttgcagagtataaatataattttgtcacattattttcacaagctagttcgtacctgctgtctccgcattgttttgggtcatcttttaatcgaaatg 9099633  T
Q  219 ggtaagttatgttggaaattttgccaca 246  Q
    ||||| ||||||| || ||||| |||||    
T  9099632 ggtaacttatgtttgatattttcccaca 9099605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 6 - 250
Target Start/End: Original strand, 9065492 - 9065736
Alignment:
Q  6 agaaatcagatgtagacaagtaattgcgaggaaatgaagagcaattatcttgttgaattccaggatccactagcctgattgtgaaattgttgtagttgat 105  Q
    |||||| ||||  ||||||  ||| ||| |||| ||||||||||||   || ||||| ||||||||| || || |||||||| |||||||||||||||||    
T  9065492 agaaattagatcgagacaacgaatggcgtggaagtgaagagcaattcatttcttgaactccaggatcaaccagtctgattgtaaaattgttgtagttgat 9065591  T
Q  106 ggacttcacattgtattttgcagagtacaaatttattgttgttacattattttcacaagatagctcgtaatttttgttcccgcaatgaattgggtcattt 205  Q
    |||    ||||| |||||||  |||||||||| ||  ||||| |||||||||||||||||||| || || ||  |||| ||||| || ||||| |||| |    
T  9065592 ggaacggacattatattttgtggagtacaaatataaagttgtcacattattttcacaagatagttcatacttgctgttaccgcagtgtattggatcatct 9065691  T
Q  206 tttagtcgaaatgggtaagttatgttggaaattttgccacaagat 250  Q
    |||| ||||||||| ||| |||| || || |||||||||||||||    
T  9065692 tttaatcgaaatggataacttatttttgatattttgccacaagat 9065736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 33 - 247
Target Start/End: Complemental strand, 9136498 - 9136284
Alignment:
Q  33 gaggaaatgaagagcaattatcttgttgaattccaggatccactagcctgattgtgaaattgttgtagttgatggacttcacattgtattttgcagagta 132  Q
    |||||| |||||||||||||  |||||||| ||||||||| || |  | ||||||||||| ||||||||||||||||| |||||  ||||||||||||||    
T  9136498 gaggaagtgaagagcaattagattgttgaactccaggatcaaccaatcggattgtgaaatcgttgtagttgatggactgcacataatattttgcagagta 9136399  T
Q  133 caaatttattgttgttacattattttcacaagatagctcgtaatttttgttcccgcaatgaattgggtcattttttagtcgaaatgggtaagttatgttg 232  Q
     |||| ||   |||||| |||||||||||||| ||| || ||| |  |||  ||||| ||  ||||||||| ||||| |||||| ||  |  |||| |||    
T  9136398 taaatataaacttgttatattattttcacaagctagttcataactgctgtcaccgcagtgttttgggtcatcttttaatcgaaaaggagagcttatcttg 9136299  T
Q  233 gaaattttgccacaa 247  Q
    |||||||||||||||    
T  9136298 gaaattttgccacaa 9136284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 33 - 249
Target Start/End: Original strand, 8972240 - 8972456
Alignment:
Q  33 gaggaaatgaagagcaattatcttgttgaattccaggatccactagcctgattgtgaaattgttgtagttgatggacttcacattgtattttgcagagta 132  Q
    |||||| |||||||||||||  |||||||||||||||||| || |  | |||||||||||||||||||||||| |||   ||||  ||||||||||| ||    
T  8972240 gaggaagtgaagagcaattagattgttgaattccaggatcaaccaatcggattgtgaaattgttgtagttgatcgaccggacatgatattttgcagaata 8972339  T
Q  133 caaatttattgttgttacattattttcacaagatagctcgtaatttttgttcccgcaatgaattgggtcattttttagtcgaaatgggtaagttatgttg 232  Q
     |||| ||  ||||| |||||||||||||||| ||| || ||  |  |||  || ||| |  ||||||||| ||||| ||||||||| |||  ||||||     
T  8972340 taaatataaagttgtgacattattttcacaagctagttcatacctgctgtctccacaacgttttgggtcatcttttaatcgaaatggataacatatgttt 8972439  T
Q  233 gaaattttgccacaaga 249  Q
     ||||||||||||||||    
T  8972440 aaaattttgccacaaga 8972456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 82 - 249
Target Start/End: Complemental strand, 9072242 - 9072075
Alignment:
Q  82 gattgtgaaattgttgtagttgatggacttcacattgtattttgcagagtacaaatttattgttgttacattattttcacaagatagctcgtaatttttg 181  Q
    ||||||||||||||||||||||||||| | |||||  |||||| | || ||||||| ||  ||||  |||||||||||||||||||| |||||  |  |     
T  9072242 gattgtgaaattgttgtagttgatggattgcacataatattttcccgaatacaaatataaagttgccacattattttcacaagatagttcgtacctgctt 9072143  T
Q  182 ttcccgcaatgaattgggtcattttttagtcgaaatgggtaagttatgttggaaattttgccacaaga 249  Q
    |  ||||| ||  | ||||||| || || ||||||||||||| |||||||||||||||||||||||||    
T  9072142 tctccgcagtgtttggggtcatcttgtaatcgaaatgggtaacttatgttggaaattttgccacaaga 9072075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 120
Target Start/End: Complemental strand, 9475438 - 9475363
Alignment:
Q  45 agcaattatcttgttgaattccaggatccactagcctgattgtgaaattgttgtagttgatggacttcacattgta 120  Q
    |||||| ||| | ||||||||||||||| ||||| ||||||||| | || | ||||||||| ||||||||||||||    
T  9475438 agcaatcatcctcttgaattccaggatcaactagtctgattgtgtagttatcgtagttgattgacttcacattgta 9475363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 246
Target Start/End: Complemental strand, 9444160 - 9444110
Alignment:
Q  196 tgggtcattttttagtcgaaatgggtaagttatgttggaaattttgccaca 246  Q
    |||||| | ||||||||| ||||| |||||||||||||||||||| |||||    
T  9444160 tgggtcgtgttttagtcggaatggataagttatgttggaaatttttccaca 9444110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 8924723 - 8924823
Alignment:
Q  23 aagtaattgcgaggaaatgaagagcaattatcttgttgaattccaggatccactagcctgattgtgaaattgttgtagttgatggacttcacattgtatt 122  Q
    ||||||| ||||||||| || ||||||| | | | || |||||| ||||| ||||  ||||||||| | || ||||||||||| || ||||||| |||||    
T  8924723 aagtaatagcgaggaaaggaggagcaatcaccctcttcaattccgggatcaactattctgattgtgtagttattgtagttgattgatttcacatagtatt 8924822  T
Q  123 t 123  Q
    |    
T  8924823 t 8924823  T

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