View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12368_high_14 (Length: 246)

Name: NF12368_high_14
Description: NF12368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12368_high_14
NF12368_high_14
[»] chr1 (9 HSPs)
chr1 (47-104)||(23705983-23706040)
chr1 (173-228)||(23620377-23620429)
chr1 (173-228)||(23651722-23651774)
chr1 (173-228)||(23737156-23737208)
chr1 (173-228)||(23706528-23706581)
chr1 (55-104)||(23620902-23620951)
chr1 (55-104)||(23652247-23652296)
chr1 (107-140)||(23706056-23706089)
chr1 (55-104)||(23737681-23737730)


Alignment Details
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 23705983 - 23706040
Alignment:
Q  47 catcctccacagctacttctggacattttgatttctcacctctgctcaatgtaagctc 104  Q
    |||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||    
T  23705983 catcctccacagttactcctggacattttgatttctcagctctgctcaatgtaagctc 23706040  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 23620429 - 23620377
Alignment:
Q  173 atcatatggttgacccaagtcttcttcctcttttcatttttcactcactagggaat 228  Q
    ||||||||||||||||||||||||   |||||||||||||||||||||||||||||    
T  23620429 atcatatggttgacccaagtcttc---ctcttttcatttttcactcactagggaat 23620377  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 23651774 - 23651722
Alignment:
Q  173 atcatatggttgacccaagtcttcttcctcttttcatttttcactcactagggaat 228  Q
    ||||||||||||||||||||||||   |||||||||||||||||||||||||||||    
T  23651774 atcatatggttgacccaagtcttc---ctcttttcatttttcactcactagggaat 23651722  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 23737208 - 23737156
Alignment:
Q  173 atcatatggttgacccaagtcttcttcctcttttcatttttcactcactagggaat 228  Q
    ||||||||||||||||||||||||   |||||||||||||||||||||||||||||    
T  23737208 atcatatggttgacccaagtcttc---ctcttttcatttttcactcactagggaat 23737156  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 23706528 - 23706581
Alignment:
Q  173 atcatatggtt-gacccaagtcttcttcctcttttcatttttcactcactagggaat 228  Q
    ||||||||||| ||||||||||||   ||||||||||||||||||||||||||||||    
T  23706528 atcatatggtttgacccaagtctt---cctcttttcatttttcactcactagggaat 23706581  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 23620951 - 23620902
Alignment:
Q  55 acagctacttctggacattttgatttctcacctctgctcaatgtaagctc 104  Q
    ||||||||| |||||| ||||||||||||| | |||||||||||||||||    
T  23620951 acagctactcctggacgttttgatttctcagccctgctcaatgtaagctc 23620902  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 23652296 - 23652247
Alignment:
Q  55 acagctacttctggacattttgatttctcacctctgctcaatgtaagctc 104  Q
    ||||||||| |||||| ||||||||||||| | |||||||||||||||||    
T  23652296 acagctactcctggactttttgatttctcagccctgctcaatgtaagctc 23652247  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 140
Target Start/End: Original strand, 23706056 - 23706089
Alignment:
Q  107 tgttatttgcatatgtgtggtgtgtgctgtattt 140  Q
    ||||||||||||||||||||||||||||||||||    
T  23706056 tgttatttgcatatgtgtggtgtgtgctgtattt 23706089  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 23737730 - 23737681
Alignment:
Q  55 acagctacttctggacattttgatttctcacctctgctcaatgtaagctc 104  Q
    ||||||||| |||||| ||||||||||||| | |||||||||||||||||    
T  23737730 acagctactcctggacgttttgatttctcagccctgctcaatgtaagctc 23737681  T

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