View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12368_high_2 (Length: 675)
Name: NF12368_high_2
Description: NF12368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12368_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 631; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 631; E-Value: 0
Query Start/End: Original strand, 19 - 665
Target Start/End: Complemental strand, 4130316 - 4129670
Alignment:
| Q |
19 |
gatcctgcttttaactcacctttgtaaacaataccaaaggaccctctacctagttcttcactaaaaccccatgtagcttcttttaatgcgtcgtaactaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4130316 |
gatcctgcttttaactcacctttgtaaacaataccaaaggaccctctacctagttcttcactaaaaccccatgtagcttcttttaatgcgtcgtaactaa |
4130217 |
T |
|
| Q |
119 |
acgaacataaatttgtttccaccagagttgcagcttggacaacccttttcggcttcaacaaagtcataaaaacaaccgcagctaagagtatgctattgaa |
218 |
Q |
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| T |
4130216 |
atgaacataaatttgtttccaccagagttgcagcttggacaacccttttcggcttcaacaaagtcataaaaacaaccgcagctaagagtatgctattgaa |
4130117 |
T |
|
| Q |
219 |
gacagtggaactaataagtaaaccttgaagaatcggcttaacccggtcgtgtttcttcgaatcgtgtgtagttgaagaaggaccaaaaggagaaactctt |
318 |
Q |
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| T |
4130116 |
gacagtggaactaataagtaaaccttgaagaatcggcttaacccggtcgtctttcttcaaatcgtgtgtagttgaagaaggaccaaaaggagaaactctt |
4130017 |
T |
|
| Q |
319 |
gttttcacaagtaccaattgtccaccactttgtgctcttccattagcaataggcaatcttttcttccaacaagtattgttattgaaaactgcaacagcac |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4130016 |
gttttcacaagtaccaattgtccaccactttgtgctcttccattagcaataggcaatcttttcttccaacaagtattgttattgaaaactgcaacagcac |
4129917 |
T |
|
| Q |
419 |
acatgcaatcatgcaaacaagattgttgacaatcctgttgagaataaggttgcatcttttcataatctgataaaggccaatccacatctctaagaacagt |
518 |
Q |
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| T |
4129916 |
acatgcaatcatgcaaacaagattgttgacaatcctgttgagaataaggttgcatcttttcataatctgataaaggccaatccacatctctaagaacagt |
4129817 |
T |
|
| Q |
519 |
aaactcatataactcttctggcttcacattcaacccttcaccattattatctccacaaccaagtgtgaaattgacttgacacccgccaaattgattactt |
618 |
Q |
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| T |
4129816 |
aaactcatataactcttctggcttcacattcaacccttcaccattattatctccacaaccaagtgtgaaattgagttgacacccgccaaattgattactt |
4129717 |
T |
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| Q |
619 |
ggatctatcaacgaataaccataaggacatttacaagtaggtctctg |
665 |
Q |
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| T |
4129716 |
ggatctatcaacgaataaccataaggacatttacaagtaggtctctg |
4129670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 23 - 665
Target Start/End: Complemental strand, 4107131 - 4106483
Alignment:
| Q |
23 |
ctgcttttaactcacctttgtaaacaataccaaaggaccctctacctagttcttcactaaaaccccatgtagcttcttttaatgcgtcgtaactaaacga |
122 |
Q |
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||||||| || ||||||||| ||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
4107131 |
ctgctttcaattcacctttgaaaacaattccaaaggaacctctacctagttcttcaataaaaccccatgtagcttcttttaacgcgtcataactaaacga |
4107032 |
T |
|
| Q |
123 |
acataaatttgtttccaccagagttgcagcttggacaacccttttcggcttcaacaaagtcataaaaacaaccgcagctaagagtatgctattgaagaca |
222 |
Q |
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||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||| |
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| T |
4107031 |
acataaatttgtttccaagagagttgtgcctacgacaacccttttcggcttcaacaaagtcaccaaaacaactgcagccaagagtatgctattgaagaca |
4106932 |
T |
|
| Q |
223 |
gtggaactaataagtaaaccttgaagaatcggcttaacccggtcgtgtttcttcgaatc-gtgtgtagttgaagaagg------accaaaaggagaaact |
315 |
Q |
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| |||| ||| |||| |||| |||||||||| ||||| ||| || ||||||| ||| ||| | || || | ||||| |||||||||| |
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| T |
4106931 |
gctgaaccaattagtagacctcgaagaatcgggttaacttggttgtctttcttcaaattagtg-gaaggactagcacctattttaccaagaggagaaact |
4106833 |
T |
|
| Q |
316 |
cttgttttcacaagtaccaattgtccaccactttgtgctcttccattagcaataggcaatcttttcttccaacaagtattgttattgaaaactgcaacag |
415 |
Q |
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|||||||| | |||||| || | |||||||||| | ||||||||||||| | |||| ||||||||||||| ||| | | |||| |||| || |||||| |
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| T |
4106832 |
cttgtttttataagtactaaattaccaccactttcttctcttccattagctagaggcgatcttttcttccagcaattttggttactgaagacaacaacag |
4106733 |
T |
|
| Q |
416 |
cacacatgcaatcatgcaaacaagattgttgacaatcctgttgagaataaggttgcatcttttcataatctgataaaggccaatccacatctctaagaac |
515 |
Q |
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|||||| |||||||||||||||||||||||||| || |||||||||||||| |||||| ||||||||||||||| ||||||| ||||| | ||||||| |
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| T |
4106732 |
aacacatacaatcatgcaaacaagattgttgacagtcatgttgagaataaggctgcatccgttcataatctgataatggccaattcacatttgtaagaac |
4106633 |
T |
|
| Q |
516 |
agtaaactcatataactcttctggcttcacattcaacccttcaccattattatctccacaaccaagtgtgaaattgacttgacacccgccaaattgatta |
615 |
Q |
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| T |
4106632 |
agtaaactcatacaaatcttctggcttcacattcaatccttcaccattatcagctccacaaccaagtgtgaaattgagttgacacccgccaaattgatta |
4106533 |
T |
|
| Q |
616 |
cttggatctatcaacgaataaccataaggacatttacaagtaggtctctg |
665 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4106532 |
cttggatctatcaacgaataaccataaggacatttacaagtaggtctctg |
4106483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 4110388 - 4110335
Alignment:
| Q |
34 |
tcacctttgtaaacaataccaaaggaccctctacctagttcttcactaaaaccc |
87 |
Q |
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||||||||||||||||| ||||| || |||||||||||||||||| |||||||| |
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| T |
4110388 |
tcacctttgtaaacaattccaaatgaacctctacctagttcttcaataaaaccc |
4110335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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