View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12368_high_4 (Length: 454)
Name: NF12368_high_4
Description: NF12368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12368_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 19 - 447
Target Start/End: Original strand, 6965352 - 6965777
Alignment:
| Q |
19 |
gtgtcaagtaagaattagaagtctcgcattattggaggaggggggttgctcacttggttgagttaagggattcaaggaggtaaaatacaaaagtctaaga |
118 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6965352 |
gtgtcaagtaagaattagaagtctcacattattggaggaggggggttgctcacttggttgagttaagggatttaaggaggtaaaatacaaaagtctaaga |
6965451 |
T |
|
| Q |
119 |
ttcggatcctaacaagagaagctgagaaacgagttacaatataatgaaggatactcgtgtaactacaattcatataatgatggtcggagaattttatacc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
6965452 |
ttcggatcctaacaagagaagctgagaaacgagttacaatataatgaaggatactcctgtaactacaattcatataatg---gttggagaattttatacc |
6965548 |
T |
|
| Q |
219 |
atcacatccaattgtcattggattaattgagatttactatgatagttagatactaaagatgttgaattaaaacaataattttaataagaattgcattatg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6965549 |
atcacatccaattgtcattggattaattgagatttactatgatagttagatactaaagatgttgaattaaaacaataattttaataagaattgcattatg |
6965648 |
T |
|
| Q |
319 |
tgaacaccaaaaattgaattgcattatttttggacttgtttatttcatcgaattgatcaaatggcctattgacctatacaaaagtcaaatacctcatgtc |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
6965649 |
tgaacaccaaaaattgaattgcattatttttggacttgtttatttcatcgaattgatcaaatggcctattaacctatacaaaagtcaaatacctcatgtc |
6965748 |
T |
|
| Q |
419 |
tttcatgtcaccatgtgttgttcttctct |
447 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
6965749 |
tttcatgtcaccatgtgttgttcttctct |
6965777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University