View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12368_high_5 (Length: 380)
Name: NF12368_high_5
Description: NF12368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12368_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 43938787 - 43938429
Alignment:
| Q |
1 |
gataactggaaggcaattggagaaagagaagatccatttgtgaataaaccaagcaatgaaaacgagaataagaaagtacaaaatccgtgaattttccttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
43938787 |
gataactggaaggcaattggagaaagagaagatccatttgtgaataaaccaagcaatgaaaacgagaataagaaagtaagaaatccgtgaattttccttc |
43938688 |
T |
|
| Q |
101 |
actttcacaaattggtttaacaacttcactgaagcttcttctaaattattggtaatcatcaaacctttcttactactcattgcagcagtgagaaagnnnn |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
43938687 |
actttcacaaattggtttaacaacttcactgaagcttcttccaaattattgggaatcatcaaacctttcttactactcatagcagcagtgagaaa----a |
43938592 |
T |
|
| Q |
201 |
nnnnngtttctattgattttactacttgctgctaaacatgatcatgatggatcataaaaaaggaaatataacagagcaagaaatgaatattcataatatg |
300 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43938591 |
aaaaagtttctattgattttactacttggtgctaaacatgatcatgatggatcataaaaaaggaaatataacagagcaagaaatgaatattcataatatg |
43938492 |
T |
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| Q |
301 |
ttggtagaaagaaaagaaaagagagaggtacccaatttctctgtggttcataaattcttcttg |
363 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
43938491 |
ttggtagaaagaaaagaaaagagaaaggtacccaatttctctgtggttcataaattcttcttg |
43938429 |
T |
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