View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12368_high_8 (Length: 322)

Name: NF12368_high_8
Description: NF12368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12368_high_8
NF12368_high_8
[»] chr5 (6 HSPs)
chr5 (15-311)||(1501352-1501648)
chr5 (195-311)||(25955943-25956059)
chr5 (196-311)||(38280256-38280371)
chr5 (195-311)||(42250116-42250232)
chr5 (194-303)||(7886354-7886463)
chr5 (195-311)||(38951381-38951497)
[»] chr7 (11 HSPs)
chr7 (195-311)||(496683-496799)
chr7 (194-311)||(11765706-11765823)
chr7 (193-311)||(7527247-7527365)
chr7 (194-311)||(2286457-2286574)
chr7 (195-311)||(25185916-25186032)
chr7 (195-311)||(48057682-48057798)
chr7 (195-311)||(42535197-42535313)
chr7 (202-311)||(23844642-23844751)
chr7 (194-311)||(31427243-31427362)
chr7 (194-250)||(4649481-4649537)
chr7 (195-311)||(40855134-40855251)
[»] chr4 (3 HSPs)
chr4 (195-311)||(52055131-52055247)
chr4 (195-311)||(1158238-1158354)
chr4 (216-311)||(49866671-49866766)
[»] chr2 (2 HSPs)
chr2 (195-311)||(13922185-13922301)
chr2 (198-311)||(11828960-11829073)
[»] chr8 (2 HSPs)
chr8 (200-311)||(3780342-3780453)
chr8 (195-311)||(4076927-4077043)
[»] chr1 (5 HSPs)
chr1 (195-311)||(20186824-20186940)
chr1 (195-311)||(30339636-30339752)
chr1 (195-311)||(51787272-51787388)
chr1 (195-308)||(43740393-43740506)
chr1 (217-311)||(9672955-9673046)
[»] chr3 (6 HSPs)
chr3 (194-311)||(49786392-49786509)
chr3 (189-311)||(47940820-47940942)
chr3 (195-311)||(8152977-8153095)
chr3 (195-311)||(8436879-8436995)
chr3 (195-303)||(29836761-29836868)
chr3 (201-295)||(48778972-48779066)
[»] chr6 (1 HSPs)
chr6 (195-311)||(33594502-33594618)


Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 15 - 311
Target Start/End: Complemental strand, 1501648 - 1501352
Alignment:
Q  15 tcacattggagacacaagtaattgaagttcagagcaatcctgagcaagtaaaagtttttcctcaatgnnnnnnnggtaacaacattgaatcaaatcattt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||||||||||||||||||    
T  1501648 tcacattggagacacaagtaattgaagttcagagcaatcctgagcaagtaaaagtttttccttaatgaaaaaaaggtaacaacattgaatcaaatcattt 1501549  T
Q  115 tgatgtttgaggatcctctaggctctaataaagctccctcttcaggtgcaaaagatttcgttactgtggttcataattttgagtggtgatacatgcacat 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||    
T  1501548 tgatgtttgaggatcctctaggctctaataaagctccctcttcaggtgcaaaagatttcattactgtggttcataattttgagtggtgatacatgcagat 1501449  T
Q  215 tcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctcttctctttcatccatctct 311  Q
     |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  1501448 ccataggtgacatacacacttaaacctccacataaacatatgacatgtagcctagaccccatatacactttgtctctcttctctttcatccatctct 1501352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 195 - 311
Target Start/End: Complemental strand, 25956059 - 25955943
Alignment:
Q  195 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 294  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||| |||||||| ||||| |||||| ||||||||||||||||||    
T  25956059 gagtggtgatacatgcacactcataggtggcatacacatttaaacctccacacaaacatgtgacatgtggcctagaccccacaaacactttgtctctctt 25955960  T
Q  295 ctctttcatccatctct 311  Q
    |  ||||||||||||||    
T  25955959 ccttttcatccatctct 25955943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 196 - 311
Target Start/End: Complemental strand, 38280371 - 38280256
Alignment:
Q  196 agtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctcttc 295  Q
    |||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||| ||||| ||  |||| |||||| |||||||||||||||||||    
T  38280371 agtggtgatacatgtacatccataggtggtatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctcttc 38280272  T
Q  296 tctttcatccatctct 311  Q
    ||||||||||||||||    
T  38280271 tctttcatccatctct 38280256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 195 - 311
Target Start/End: Original strand, 42250116 - 42250232
Alignment:
Q  195 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 294  Q
    |||||||||||||||||||  ||||  || |||| ||||||||||||||||| |||||| |||||||| || || |||||| ||||||||||||||||||    
T  42250116 gagtggtgatacatgcacacccataaatgacatagacacttaaacctccacacaaacatgtgacatgtggcttagaccccacaaacactttgtctctctt 42250215  T
Q  295 ctctttcatccatctct 311  Q
    |  ||||||||||||||    
T  42250216 ccttttcatccatctct 42250232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 194 - 303
Target Start/End: Original strand, 7886354 - 7886463
Alignment:
Q  194 tgagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctct 293  Q
    ||||||||||| |||||| | | ||||||| |||||||||||||||||||||| |||||| |||||||| ||||||| |||| | | | |||||||||||    
T  7886354 tgagtggtgattcatgcatacttataggtgacatacacacttaaacctccacacaaacatgtgacatgtggcctaaatcccacatatattttgtctctct 7886453  T
Q  294 tctctttcat 303  Q
    || |||||||    
T  7886454 tccctttcat 7886463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 311
Target Start/End: Original strand, 38951381 - 38951497
Alignment:
Q  195 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 294  Q
    ||||| |||||||||||||||||||| ||||||| | ||||||| ||| ||| ||| || ||| |||| || ||||   || ||||||||| ||| | ||    
T  38951381 gagtgatgatacatgcacattcatagatggcatatatacttaaatctcaacacaaatatgtgatatgtggcttaaatttcacaaacactttatctttttt 38951480  T
Q  295 ctctttcatccatctct 311  Q
    | || ||||||||||||    
T  38951481 ccctatcatccatctct 38951497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 7e-43; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 195 - 311
Target Start/End: Original strand, 496683 - 496799
Alignment:
Q  195 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 294  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||  |||| |||||| ||||||||||||||||||    
T  496683 gagtggtgatacatgtacatccataggtggcatacacacttaaacctccacataaacatatgacacgtgtcctagaccccacaaacactttgtctctctt 496782  T
Q  295 ctctttcatccatctct 311  Q
    |||||||||||||||||    
T  496783 ctctttcatccatctct 496799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 194 - 311
Target Start/End: Original strand, 11765706 - 11765823
Alignment:
Q  194 tgagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctct 293  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||| ||  |||  |||||| |||||||||||||||||    
T  11765706 tgagtggtgatacatgtacatccataggtggcatacacacttaaacctccacataaacatgtgacacgtgtccttgaccccacaaacactttgtctctct 11765805  T
Q  294 tctctttcatccatctct 311  Q
    ||||||||||||||||||    
T  11765806 tctctttcatccatctct 11765823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 193 - 311
Target Start/End: Complemental strand, 7527365 - 7527247
Alignment:
Q  193 ttgagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctc 292  Q
    ||||| ||||||||||||| |||||| ||||||||||||||||||||||||||| |||||| |||||||| ||||| || |||||||||||||||||||     
T  7527365 ttgaggggtgatacatgcatattcattggtggcatacacacttaaacctccacacaaacatgtgacatgtggcctagactccataaacactttgtctctt 7527266  T
Q  293 ttctctttcatccatctct 311  Q
    || | ||||||||||||||    
T  7527265 ttttttttcatccatctct 7527247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 194 - 311
Target Start/End: Original strand, 2286457 - 2286574
Alignment:
Q  194 tgagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctct 293  Q
    ||||| ||||||||||||||   || ||||||||||||||||||||||||||| |||||| |||||||| ||||| |||||| |||||||||||||||||    
T  2286457 tgagtagtgatacatgcacacctattggtggcatacacacttaaacctccacacaaacatgtgacatgtggcctagaccccacaaacactttgtctctct 2286556  T
Q  294 tctctttcatccatctct 311  Q
    ||  ||||||||||||||    
T  2286557 tccttttcatccatctct 2286574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 195 - 311
Target Start/End: Complemental strand, 25186032 - 25185916
Alignment:
Q  195 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 294  Q
    |||||||||| |||||||| ||||||||| |||||||||||||||||||||| |||||| |||||||| ||||| |||||| ||| ||||| ||||||||    
T  25186032 gagtggtgatgcatgcacactcataggtgacatacacacttaaacctccacacaaacatgtgacatgtggcctagaccccacaaatactttatctctctt 25185933  T
Q  295 ctctttcatccatctct 311  Q
    |  ||||||||||||||    
T  25185932 ccttttcatccatctct 25185916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 195 - 311
Target Start/End: Complemental strand, 48057798 - 48057682
Alignment:
Q  195 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 294  Q
    ||||||||||||||| |||  ||||||||||||||| | |||||| ||||||||||||| ||||| ||  |||| |||||| ||||||||||||||||||    
T  48057798 gagtggtgatacatgtacacccataggtggcatacatatttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctctt 48057699  T
Q  295 ctctttcatccatctct 311  Q
    |||||||||||||||||    
T  48057698 ctctttcatccatctct 48057682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 195 - 311
Target Start/End: Complemental strand, 42535313 - 42535197
Alignment:
Q  195 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 294  Q
    ||||| ||||| ||| ||| ||||||||| ||||||||||||||||||||||||||||| ||||| ||  | || | |||| ||||||||||||||||||    
T  42535313 gagtgatgatatatgtacactcataggtgacatacacacttaaacctccacataaacatgtgacacgtgtcttatatcccacaaacactttgtctctctt 42535214  T
Q  295 ctctttcatccatctct 311  Q
    |||||||||||||||||    
T  42535213 ctctttcatccatctct 42535197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 202 - 311
Target Start/End: Original strand, 23844642 - 23844751
Alignment:
Q  202 gatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctcttctctttc 301  Q
    ||||||||||||| |||||||  |||||||||| ||| |||||||||||||| ||||||||  |||| ||| || |||||||||||||||||||  ||||    
T  23844642 gatacatgcacatccataggtaacatacacactcaaatctccacataaacatgtgacatgtgccctagacctcacaaacactttgtctctcttccttttc 23844741  T
Q  302 atccatctct 311  Q
    ||||||||||    
T  23844742 atccatctct 23844751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 194 - 311
Target Start/End: Complemental strand, 31427362 - 31427243
Alignment:
Q  194 tgagtggtgatacatgcacattcataggtg--gcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctct 291  Q
    ||||||||||||||||||||| ||||||||  ||||||| | |||||||||| |||||| || |||||||| |  || || ||| |||||||||||||||    
T  31427362 tgagtggtgatacatgcacatccataggtgtggcatacataattaaacctccgcataaatatgtgacatgtggtttagactccacaaacactttgtctct 31427263  T
Q  292 cttctctttcatccatctct 311  Q
    |||| || ||||||||||||    
T  31427262 cttccctctcatccatctct 31427243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 4649537 - 4649481
Alignment:
Q  194 tgagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaa 250  Q
    |||||||||||| ||||| ||||||| |||||||||||| ||||| |||||||||||    
T  4649537 tgagtggtgatagatgcaaattcataagtggcatacacatttaaaactccacataaa 4649481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 311
Target Start/End: Complemental strand, 40855251 - 40855134
Alignment:
Q  195 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgt-agcctaaaccccataaacactttgtctctct 293  Q
    ||||| |||| |||||| || |||| |||| ||| ||||||||||||| ||| |||||| |||| |||  | ||| ||| || ||||||||||||||| |    
T  40855251 gagtgatgatgcatgcatatccatatgtggtatatacacttaaacctctacacaaacatgtgacctgtgggtctagacctcacaaacactttgtctcttt 40855152  T
Q  294 tctctttcatccatctct 311  Q
    || ||||||| |||||||    
T  40855151 tccctttcattcatctct 40855134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 195 - 311
Target Start/End: Complemental strand, 52055247 - 52055131
Alignment:
Q  195 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||| ||||| |||||| ||||||||||||||||||    
T  52055247 gagtggtgatacatgcacattcataggtggcatacacacttaaacctctacacaaacatgtgacatgtggcctagaccccacaaacactttgtctctctt 52055148  T
Q  295 ctctttcatccatctct 311  Q
    |  ||||||||||||||    
T  52055147 ccttttcatccatctct 52055131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 195 - 311
Target Start/End: Complemental strand, 1158354 - 1158238
Alignment:
Q  195 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 294  Q
    ||||| ||||||||||||||  ||||  ||| |||||||||||||||||||| |||||| |||||||| ||||| |||| | ||||| ||||||||||||    
T  1158354 gagtgatgatacatgcacatcgatagaaggcgtacacacttaaacctccacacaaacatgtgacatgtggcctagaccctacaaacattttgtctctctt 1158255  T
Q  295 ctctttcatccatctct 311  Q
    | ||||||| |||||||    
T  1158254 ccctttcattcatctct 1158238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 216 - 311
Target Start/End: Original strand, 49866671 - 49866766
Alignment:
Q  216 cataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctcttctctttcatccatctct 311  Q
    ||||||||| |||||| ||||||||| |||| ||| || ||||||||  | || ||| ||||||||||||||||||||||||||||||| ||||||    
T  49866671 cataggtggtatacacgcttaaaccttcacacaaatatgtgacatgtgacttagaccacataaacactttgtctctcttctctttcatcgatctct 49866766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 195 - 311
Target Start/End: Original strand, 13922185 - 13922301
Alignment:
Q  195 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 294  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||| ||||| ||  |||| |||||| ||||||||||||||||||    
T  13922185 gagtggtgatacatgtacatccataggtggcatacacacttaaacctccacgtaaacatgtgacacgtgtcctagaccccacaaacactttgtctctctt 13922284  T
Q  295 ctctttcatccatctct 311  Q
    |||||||||||||||||    
T  13922285 ctctttcatccatctct 13922301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 198 - 311
Target Start/End: Original strand, 11828960 - 11829073
Alignment:
Q  198 tggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctcttctc 297  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||  |||| |||||| |||||||||| |||||| |||    
T  11828960 tggtgagacatgcacactcataggtggcatacacacttaaacctccacataaatatgtgacatgtgtcctagaccccacaaacactttgcctctctcctc 11829059  T
Q  298 tttcatccatctct 311  Q
    ||||||||||||||    
T  11829060 tttcatccatctct 11829073  T

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Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 200 - 311
Target Start/End: Complemental strand, 3780453 - 3780342
Alignment:
Q  200 gtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctcttctctt 299  Q
    |||||||||| |||| ||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| | ||||||||||||||||||| |||    
T  3780453 gtgatacatgtacatccataggtggcatacacactcaaacctccacacaaacatgtgacatgtagcctaaacccgagaaacactttgtctctcttccctt 3780354  T
Q  300 tcatccatctct 311  Q
    ||||||||||||    
T  3780353 tcatccatctct 3780342  T

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Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 195 - 311
Target Start/End: Complemental strand, 4077043 - 4076927
Alignment:
Q  195 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 294  Q
    ||||| ||||||||||| |  ||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||| ||||| ||||||||||||    
T  4077043 gagtgatgatacatgcatacccataggtggcatacacacttaaacctccacacaaacatgtgacatgtagcctagaccccacaaacaatttgtctctctt 4076944  T
Q  295 ctctttcatccatctct 311  Q
    |  ||||||||||||||    
T  4076943 ccttttcatccatctct 4076927  T

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Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 195 - 311
Target Start/End: Complemental strand, 20186940 - 20186824
Alignment:
Q  195 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 294  Q
    ||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||| ||||| ||  |||| | |||| ||||||||||||||||||    
T  20186940 gagtggtgatacatgtacacccataggtggcatacacacttaaacctccacataaacatgtgacacgtgtcctagatcccacaaacactttgtctctctt 20186841  T
Q  295 ctctttcatccatctct 311  Q
    |||||||||||||||||    
T  20186840 ctctttcatccatctct 20186824  T

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Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 195 - 311
Target Start/End: Original strand, 30339636 - 30339752
Alignment:
Q  195 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 294  Q
    ||||||||||||||| |||  ||||||||||||||||||||||||||| |||||||||| ||||| ||  |||| |||||| ||||||||||||||||||    
T  30339636 gagtggtgatacatgtacacccataggtggcatacacacttaaacctctacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctctt 30339735  T
Q  295 ctctttcatccatctct 311  Q
    |||||||||||||||||    
T  30339736 ctctttcatccatctct 30339752  T

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Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 195 - 311
Target Start/End: Original strand, 51787272 - 51787388
Alignment:
Q  195 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 294  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||| ||||| ||   ||| |||||| ||||||||||||||||||    
T  51787272 gagtggtgatacatgtacatccataggtggcatacacacttaaaccttcacataaacatgtgacacgtgctctagaccccacaaacactttgtctctctt 51787371  T
Q  295 ctctttcatccatctct 311  Q
    ||||||||| |||||||    
T  51787372 ctctttcatgcatctct 51787388  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 195 - 308
Target Start/End: Complemental strand, 43740506 - 43740393
Alignment:
Q  195 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 294  Q
    |||||||||| |||| |||| ||||| |  ||| |||||||||||||||||| |||||| ||| |||| ||||||||| || ||||||||||||||||||    
T  43740506 gagtggtgatccatgaacatccatagatcacatgcacacttaaacctccacacaaacatgtgatatgtggcctaaacctcacaaacactttgtctctctt 43740407  T
Q  295 ctctttcatccatc 308  Q
    |  | |||||||||    
T  43740406 ccttatcatccatc 43740393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 217 - 311
Target Start/End: Complemental strand, 9673046 - 9672955
Alignment:
Q  217 ataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctcttctctttcatccatctct 311  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||  |||| |  ||| ||||||  |||||||||||||||||||||||||||    
T  9673046 ataggtggcatacacacttaaacctccacataaacatgtgacacgtgtcctaga-tccacaaacac--tgtctctcttctctttcatccatctct 9672955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 194 - 311
Target Start/End: Original strand, 49786392 - 49786509
Alignment:
Q  194 tgagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctct 293  Q
    |||| ||||||||||| |||  |||||||||||||||||||||||||||||||||||||| ||||| ||  |||| |||||| |||||||||||||||||    
T  49786392 tgagcggtgatacatgtacacccataggtggcatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctct 49786491  T
Q  294 tctctttcatccatctct 311  Q
    |||||||||| |||||||    
T  49786492 tctctttcattcatctct 49786509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 189 - 311
Target Start/End: Original strand, 47940820 - 47940942
Alignment:
Q  189 aattttgagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtc 288  Q
    |||| ||||| ||||||||||||||   || ||||||||||||||||||||||||||| |||||| |||||||| ||||| |||||| ||||||||||||    
T  47940820 aattatgagtagtgatacatgcacacctattggtggcatacacacttaaacctccacacaaacatgtgacatgtggcctagaccccacaaacactttgtc 47940919  T
Q  289 tctcttctctttcatccatctct 311  Q
    |||||||  ||||||||||||||    
T  47940920 tctcttccttttcatccatctct 47940942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 195 - 311
Target Start/End: Original strand, 8152977 - 8153095
Alignment:
Q  195 gagtggtgatacat--gcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctc 292  Q
    ||||||||||||||  |||||   ||||||||||||||||| ||||||||||||||||||| |||||||| ||||| || ||| ||||||||||||||||    
T  8152977 gagtggtgatacatatgcacacctataggtggcatacacacctaaacctccacataaacatgtgacatgtggcctagactccacaaacactttgtctctc 8153076  T
Q  293 ttctctttcatccatctct 311  Q
    |||||||| ||||||||||    
T  8153077 ttctcttttatccatctct 8153095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 195 - 311
Target Start/End: Complemental strand, 8436995 - 8436879
Alignment:
Q  195 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 294  Q
    ||||||||||| ||| |||  ||||||||||||||||| ||||||||| ||||||| |||||||| ||  | || |||||| ||||||||||||||||||    
T  8436995 gagtggtgatatatgtacacccataggtggcatacacatttaaacctctacataaatatatgacacgtgtcttagaccccacaaacactttgtctctctt 8436896  T
Q  295 ctctttcatccatctct 311  Q
    |||||||||||||||||    
T  8436895 ctctttcatccatctct 8436879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 195 - 303
Target Start/End: Complemental strand, 29836868 - 29836761
Alignment:
Q  195 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 294  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| || | |||| |  |||| |||||| ||| ||||||||||||||    
T  29836868 gagtggtgatacatgcacactcataggtggcatacacacttaaacctccacacaaatatgtaacatatgacctacaccccacaaa-actttgtctctctt 29836770  T
Q  295 ctctttcat 303  Q
    |||| ||||    
T  29836769 ctctctcat 29836761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 201 - 295
Target Start/End: Complemental strand, 48779066 - 48778972
Alignment:
Q  201 tgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctcttc 295  Q
    |||||||||||||   ||||||||||||| || |||||| |||||||||| || |||||||| | ||| || ||||||||||||| |||||||||    
T  48779066 tgatacatgcacacctataggtggcatactcatttaaacatccacataaatatgtgacatgtggtctagactccataaacactttatctctcttc 48778972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 195 - 311
Target Start/End: Complemental strand, 33594618 - 33594502
Alignment:
Q  195 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 294  Q
    |||| ||||||||||||||| ||| |||||||||||||||||||||| |||| |||||| |||||||| ||||| |||||| ||| ||||||||||||||    
T  33594618 gagtagtgatacatgcacatccattggtggcatacacacttaaaccttcacacaaacatgtgacatgtggcctagaccccacaaatactttgtctctctt 33594519  T
Q  295 ctctttcatccatctct 311  Q
    |  ||||||||||||||    
T  33594518 ccttttcatccatctct 33594502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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