View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12368_high_9 (Length: 320)
Name: NF12368_high_9
Description: NF12368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12368_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 35397458 - 35397174
Alignment:
| Q |
1 |
agatgcatcagtcagaaacattttaagtttatatgtgactttttccttttctcttataccattgtcttagagtgttctaactctaagatgcaattagata |
100 |
Q |
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| T |
35397458 |
agatgcatcagtcagaaacattttaagtttatatgtgacattttccttttctcttatactattgtcttagagtgttctaactctaagatgcaattagata |
35397359 |
T |
|
| Q |
101 |
ttttcattcaatcgtgggagtgtctttcagtcggtgtgtgtttgacatagtctatgcggtgtaaaaatttacttactggtgtaattctctggctatcaca |
200 |
Q |
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|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
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| T |
35397358 |
ttttcattaaatcgtggga----------------gtgtgtttgacatagtctatgcggtgtaaaaatttacttactggtgtaattctctggctgtcata |
35397275 |
T |
|
| Q |
201 |
agataacgatcttgatttctttatcttgggtttccacgttatgttcttgtgttcctttannnnnnnnnnctctattgttttttccaacaattgatattaa |
300 |
Q |
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| T |
35397274 |
agacaacgatcgtgatttctttatcttgggtttccacgttatgttcttgtgttccttta--ttttttttctctattgttttttccaacaattgatattaa |
35397177 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 47595690 - 47595730
Alignment:
| Q |
16 |
aaacattttaagtttatatgtgactttttccttttctctta |
56 |
Q |
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| T |
47595690 |
aaacattttaagtttctatatgactttttccttttctctta |
47595730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 8539587 - 8539623
Alignment:
| Q |
12 |
tcagaaacattttaagtttatatgtgactttttcctt |
48 |
Q |
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| T |
8539587 |
tcagaaacactttaagtttatatctgactttttcctt |
8539623 |
T |
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