View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12368_low_11 (Length: 306)

Name: NF12368_low_11
Description: NF12368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12368_low_11
NF12368_low_11
[»] chr3 (13 HSPs)
chr3 (16-288)||(23448428-23448704)
chr3 (16-288)||(23500196-23500468)
chr3 (94-288)||(23405784-23405978)
chr3 (133-288)||(23455193-23455348)
chr3 (94-288)||(23464415-23464609)
chr3 (89-288)||(23441049-23441248)
chr3 (89-288)||(23473581-23473780)
chr3 (89-288)||(23353075-23353274)
chr3 (89-288)||(23387410-23387608)
chr3 (94-288)||(23479717-23479914)
chr3 (126-255)||(21087589-21087718)
chr3 (89-251)||(21086969-21087131)
chr3 (111-273)||(36003680-36003845)
[»] scaffold0570 (1 HSPs)
scaffold0570 (18-288)||(10408-10678)
[»] scaffold0201 (1 HSPs)
scaffold0201 (94-288)||(12579-12776)
[»] chr2 (1 HSPs)
chr2 (111-178)||(16122993-16123060)


Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 16 - 288
Target Start/End: Complemental strand, 23448704 - 23448428
Alignment:
Q  16 tgtgctctactcagccaccatgttgaatataaactttattatgtcctaatcatat----gaatgcatttttcttctgttgtaaaacattcttcccatctt 111  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||||||    ||||||||||||||| |||||||||||||||||||||||||    
T  23448704 tgtgctctactctgccaccatgttgaatataaattttattatgtcctaatcatatatatgaatgcatttttcttttgttgtaaaacattcttcccatctt 23448605  T
Q  112 tcatatgttaggagtgaaccagacttcattaaggacattgttgaagatgttttgcggaaactgaatcttaggcacccatatgaaattaaaggtcttcctg 211  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| || |||  ||    
T  23448604 tcatatgttaggagtgaaccagacttcattaaagacattgttgaagatgttttgcggaaactgaatattaggtacccatatgaaattaaggggcttgttg 23448505  T
Q  212 gaattgaaaagaaatatgaacaaattgaatcaatactgaaaatttggtcaaatgatgttagagtccttggaatatgg 288  Q
    ||||||| || || || ||||||||||||||||| ||||||||| |||||||||| || ||||| ||||||||||||    
T  23448504 gaattgagaaaaattacgaacaaattgaatcaatgctgaaaattgggtcaaatgaagtcagagtacttggaatatgg 23448428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 16 - 288
Target Start/End: Complemental strand, 23500468 - 23500196
Alignment:
Q  16 tgtgctctactcagccaccatgttgaatataaactttattatgtcctaatcatatgaatgcatttttcttctgttgtaaaacattcttc-ccatctttca 114  Q
    |||||||||||| ||| ||||||| |  ||||| ||| |||||  ||||||| ||  ||| ||||| |||||||||||||||||||||| || ||||||     
T  23500468 tgtgctctactctgcctccatgtttaccataaattttgttatgcactaatcacatagatgtatttt-cttctgttgtaaaacattcttcgccctctttcc 23500370  T
Q  115 tatgttaggagtgaaccagacttcattaaggacattgttgaagatgttttgcggaaactgaatcttaggcacccatatgaaattaaaggtcttcctggaa 214  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||  |||||    
T  23500369 tatgttaggagtgaaccagatttcattaaggacattgttgaagatgttttgcggaaactgaatcttagatacccatatgaaattaagggtcttgttggaa 23500270  T
Q  215 ttgaaaagaaatatgaacaaattgaatcaatactgaaaatttggtcaaatgatgttagagtccttggaatatgg 288  Q
    |||| ||||| ||| |||||||||||||||| ||||||||| ||||| |||| || ||||||||||||||||||    
T  23500269 ttgagaagaattataaacaaattgaatcaatgctgaaaattgggtcacatgaagtcagagtccttggaatatgg 23500196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 94 - 288
Target Start/End: Complemental strand, 23405978 - 23405784
Alignment:
Q  94 aaacattcttcccatctttcatatgttaggagtgaaccagacttcattaaggacattgttgaagatgttttgcggaaactgaatcttaggcacccatatg 193  Q
    |||| |||||||| |||||||||||||||||||||  ||||||||||||| | |||||||||||||||||||||||||||||||| |||  |||||||||    
T  23405978 aaaccttcttcccctctttcatatgttaggagtgactcagacttcattaaagccattgttgaagatgttttgcggaaactgaatcctagatacccatatg 23405879  T
Q  194 aaattaaaggtcttcctggaattgaaaagaaatatgaacaaattgaatcaatactgaaaatttggtcaaatgatgttagagtccttggaatatgg 288  Q
    | |||||||| |||  ||||||||| || || || |||||||||||||||||  || ||||| ||||||||||||||| | || |||||||||||    
T  23405878 acattaaagggcttgttggaattgagaaaaattacgaacaaattgaatcaatgatggaaattgggtcaaatgatgttaaaatcattggaatatgg 23405784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 133 - 288
Target Start/End: Complemental strand, 23455348 - 23455193
Alignment:
Q  133 gacttcattaaggacattgttgaagatgttttgcggaaactgaatcttaggcacccatatgaaattaaaggtcttcctggaattgaaaagaaatatgaac 232  Q
    ||||||||||||||||||||||||||||||||  ||||||| ||||||||  |||||||||||||||| ||||||  ||||||||| || || ||| |||    
T  23455348 gacttcattaaggacattgttgaagatgttttaaggaaactaaatcttagatacccatatgaaattaagggtcttgttggaattgagaaaaattataaac 23455249  T
Q  233 aaattgaatcaatactgaaaatttggtcaaatgatgttagagtccttggaatatgg 288  Q
    ||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||    
T  23455248 aaattgaatcaatgctgaaaattgggtcaaatgatgttaaagtccttggaatatgg 23455193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 94 - 288
Target Start/End: Complemental strand, 23464609 - 23464415
Alignment:
Q  94 aaacattcttcccatctttcatatgttaggagtgaaccagacttcattaaggacattgttgaagatgttttgcggaaactgaatcttaggcacccatatg 193  Q
    |||| |||||||| |||||||||||||||||||||  ||||||||||||| | |||||||||||||||||||||||||||||||| |||  |||||||||    
T  23464609 aaaccttcttcccctctttcatatgttaggagtgactcagacttcattaaagccattgttgaagatgttttgcggaaactgaatcctagatacccatatg 23464510  T
Q  194 aaattaaaggtcttcctggaattgaaaagaaatatgaacaaattgaatcaatactgaaaatttggtcaaatgatgttagagtccttggaatatgg 288  Q
    | ||||| || |||  ||||||||| || || || |||||||||||||||||  || ||||| ||||||||||||||| | || |||||||||||    
T  23464509 atattaatgggcttgttggaattgagaaaaattacgaacaaattgaatcaatgatggaaattgggtcaaatgatgttataatcattggaatatgg 23464415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 89 - 288
Target Start/End: Complemental strand, 23441248 - 23441049
Alignment:
Q  89 ttgtaaaacattcttcccatctttcatatgttaggagtgaaccagacttcattaaggacattgttgaagatgttttgcggaaactgaatcttaggcaccc 188  Q
    ||||||||  |||||||| || |||||||  |||||  ||| | ||||||||||||||||||||| || |||||||||||||||||||||||||  ||||    
T  23441248 ttgtaaaatcttcttcccctcgttcatattctaggatcgaatcggacttcattaaggacattgttaaaaatgttttgcggaaactgaatcttagataccc 23441149  T
Q  189 atatgaaattaaaggtcttcctggaattgaaaagaaatatgaacaaattgaatcaatactgaaaatttggtcaaatgatgttagagtccttggaatatgg 288  Q
    || ||||||||| || |||  |||| |||| || || ||||| |||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||    
T  23441148 atgtgaaattaaggggcttgttggagttgagaaaaattatgaccaaattgagtcaatactgaaaattggctcaaatgatgttagagtccttggaatatgg 23441049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 89 - 288
Target Start/End: Complemental strand, 23473780 - 23473581
Alignment:
Q  89 ttgtaaaacattcttcccatctttcatatgttaggagtgaaccagacttcattaaggacattgttgaagatgttttgcggaaactgaatcttaggcaccc 188  Q
    ||||||||  |||||||  ||||||||||  |||||  ||| | ||||||||||||||||||||| || |||||||||||||||||||||||||  ||||    
T  23473780 ttgtaaaatcttcttcctctctttcatattctaggatcgaatcggacttcattaaggacattgttaaatatgttttgcggaaactgaatcttagttaccc 23473681  T
Q  189 atatgaaattaaaggtcttcctggaattgaaaagaaatatgaacaaattgaatcaatactgaaaatttggtcaaatgatgttagagtccttggaatatgg 288  Q
    || ||||||||| || |||  |||| |||| || || ||||| |||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||    
T  23473680 atgtgaaattaaggggcttgttggagttgagaaaaattatgaccaaattgagtcaatactgaaaattggctcaaatgatgttagagtccttggaatatgg 23473581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 89 - 288
Target Start/End: Complemental strand, 23353274 - 23353075
Alignment:
Q  89 ttgtaaaacattcttcccatctttcatatgttaggagtgaaccagacttcattaaggacattgttgaagatgttttgcggaaactgaatcttaggcaccc 188  Q
    ||||||| | |||||| | ||||||  ||| ||||| |||| | ||||| |||||||||||||||||||||||||||| |||||| ||||||||  ||||    
T  23353274 ttgtaaatccttcttctcctctttcgcatgctaggattgaatcggactttattaaggacattgttgaagatgttttgcagaaactaaatcttagataccc 23353175  T
Q  189 atatgaaattaaaggtcttcctggaattgaaaagaaatatgaacaaattgaatcaatactgaaaatttggtcaaatgatgttagagtccttggaatatgg 288  Q
    |||||||||||| || |||  |||| |||| || || ||||| ||||||||||||||||||||||||  ||||||||||||| || ||||||||||||||    
T  23353174 atatgaaattaaggggcttgttggagttgagaaaaattatgaccaaattgaatcaatactgaaaattgagtcaaatgatgttggaatccttggaatatgg 23353075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 89 - 288
Target Start/End: Complemental strand, 23387608 - 23387410
Alignment:
Q  89 ttgtaaaacattcttcccatctttcatatgttaggagtgaaccagacttcattaaggacattgttgaagatgttttgcggaaactgaatcttaggcaccc 188  Q
    ||||||||| |||||||| |||||||||||  || | |||| ||||||||||||||||||||||  ||||||| |||| ||| |||||||||||  ||||    
T  23387608 ttgtaaaaccttcttcccttctttcatatgc-agcactgaatcagacttcattaaggacattgtcaaagatgtcttgcagaagctgaatcttagataccc 23387510  T
Q  189 atatgaaattaaaggtcttcctggaattgaaaagaaatatgaacaaattgaatcaatactgaaaatttggtcaaatgatgttagagtccttggaatatgg 288  Q
    |||||||||||| ||  ||  ||||||||| || |  ||||| || ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  23387509 atatgaaattaaggggattgttggaattgagaaaacttatgagcagattgattcaatgctgaaaatttggtcaaatgatgtcagagtccttggaatatgg 23387410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 94 - 288
Target Start/End: Complemental strand, 23479914 - 23479717
Alignment:
Q  94 aaacattcttcccatctttcatatgttaggagtgaaccagacttcattaaggacattgttgaagatgttttgcggaaactgaatcttaggcacccatatg 193  Q
    |||| |||||||| |||||| |||| ||||| |||| ||  |||||||||||| || |||||||||||||||| ||||||||||||||   |||||||||    
T  23479914 aaaccttcttcccctctttcgtatgctaggactgaatcacgcttcattaaggatatcgttgaagatgttttgcagaaactgaatcttaaatacccatatg 23479815  T
Q  194 aaattaa---aggtcttcctggaattgaaaagaaatatgaacaaattgaatcaatactgaaaatttggtcaaatgatgttagagtccttggaatatgg 288  Q
    |||||||    || |||  ||||||||| || || ||||| |||||||||||||  ||||||||| ||||| |||| || ||||||||||||||||||    
T  23479814 aaattaaggccgggcttgttggaattgagaaaaattatgaccaaattgaatcaaagctgaaaattgggtcacatgaagtcagagtccttggaatatgg 23479717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 126 - 255
Target Start/End: Complemental strand, 21087718 - 21087589
Alignment:
Q  126 tgaaccagacttcattaaggacattgttgaagatgttttgcggaaactgaatcttaggcacccatatgaaattaaaggtcttcctggaattgaaaagaaa 225  Q
    |||| |||||||||||| | ||||||| ||||||||||||| |||||||||||||||    | |||||||||||| || |||  |||| |||| || ||     
T  21087718 tgaatcagacttcattatgaacattgtcgaagatgttttgcagaaactgaatcttagatggcaatatgaaattaaggggcttgttggagttgagaaaaat 21087619  T
Q  226 tatgaacaaattgaatcaatactgaaaatt 255  Q
    || |||||| ||||| |||||||| |||||    
T  21087618 tacgaacaatttgaaccaatactggaaatt 21087589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 251
Target Start/End: Complemental strand, 21087131 - 21086969
Alignment:
Q  89 ttgtaaaacattcttcccatctttcatatgttaggagtgaaccagacttcattaaggacattgttgaagatgttttgcggaaactgaatcttaggcaccc 188  Q
    ||||||||| ||||| || || |||||||| ||||| |||| |||||||| | ||| | | |||  |||||||||||| |||||||||  |||| | ||     
T  21087131 ttgtaaaaccttcttaccctccttcatatgataggactgaatcagacttcgtcaagtaaactgtcaaagatgttttgcagaaactgaactttagacccca 21087032  T
Q  189 atatgaaattaaaggtcttcctggaattgaaaagaaatatgaacaaattgaatcaatactgaa 251  Q
    |||||||||||| || |||  |||||| || || |  | | ||||||||||||||||||||||    
T  21087031 atatgaaattaaggggcttgttggaatagagaacagttgtaaacaaattgaatcaatactgaa 21086969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 111 - 273
Target Start/End: Complemental strand, 36003845 - 36003680
Alignment:
Q  111 ttcatatgttaggagtgaaccagacttcattaaggacattgttgaagatgttttgcggaaactgaatcttaggcacccatatgaaattaa-agg--tctt 207  Q
    |||||||| ||||| |||| || | ||||||||||||||||||||||||||||||   ||| ||||||  ||  |||||| |||| |||| | |   |||    
T  36003845 ttcatatggtaggattgaatcaaatttcattaaggacattgttgaagatgttttgaaaaaattgaatcggagatacccatttgaagttaatatgcaactt 36003746  T
Q  208 cctggaattgaaaagaaatatgaacaaattgaatcaatactgaaaatttggtcaaatgatgttaga 273  Q
      ||||||||| || || |||||| | | ||||||| |||||||||||| ||||||||||||||||    
T  36003745 gttggaattgagaaaaagtatgaagagactgaatcattactgaaaattttgtcaaatgatgttaga 36003680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 10408 - 10678
Alignment:
Q  18 tgctctactcagccaccatgttgaatataaactttattatgtcctaatcatatgaatgcatttttcttctgttgtaaaacattcttccca-tctttcata 116  Q
    |||| ||||| |||||||||||   |||||| ||| || ||| ||||||||||| ||| |||||||||||||||||||  |||||||||  |||||| ||    
T  10408 tgctatactctgccaccatgtttt-tataaattttgttttgtgctaatcatatgcatgtatttttcttctgttgtaaacaattcttccccctctttccta 10506  T
Q  117 tgttaggagtgaaccagacttcattaaggacattgttgaagatgttttgcggaaactgaatcttaggcacccatatgaaattaaaggtcttcctggaatt 216  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||  |||||||    
T  10507 tgttaggagtgaaccagatttcattaaggacattgttgaagatgttttgcggaaactgaatcttagatacccatatgaaattaagggtcttgttggaatt 10606  T
Q  217 gaaaagaaatatgaacaaattgaatcaatactgaaaatttggtcaaatgatgttagagtccttggaatatgg 288  Q
     | ||||| ||| |||||||||||||||| ||||||||| ||||| |||| || ||||||||||||||||||    
T  10607 cagaagaattataaacaaattgaatcaatgctgaaaattgggtcacatgaagtcagagtccttggaatatgg 10678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 94 - 288
Target Start/End: Complemental strand, 12776 - 12579
Alignment:
Q  94 aaacattcttcccatctttcatatgttaggagtgaaccagacttcattaaggacattgttgaagatgttttgcggaaactgaatcttaggcacccatatg 193  Q
    |||| |||||||| |||||| |||| ||||| |||| ||  |||||||||||| ||||||||||||||||||||||||||||||||||   |||||||||    
T  12776 aaaccttcttcccctctttcgtatgctaggactgaatcacgcttcattaaggatattgttgaagatgttttgcggaaactgaatcttaaatacccatatg 12677  T
Q  194 aaattaa---aggtcttcctggaattgaaaagaaatatgaacaaattgaatcaatactgaaaatttggtcaaatgatgttagagtccttggaatatgg 288  Q
    |||||||    || |||  |||| |||| || || ||||| |||||||||||||   | |||||| ||||||||||||||||||||||||||||||||    
T  12676 aaattaaggccgggcttgttggagttgagaaaaattatgaccaaattgaatcaaagtttaaaattgggtcaaatgatgttagagtccttggaatatgg 12579  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 178
Target Start/End: Complemental strand, 16123060 - 16122993
Alignment:
Q  111 ttcatatgttaggagtgaaccagacttcattaaggacattgttgaagatgttttgcggaaactgaatc 178  Q
    |||||||||||||| |||| ||||||||||||||||||| ||| |||||||||||   ||||||||||    
T  16123060 ttcatatgttaggattgaatcagacttcattaaggacatcgttaaagatgttttggaaaaactgaatc 16122993  T

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