View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12368_low_13 (Length: 258)
Name: NF12368_low_13
Description: NF12368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12368_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 24 - 253
Target Start/End: Complemental strand, 39581818 - 39581591
Alignment:
| Q |
24 |
cttcaaagaacaaatggctatcatcatcatcagcttctatctttcannnnnnncctttgttcttgctctttcataaacccaaatcacacaaaaactcact |
123 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39581818 |
cttcaaagaacaaatggctatcaccatcatcagcttctatctttcatttttttcctttgttcttgctctttcataaacccaaatcacacaaaaactcact |
39581719 |
T |
|
| Q |
124 |
tctccttcttctacctcctactcacatcaactattttatattctatgatnnnnnnnnccccaaattccctcttcatcttctcaatcatcatcacacataa |
223 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
39581718 |
tctccttcttctacctcttactcacatcaactattttatattctatgataaaaaatt--ctaaattccctcttcatcttctcaatcatcatcacacataa |
39581621 |
T |
|
| Q |
224 |
caaccagcattccttcactcttcttctctc |
253 |
Q |
| |
|
|| ||||||||||||||||||||||||||| |
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|
| T |
39581620 |
cagccagcattccttcactcttcttctctc |
39581591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 20 - 253
Target Start/End: Original strand, 34387109 - 34387345
Alignment:
| Q |
20 |
agagcttcaaagaacaaatggctatcatcatcatcagcttctatctttcannnnnnn--cctttgttcttgctctttcataaacccaaatcacacaaaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34387109 |
agagcttcaaagaacaaatggctatcatcatcatcagcttctatctttcatttttttttcctttgttcttgctctttcataaacccaaatcacacaaaaa |
34387208 |
T |
|
| Q |
118 |
ctcacttctccttcttctacctcctactcacatcaactattttatattctatgatnnnnnnnnccccaaa-ttccctcttcatcttctcaatcatcatca |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||| |||||||||||||||||| |||||| |
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| T |
34387209 |
ctcacttctccttcttctacctcctactcacatcaactattttatattctatgataaaaaaaaccttaaatttctctcttcatcttctcaatcgtcatca |
34387308 |
T |
|
| Q |
217 |
cacataacaaccagcattccttcactcttcttctctc |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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|
| T |
34387309 |
cacataacaaccagcattccttcactcttcttctctc |
34387345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 20 - 253
Target Start/End: Original strand, 31182934 - 31183168
Alignment:
| Q |
20 |
agagcttcaaagaacaaatggctatcatcatcatcagcttctatctttcannnnnnn-cctttgttcttgctctttcataaacccaaatcacacaaaaac |
118 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
31182934 |
agagcttcaaaaaacaaatggctatcatcatcatcaacttctatctttcattttttttcctttgttcttgctctttcataaacccaaatcacacaaaaac |
31183033 |
T |
|
| Q |
119 |
tcacttctccttcttctacctcctactcacatcaactattttatattctatgatnnnnnnnnccccaaattccctcttcatcttctcaatcatcatcaca |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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|
| T |
31183034 |
tcacttctccttcttctacctcctactcacatcaactatttcatattctatgataaaaaaaatcccgaattccctcttcatcttctcaatcatcatcaca |
31183133 |
T |
|
| Q |
219 |
cataacaaccagcattccttcactcttcttctctc |
253 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |
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|
| T |
31183134 |
cataacagacagcattccttcactcttcttctctc |
31183168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 134; Significance: 8e-70; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 20 - 253
Target Start/End: Complemental strand, 7314064 - 7313831
Alignment:
| Q |
20 |
agagcttcaaagaacaaatggctatcatcatcatcagcttctatctttcannnnnnnccttt-gttcttgctctttcataaacccaaatcacacaaaaac |
118 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||| ||||||||| |||| ||||||||||||||||||| ||||||||||||||||| |
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|
| T |
7314064 |
agagcttcaaagtacaaatggttatcatcatcatcagcttttatctttcattttttttcttttgttcttgctctttcataaatccaaatcacacaaaaac |
7313965 |
T |
|
| Q |
119 |
tcacttctccttcttctacctcctactcacatcaactattttatattctatgatnnnnnnnnccccaaattccctcttcatcttctcaatcatcatcaca |
218 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
7313964 |
tcgcttctccttcttctacctcctactcacatcaactattttatatcctatgatgaaaaaaa-cccaaattccctcttcatcttctcaatcatcatcaca |
7313866 |
T |
|
| Q |
219 |
cataacaaccagcattccttcactcttcttctctc |
253 |
Q |
| |
|
||||||| || ||||||||||||||||||||||| |
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|
| T |
7313865 |
cataacagtcaacattccttcactcttcttctctc |
7313831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 47508306 - 47508262
Alignment:
| Q |
181 |
ccccaaattccctcttcatcttctcaatcatcatcacacataaca |
225 |
Q |
| |
|
||||||||||| |||| ||||| ||||||||||||||||| |||| |
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|
| T |
47508306 |
ccccaaattccatcttaatcttatcaatcatcatcacacaaaaca |
47508262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 77 - 254
Target Start/End: Complemental strand, 29183264 - 29183084
Alignment:
| Q |
77 |
cctttgttcttgctctttcataaacccaaa-tcacacaaaaactcacttctccttcttctacctcctactcaca--tcaactattttatattctatgatn |
173 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||| || || |
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| T |
29183264 |
cctttgttcttgctctttcataaacccaaaatcacatcaaaactcacttttccttcttctacatcctactcacatctcaactattttatattccataata |
29183165 |
T |
|
| Q |
174 |
nnnnnnnccccaaattccctcttcatcttctcaatcatcatcacacataacaaccagcattccttcactcttcttctctct |
254 |
Q |
| |
|
| |||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
29183164 |
taaaaaaactcaaatttcctcttcatcttctcgatcatcatcacacataacaaccataattccttcactcttcttctctct |
29183084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 127 - 253
Target Start/End: Original strand, 52143491 - 52143615
Alignment:
| Q |
127 |
ccttcttctacctcctactcacatcaactattttatattctatgatnnnnnnnnccccaaattccctcttcatcttctcaatcatcatcacacataacaa |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
52143491 |
ccttcttctacctcctactcacatcaactattttatattctatgataaaaaa--ccccaaattccctcttcatcttctcaatcataatcacacataacaa |
52143588 |
T |
|
| Q |
227 |
ccagcattccttcactcttcttctctc |
253 |
Q |
| |
|
| ||||||||||||||||||||||||| |
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|
| T |
52143589 |
ctagcattccttcactcttcttctctc |
52143615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 52143110 - 52143159
Alignment:
| Q |
20 |
agagcttcaaagaacaaatggctatcatcatcatcagcttctatctttca |
69 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
52143110 |
agagcttcaaagaacaaatggctattatcatcatcagcttctatctttca |
52143159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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