View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12368_low_18 (Length: 237)
Name: NF12368_low_18
Description: NF12368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12368_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 41557937 - 41557736
Alignment:
| Q |
19 |
gtttccttgcaaagtgttagaacttcctttccaaccggcaaatcggagccacagaagctgtaaagaacatagaaattaaacaaaaatgatgattgcgata |
118 |
Q |
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| T |
41557937 |
gtttccttgcaaagtgttagaacttcctttccaaccggcaaatcggagccacagaagctgtgaagaacatagaaattaaacaaaaatgatgattgcgata |
41557838 |
T |
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| Q |
119 |
aatgatgaatgtgagatttgagataagaatggaacgaaccagttggaatctgaaagagtacagtgatttttgaatcgatcgatgaggatgatcggtgatt |
218 |
Q |
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| T |
41557837 |
aatgatgaatgtgagatttgagataagaatggaacgaaccagttggaatctgaaagagtacagtgatttttgaatcgatcgatgaggatgatcggtgatt |
41557738 |
T |
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| Q |
219 |
tt |
220 |
Q |
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| T |
41557737 |
tt |
41557736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 17 - 212
Target Start/End: Complemental strand, 41542175 - 41541988
Alignment:
| Q |
17 |
gtgtttccttgcaaagtgttagaacttcctttccaaccggcaaatcggagccacagaagctgtaaagaacatagaaattaaacaaaaatgatgattgcga |
116 |
Q |
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|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
41542175 |
gtgtttccttgcaaagtgttagaacttcatttccgaccggcaaatcggagccacagaagctgtgaagaacatagaaattaaacaaaaatgatgattacga |
41542076 |
T |
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| Q |
117 |
taaatgatgaatgtgagatttgagataagaatggaacgaaccagttggaatctgaaagagtacagtgatttttgaatcgatcgatgaggatgatcg |
212 |
Q |
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| T |
41542075 |
caaatcat--------gatttgagattagaagagaacgaaccagttggaatctgaaagagtacagtgatttctgaatcgattgatgagaatgatcg |
41541988 |
T |
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