View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12368_low_3 (Length: 507)
Name: NF12368_low_3
Description: NF12368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12368_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 20 - 501
Target Start/End: Complemental strand, 1629415 - 1628931
Alignment:
| Q |
20 |
ttcatcaacagcaaacagggtgaaatggcctggttatcatgtgataacaaacccaaaggaagcatcaaagtttacggttactggactccttgctggacca |
119 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1629415 |
ttcatcaacagcaaatagggtgaaatggcctggttatcatgtgatatcaaacccaaaggaagcatcaaagtttacggttgctggactccttgctggacca |
1629316 |
T |
|
| Q |
120 |
acatggttggctacaactactgtgccatttacatctggtctttgatcatttgttttatggtatagctatatctcttcattaagtcaattattctacatag |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1629315 |
acatggttggctacaactactgtgccatttacatctggtctttgatcatttgtattttggtatagctatatctcttcattaattcaattattctacatag |
1629216 |
T |
|
| Q |
220 |
ttatctgtaattaaattcattgtaattctaaaaagaaaatgtgtcaatattctttaatttgtatattgagagagat---attattcatattctttaattt |
316 |
Q |
| |
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|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1629215 |
ttatttgtaattaaattcattgtaattcttaaaagaaaatgtgtcaatattctttaatttgtatattgagagagatataattattcatattctttaattt |
1629116 |
T |
|
| Q |
317 |
tgtactacttaacaagttcaactttgatgatccgacggatctatgtttaaaaagtcaatatgtcagaaactaagtaacaaataagcatcctgtcctttaa |
416 |
Q |
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|||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| | |
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| T |
1629115 |
tgtactactttacaagttcaactttgatgatccagcggatctatgtttaaaaagtcaatatgtcagaaactaagtaacaaataagcatcttgtcatttta |
1629016 |
T |
|
| Q |
417 |
aaaatatatataaaattaagtcctatgcgcgaggtgcatgaggccatgcatcgcctttggcagttgctcatctccttgatctctc |
501 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
1629015 |
aaaatatatataaaattaagtcctatgcgcgaggtgcatgaggccatgcatcgcctgtggcagttgctcatctccttgatctctc |
1628931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 20 - 248
Target Start/End: Complemental strand, 1606117 - 1605891
Alignment:
| Q |
20 |
ttcatcaacagcaaacagggtgaaatggcctggttatcatgtgataacaaacccaaaggaagcatcaaagtttacggttactggactccttgctggacca |
119 |
Q |
| |
|
||||||||||||||| || || |||||||||||||||||||||||| ||||||| || ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1606117 |
ttcatcaacagcaaatagagtaaaatggcctggttatcatgtgatatcaaaccctaatgaagcatcaaagtttacggttgctggactccttgctggacca |
1606018 |
T |
|
| Q |
120 |
acatggttggctacaactactgtgccatttacatctggtctttgatcatttgttttatggtatagctatatctcttcattaagtcaattattctacatag |
219 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | || || |||||| ||| |||||||| ||| ||||| ||| || |
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| T |
1606017 |
acatggttggctacaactactgtgccatttacatctggtctttgatcatttatgttgtgctatagc--tatttcttcattgcctcagttattgtacttaa |
1605920 |
T |
|
| Q |
220 |
ttatctgtaattaaattcattgtaattct |
248 |
Q |
| |
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|| | ||||||||| |||||||||||||| |
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| T |
1605919 |
ttctttgtaattaagttcattgtaattct |
1605891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 20 - 172
Target Start/End: Original strand, 10821283 - 10821435
Alignment:
| Q |
20 |
ttcatcaacagcaaacagggtgaaatggcctggttatcatgtgataacaaacccaaaggaagcatcaaagtttacggttactggactccttgctggacca |
119 |
Q |
| |
|
|||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
10821283 |
ttcatcaacaacaaacagggtaaattggcctggttatcatgtgataacaaacccaaaggaagcatcaaagtttacggttgctggactccttgctggtcca |
10821382 |
T |
|
| Q |
120 |
acatggttggctacaactactgtgccatttacatctggtctttgatcatttgt |
172 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
10821383 |
acatggttggctaaaactactgtgccatttacatctggtctttgatcatttgt |
10821435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 1623239 - 1623071
Alignment:
| Q |
20 |
ttcatcaacagcaaacagggtgaaatggcctggttatcatgtgataacaaacccaaaggaagcatcaaagtttacggttactggactccttgctggacca |
119 |
Q |
| |
|
|||||||||| |||| || || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1623239 |
ttcatcaacaacaaatagagtaaaatggcctggttatcatgtgataacaaaccgaaaggaagcatcaaagtttacggttgctggactccttgctggacca |
1623140 |
T |
|
| Q |
120 |
acatggttggctacaactactgtgccatttacatctggtctttgatcatttgttttatggtatagctat |
188 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| | || || ||||||||| |
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| T |
1623139 |
acatggttggctacaactaccgtgccatttacatctggtctttgatcatttatgttgtgctatagctat |
1623071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 225 - 501
Target Start/End: Original strand, 10821438 - 10821709
Alignment:
| Q |
225 |
tgtaattaaattcattgtaattctaaaaagaaaatgtgtcaatattctttaatttgtatattgagagaga---tattattcatattctttaattttgtac |
321 |
Q |
| |
|
|||||||||||||||||||||| | ||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
10821438 |
tgtaattaaattcattgtaatttttgtaagaacatgagtcaatattctttaatttgtatattgagagagatattattattcatattc-----ctttgtac |
10821532 |
T |
|
| Q |
322 |
tacttaacaagttcaactttgatgatccgacggatctatgtttaaaaagtcaatatgtcagaaactaagtaacaaataagcatcctgtcctttaaaaaat |
421 |
Q |
| |
|
|||| ||||||||| |||||||||| | || ||| |||||||||||||||||||| ||| |||||| |||||||||||| ||| ||| ||| ||||| |
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| T |
10821533 |
aactttacaagttcacctttgatgattcaactgatatatgtttaaaaagtcaatatatcataaactatgtaacaaataagaatcttgtaattttaaaaa- |
10821631 |
T |
|
| Q |
422 |
atatataaaattaagtcctatgcgcgaggtgcatgaggccatgcatcgcctttggcagttgctcatctccttgatctctc |
501 |
Q |
| |
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| | ||| || ||||||||||||||||| |||||||||||||| |||| || |||||||||||||||||||| |||| |
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| T |
10821632 |
aaaaatagaa--aagtcctatgcgcgaggcgcatgaggccatgcgtcgcgcgtgacagttgctcatctccttgatatctc |
10821709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 126; Significance: 9e-65; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 20 - 248
Target Start/End: Complemental strand, 18780933 - 18780707
Alignment:
| Q |
20 |
ttcatcaacagcaaacagggtgaaatggcctggttatcatgtgataacaaacccaaaggaagcatcaaagtttacggttactggactccttgctggacca |
119 |
Q |
| |
|
||||||||||||||| || || ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||| || |||||||| |
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|
| T |
18780933 |
ttcatcaacagcaaatagagtaaaatggcctggttatcatgcgataacaaaccctaaggaagcatcaaagtttacggttgctggactcattactggacca |
18780834 |
T |
|
| Q |
120 |
acatggttggctacaactactgtgccatttacatctggtctttgatcatttgttttatggtatagctatatctcttcattaagtcaattattctacatag |
219 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||| ||| | || || |||||| ||| |||||||| ||||||||| ||| || |
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| T |
18780833 |
acatggctggctacaactactgtgccatttacatctggtctttgatcttttatgttgtgctatagc--tatttcttcattgcttcaattattgtacttaa |
18780736 |
T |
|
| Q |
220 |
ttatctgtaattaaattcattgtaattct |
248 |
Q |
| |
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|| | |||||||||||||||||||||||| |
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|
| T |
18780735 |
ttctttgtaattaaattcattgtaattct |
18780707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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