View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12369_low_1 (Length: 512)

Name: NF12369_low_1
Description: NF12369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12369_low_1
NF12369_low_1
[»] chr1 (17 HSPs)
chr1 (259-497)||(8136513-8136749)
chr1 (265-496)||(7671645-7671874)
chr1 (18-77)||(19985634-19985692)
chr1 (30-77)||(36814276-36814323)
chr1 (190-240)||(8135983-8136033)
chr1 (30-77)||(11672422-11672469)
chr1 (26-77)||(19984892-19984942)
chr1 (30-77)||(3448824-3448871)
chr1 (30-77)||(29292827-29292874)
chr1 (30-77)||(36817422-36817469)
chr1 (15-77)||(10833638-10833700)
chr1 (30-77)||(4032952-4032997)
chr1 (16-77)||(19983409-19983471)
chr1 (30-77)||(10163030-10163077)
chr1 (30-77)||(35238775-35238822)
chr1 (30-64)||(13993538-13993572)
chr1 (17-77)||(11670800-11670860)
[»] chr8 (6 HSPs)
chr8 (15-80)||(39546835-39546900)
chr8 (25-77)||(7302820-7302872)
chr8 (30-77)||(7305360-7305407)
chr8 (15-67)||(13012874-13012926)
chr8 (35-74)||(13014589-13014628)
chr8 (35-77)||(26228750-26228792)
[»] chr2 (7 HSPs)
chr2 (16-77)||(29171317-29171378)
chr2 (30-77)||(9924464-9924511)
chr2 (30-77)||(14389942-14389989)
chr2 (30-77)||(14391728-14391775)
chr2 (17-67)||(5813234-5813284)
chr2 (30-76)||(41973851-41973897)
chr2 (30-58)||(17323322-17323350)
[»] chr3 (4 HSPs)
chr3 (25-77)||(34618714-34618766)
chr3 (15-77)||(3956683-3956745)
chr3 (30-64)||(3964915-3964949)
chr3 (25-58)||(38390514-38390547)
[»] chr7 (8 HSPs)
chr7 (30-77)||(26199122-26199169)
chr7 (30-77)||(41397539-41397586)
chr7 (30-91)||(48013456-48013518)
chr7 (30-77)||(22130345-22130392)
chr7 (30-77)||(40500714-40500761)
chr7 (30-81)||(30879299-30879350)
chr7 (30-77)||(40496552-40496599)
chr7 (30-73)||(48015167-48015210)
[»] chr5 (8 HSPs)
chr5 (30-77)||(11664527-11664574)
chr5 (15-77)||(90643-90705)
chr5 (25-76)||(2980568-2980617)
chr5 (30-77)||(13860301-13860348)
chr5 (30-77)||(13858057-13858104)
chr5 (31-77)||(27366115-27366161)
chr5 (30-72)||(36070671-36070713)
chr5 (15-77)||(40880437-40880499)
[»] chr6 (4 HSPs)
chr6 (15-77)||(7300536-7300598)
chr6 (30-77)||(1520261-1520308)
chr6 (30-77)||(2512549-2512596)
chr6 (43-77)||(35026018-35026052)
[»] chr4 (7 HSPs)
chr4 (15-77)||(4044694-4044756)
chr4 (30-77)||(3071166-3071213)
chr4 (30-77)||(42181105-42181152)
chr4 (17-77)||(32011212-32011270)
chr4 (32-77)||(42431018-42431063)
chr4 (30-77)||(40604142-40604189)
chr4 (17-70)||(22497712-22497765)


Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 259 - 497
Target Start/End: Original strand, 8136513 - 8136749
Alignment:
Q  259 tcatgatgatggtgtaatatcattatggcattgtccctgaaatgctttatagggatagtcaacttcacttggaacactgccagcgtgttgctctctttca 358  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||    
T  8136513 tcatgctgatggtgtaatatcattatgacattgtccctgaaatgctttatagggatagtcaacttcacttggaacaccgccaacgtgttgctctgtttca 8136612  T
Q  359 aatttaatagcactaaaaacagaaccattcttacaccccttgcttcccatatcacacaatcaactagatgttgagctgaaagtgagatcaaattaccttt 458  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| |    
T  8136613 aatttaatagcactaaaaacagaaccattcttacaccccttgcttcccatat--cacaatcaactagatgttgagctgaaagtgagatcaaattacctgt 8136710  T
Q  459 tcttatctgccacaagccttctagagttgccatagtagt 497  Q
    |||||||||||||||||||||||||||||||||||||||    
T  8136711 tcttatctgccacaagccttctagagttgccatagtagt 8136749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 265 - 496
Target Start/End: Complemental strand, 7671874 - 7671645
Alignment:
Q  265 tgatggtgtaatatcattatggcattgtccctgaaatgctttatagggatagtcaacttcacttggaacactgccagcgtgttgctctctttcaaattta 364  Q
    ||||||| ||||||||||  |||||||| |||||| | ||||||| ||||||||||  ||||||||||||| ||| | |||||||||| ||||||| |||    
T  7671874 tgatggtataatatcattgcggcattgttcctgaactcctttatatggatagtcaaaatcacttggaacaccgcccgagtgttgctctgtttcaaaatta 7671775  T
Q  365 atagcactaaaaacagaaccattcttacaccccttgcttcccatatcacacaatcaactagatgttgagctgaaagtgagatcaaattaccttttcttat 464  Q
    |||||||| |||| |   |||  || |||||| ||||||||  |    ||||||| || || |||||||||||||| |||||||| || ||  |||||||    
T  7671774 atagcacttaaaatatggccaccctcacacccgttgcttcc--tgggtcacaatctacgaggtgttgagctgaaagcgagatcaagttgccagttcttat 7671677  T
Q  465 ctgccacaagccttctagagttgccatagtag 496  Q
    || ||||||||||||||||| |||||||||||    
T  7671676 cttccacaagccttctagagctgccatagtag 7671645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 19985634 - 19985692
Alignment:
Q  18 gtgttgtaaaatatatttaatatagacattatttaccaattgttagagatcttaaaataa 77  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  19985634 gtgttgaaaaatatatttaatatagacatta-ttaccaattgttagagatcttaaaataa 19985692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 36814323 - 36814276
Alignment:
Q  30 atatttaatatagacattatttaccaattgttagagatcttaaaataa 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  36814323 atatttaatatagacattatttaccaattgttagagatcttaaaataa 36814276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 8135983 - 8136033
Alignment:
Q  190 tgaaatgaggacattgttgctcaataactaaaaacaaccaattgtaaatag 240  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  8135983 tgaaatgaggacattgttgctcgataactaaaaacaaccaattgtaaatag 8136033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 11672422 - 11672469
Alignment:
Q  30 atatttaatatagacattatttaccaattgttagagatcttaaaataa 77  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||    
T  11672422 atatttcatatagacattatttaccaattgttagagatcttaaaataa 11672469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 19984892 - 19984942
Alignment:
Q  26 aaatatatttaatatagacattatttaccaattgttagagatcttaaaataa 77  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  19984892 aaatatatttaatatagacattatt-accaattgttagagatcttaaaataa 19984942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 3448824 - 3448871
Alignment:
Q  30 atatttaatatagacattatttaccaattgttagagatcttaaaataa 77  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||    
T  3448824 atatttaatatagatattatttaccaattgttagatatcttaaaataa 3448871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 29292874 - 29292827
Alignment:
Q  30 atatttaatatagacattatttaccaattgttagagatcttaaaataa 77  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||    
T  29292874 atatttaatatagaaattatttaccaattgttagagatcataaaataa 29292827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 36817469 - 36817422
Alignment:
Q  30 atatttaatatagacattatttaccaattgttagagatcttaaaataa 77  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  36817469 atatttaatgtagacattatttaccgattgttagagatcttaaaataa 36817422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 10833700 - 10833638
Alignment:
Q  15 tgtgtgttgtaaaatatatttaatatagacattatttaccaattgttagagatcttaaaataa 77  Q
    ||||||||| |||  |||||||||||| |||||||||| ||||||||||| ||||||||||||    
T  10833700 tgtgtgttgaaaataatatttaatataaacattatttatcaattgttagaaatcttaaaataa 10833638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 4032952 - 4032997
Alignment:
Q  30 atatttaatatagacattatttaccaattgttagagatcttaaaataa 77  Q
    ||||||||||||  |||||||||||||||||||||| |||||||||||    
T  4032952 atatttaatata--cattatttaccaattgttagaggtcttaaaataa 4032997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 19983409 - 19983471
Alignment:
Q  16 gtgtgttgtaaaatatatttaatatagacattatttaccaattgtt--agagatcttaaaataa 77  Q
    |||||||| |||  ||||||||||||||||||| ||||||||||||  ||||||||||||||||    
T  19983409 gtgtgttgaaaataatatttaatatagacatta-ttaccaattgttagagagatcttaaaataa 19983471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 10163077 - 10163030
Alignment:
Q  30 atatttaatatagacattatttaccaattgttagagatcttaaaataa 77  Q
    |||||||||||| |||||||| |||||| |||||| ||||||||||||    
T  10163077 atatttaatataaacattattcaccaatagttagaaatcttaaaataa 10163030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 35238775 - 35238822
Alignment:
Q  30 atatttaatatagacattatttaccaattgttagagatcttaaaataa 77  Q
    ||||||||| ||||||||||||| ||||||||||||| | ||||||||    
T  35238775 atatttaatgtagacattatttatcaattgttagagaccataaaataa 35238822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 30 - 64
Target Start/End: Original strand, 13993538 - 13993572
Alignment:
Q  30 atatttaatatagacattatttaccaattgttaga 64  Q
    |||||||||||| ||||||||||||||||||||||    
T  13993538 atatttaatatatacattatttaccaattgttaga 13993572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 11670800 - 11670860
Alignment:
Q  17 tgtgttgtaaaatatatttaatatagacattatttaccaattgttagagatcttaaaataa 77  Q
    ||||||| |||  |||||| ||||| |||||||||| |||||| || ||||||||||||||    
T  11670800 tgtgttgaaaataatatttcatataaacattatttatcaattgctatagatcttaaaataa 11670860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 9e-22; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 39546900 - 39546835
Alignment:
Q  15 tgtgtgttgtaaaatatatttaatatagacattatttaccaattgttagagatcttaaaataataa 80  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  39546900 tgtgtgttgaaaaatatatttaatatagacattatttactaattggtagagatcttaaaataataa 39546835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 7302820 - 7302872
Alignment:
Q  25 aaaatatatttaatatagacattatttaccaattgttagagatcttaaaataa 77  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  7302820 aaaatatatttaatatagatattatttaccaattgttagagatcataaaataa 7302872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 7305360 - 7305407
Alignment:
Q  30 atatttaatatagacattatttaccaattgttagagatcttaaaataa 77  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7305360 atatttaatatagacattatttaccaattgttagagatcataaaataa 7305407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 13012874 - 13012926
Alignment:
Q  15 tgtgtgttgtaaaatatatttaatatagacattatttaccaattgttagagat 67  Q
    ||||||||| |||  ||||||||||||||||||||||| ||||||||||||||    
T  13012874 tgtgtgttgaaaataatatttaatatagacattatttatcaattgttagagat 13012926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 74
Target Start/End: Original strand, 13014589 - 13014628
Alignment:
Q  35 taatatagacattatttaccaattgttagagatcttaaaa 74  Q
    ||||||||| ||||||||||||||||| ||||||||||||    
T  13014589 taatatagatattatttaccaattgtttgagatcttaaaa 13014628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 35 - 77
Target Start/End: Complemental strand, 26228792 - 26228750
Alignment:
Q  35 taatatagacattatttaccaattgttagagatcttaaaataa 77  Q
    |||||||||||||||||| |||||||| || ||||||||||||    
T  26228792 taatatagacattatttatcaattgttggaaatcttaaaataa 26228750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 29171317 - 29171378
Alignment:
Q  16 gtgtgttgtaaaatatatttaatatagacattatttaccaattgttagagatcttaaaataa 77  Q
    |||||||| |||  ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  29171317 gtgtgttgaaaataatatttaatatagacattatttaccaattgttagaaatcttaaaataa 29171378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 9924511 - 9924464
Alignment:
Q  30 atatttaatatagacattatttaccaattgttagagatcttaaaataa 77  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||    
T  9924511 atatttaatatagacattatttaccaattgtttgagatcttaaaataa 9924464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 14389989 - 14389942
Alignment:
Q  30 atatttaatatagacattatttaccaattgttagagatcttaaaataa 77  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  14389989 atatttaatatagacattatttaccaattgtaagagatcataaaataa 14389942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 14391775 - 14391728
Alignment:
Q  30 atatttaatatagacattatttaccaattgttagagatcttaaaataa 77  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||    
T  14391775 atatttaatatagatattatttaccaattgttagagatcataaaataa 14391728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 5813234 - 5813284
Alignment:
Q  17 tgtgttgtaaaatatatttaatatagacattatttaccaattgttagagat 67  Q
    ||||||| |||  |||||||||||||||||||||||| |||||||||||||    
T  5813234 tgtgttgaaaataatatttaatatagacattatttacaaattgttagagat 5813284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 41973897 - 41973851
Alignment:
Q  30 atatttaatatagacattatttaccaattgttagagatcttaaaata 76  Q
    ||||||| |||| |||||||||||||||||||||| |||||||||||    
T  41973897 atatttagtataaacattatttaccaattgttagaaatcttaaaata 41973851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 58
Target Start/End: Original strand, 17323322 - 17323350
Alignment:
Q  30 atatttaatatagacattatttaccaatt 58  Q
    |||||||||||||||||||||||||||||    
T  17323322 atatttaatatagacattatttaccaatt 17323350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 34618714 - 34618766
Alignment:
Q  25 aaaatatatttaatatagacattatttaccaattgttagagatcttaaaataa 77  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  34618714 aaaagatatttaatatagacattatttaccaattgttagagatcataaaataa 34618766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 3956683 - 3956745
Alignment:
Q  15 tgtgtgttgtaaaatatatttaatatagacattatttaccaattgttagagatcttaaaataa 77  Q
    ||||||||| |||  |||||| ||||||||||||||||||||||||| ||| || ||||||||    
T  3956683 tgtgtgttgaaaataatatttgatatagacattatttaccaattgttggaggtcataaaataa 3956745  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 30 - 64
Target Start/End: Complemental strand, 3964949 - 3964915
Alignment:
Q  30 atatttaatatagacattatttaccaattgttaga 64  Q
    |||||||||||| ||||||||||||||||||||||    
T  3964949 atatttaatatatacattatttaccaattgttaga 3964915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 38390547 - 38390514
Alignment:
Q  25 aaaatatatttaatatagacattatttaccaatt 58  Q
    |||||||||||||||||||||||||||| |||||    
T  38390547 aaaatatatttaatatagacattatttatcaatt 38390514  T

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Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 26199169 - 26199122
Alignment:
Q  30 atatttaatatagacattatttaccaattgttagagatcttaaaataa 77  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26199169 atatttaatatagacattatttaccaattgttagagatcataaaataa 26199122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 41397539 - 41397586
Alignment:
Q  30 atatttaatatagacattatttaccaattgttagagatcttaaaataa 77  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  41397539 atatttaatatagacattatttaccaattgttagagatcataaaataa 41397586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 48013456 - 48013518
Alignment:
Q  30 atatttaatatagacattatttaccaattgttagagatcttaaaat-aataaatacaaatatt 91  Q
    |||||||||||| |||||||||||||||||||||||||| |||||| |||||||| |||||||    
T  48013456 atatttaatatatacattatttaccaattgttagagatcataaaataaataaataaaaatatt 48013518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 22130345 - 22130392
Alignment:
Q  30 atatttaatatagacattatttaccaattgttagagatcttaaaataa 77  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||    
T  22130345 atatttaacatagacattatttaccaattgttatagatcttaaaataa 22130392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 40500761 - 40500714
Alignment:
Q  30 atatttaatatagacattatttaccaattgttagagatcttaaaataa 77  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||    
T  40500761 atatttaacatagacattatttaccaattgttatagatcttaaaataa 40500714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 30879299 - 30879350
Alignment:
Q  30 atatttaatatagacattatttaccaattgttagagatcttaaaataataaa 81  Q
    |||||||||||| |||||||||| |||||||||||||| ||||||| |||||    
T  30879299 atatttaatataaacattatttatcaattgttagagatattaaaattataaa 30879350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 40496599 - 40496552
Alignment:
Q  30 atatttaatatagacattatttaccaattgttagagatcttaaaataa 77  Q
    ||||||||||| ||||||||||||||||| ||| ||||||||||||||    
T  40496599 atatttaatatggacattatttaccaattattatagatcttaaaataa 40496552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 48015167 - 48015210
Alignment:
Q  30 atatttaatatagacattatttaccaattgttagagatcttaaa 73  Q
    |||| ||||||| |||||||||||||||||||||||||||||||    
T  48015167 atatataatatatacattatttaccaattgttagagatcttaaa 48015210  T

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Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 11664527 - 11664574
Alignment:
Q  30 atatttaatatagacattatttaccaattgttagagatcttaaaataa 77  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  11664527 atatttaatatagacattatttatcaattgttagagatcttaaaataa 11664574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 90643 - 90705
Alignment:
Q  15 tgtgtgttgtaaaatatatttaatatagacattatttaccaattgttagagatcttaaaataa 77  Q
    ||||||||| |||  ||||||||||||||||||||||||||||||||||| || |||||||||    
T  90643 tgtgtgttgaaaataatatttaatatagacattatttaccaattgttagaaattttaaaataa 90705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 2980568 - 2980617
Alignment:
Q  25 aaaatatatttaatatagacattatttaccaattgttagagatcttaaaata 76  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  2980568 aaaatatatttaatatagacattatttaccaattgtt--agatcttaaaata 2980617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 13860348 - 13860301
Alignment:
Q  30 atatttaatatagacattatttaccaattgttagagatcttaaaataa 77  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||    
T  13860348 atatttaatatagatattatttaccaattgttagagatcataaaataa 13860301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 13858057 - 13858104
Alignment:
Q  30 atatttaatatagacattatttaccaattgttagagatcttaaaataa 77  Q
    |||||| ||||||| |||||||||||||||||||||||| ||||||||    
T  13858057 atatttcatatagatattatttaccaattgttagagatcataaaataa 13858104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 27366115 - 27366161
Alignment:
Q  31 tatttaatatagacattatttaccaattgttagagatcttaaaataa 77  Q
    |||||||||||||||||||||| ||||| ||||||||| ||||||||    
T  27366115 tatttaatatagacattatttatcaatttttagagatcataaaataa 27366161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 72
Target Start/End: Original strand, 36070671 - 36070713
Alignment:
Q  30 atatttaatatagacattatttaccaattgttagagatcttaa 72  Q
    ||||||||||||||||||||||||||||||| ||||| |||||    
T  36070671 atatttaatatagacattatttaccaattgtcagagaacttaa 36070713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 40880499 - 40880437
Alignment:
Q  15 tgtgtgttgtaaaatatatttaatatagacattatttaccaattgttagagatcttaaaataa 77  Q
    ||||||||| |||  |||||||||||||| |||||||||| ||||||||||||  ||||||||    
T  40880499 tgtgtgttgaaaataatatttaatatagatattatttaccgattgttagagattataaaataa 40880437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 7300536 - 7300598
Alignment:
Q  15 tgtgtgttgtaaaatatatttaatatagacattatttaccaattgttagagatcttaaaataa 77  Q
    ||||||||| |||  |||||||||||||||| |||||||||||||||| | ||||||||||||    
T  7300536 tgtgtgttgaaaataatatttaatatagacactatttaccaattgttaaaaatcttaaaataa 7300598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 1520261 - 1520308
Alignment:
Q  30 atatttaatatagacattatttaccaattgttagagatcttaaaataa 77  Q
    |||||||||||||||||||||||  |||||||||||||| ||||||||    
T  1520261 atatttaatatagacattatttattaattgttagagatcataaaataa 1520308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 2512549 - 2512596
Alignment:
Q  30 atatttaatatagacattatttaccaattgttagagatcttaaaataa 77  Q
    ||||||||||||||||||||||| ||||||||| | ||| ||||||||    
T  2512549 atatttaatatagacattatttatcaattgttaaaaatcataaaataa 2512596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 43 - 77
Target Start/End: Original strand, 35026018 - 35026052
Alignment:
Q  43 acattatttaccaattgttagagatcttaaaataa 77  Q
    ||||||||||| |||||||||||||||||||||||    
T  35026018 acattatttactaattgttagagatcttaaaataa 35026052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 4044694 - 4044756
Alignment:
Q  15 tgtgtgttgtaaaatatatttaatatagacattatttaccaattgttagagatcttaaaataa 77  Q
    ||||||||| |||  |||||||||||||| |||||||| |||||||||||||||||| |||||    
T  4044694 tgtgtgttgaaaataatatttaatatagatattatttatcaattgttagagatcttataataa 4044756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 3071166 - 3071213
Alignment:
Q  30 atatttaatatagacattatttaccaattgttagagatcttaaaataa 77  Q
    |||||||||||||||| |||||||||||| ||| ||||||||||||||    
T  3071166 atatttaatatagacaatatttaccaatttttaaagatcttaaaataa 3071213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 42181152 - 42181105
Alignment:
Q  30 atatttaatatagacattatttaccaattgttagagatcttaaaataa 77  Q
    ||||||||||||||| ||||||| ||||||||||||||| ||||||||    
T  42181152 atatttaatatagacgttatttatcaattgttagagatcataaaataa 42181105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 32011270 - 32011212
Alignment:
Q  17 tgtgttgtaaaatatatttaatatagacattatttaccaattgttagagatcttaaaataa 77  Q
    ||||||| |||  |||||||||||| |||||||||||||||||||  ||||||||||||||    
T  32011270 tgtgttgaaaataatatttaatataaacattatttaccaattgtt--agatcttaaaataa 32011212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 42431063 - 42431018
Alignment:
Q  32 atttaatatagacattatttaccaattgttagagatcttaaaataa 77  Q
    |||||||||| | ||||||||||||||||||||||| |||||||||    
T  42431063 atttaatatatatattatttaccaattgttagagatattaaaataa 42431018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 40604189 - 40604142
Alignment:
Q  30 atatttaatatagacattatttaccaattgttagagatcttaaaataa 77  Q
    |||||||||||||| ||||| |||||||||||||||||  ||||||||    
T  40604189 atatttaatatagatattatctaccaattgttagagattataaaataa 40604142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 22497712 - 22497765
Alignment:
Q  17 tgtgttgtaaaatatatttaatatagacattatttaccaattgttagagatctt 70  Q
    ||||||| |||  ||||||||||| ||||||||| | |||||||||||||||||    
T  22497712 tgtgttgaaaataatatttaatattgacattattgatcaattgttagagatctt 22497765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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