View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12369_low_3 (Length: 339)
Name: NF12369_low_3
Description: NF12369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12369_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 329
Target Start/End: Complemental strand, 51199116 - 51198800
Alignment:
| Q |
18 |
ccaataagagtcggtcattttagtcccctaaaattacgaaatagcaatttagtcacttaaattgaatgatgtcggtcccttaaagacggtattgtgaact |
117 |
Q |
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| T |
51199116 |
ccaataagagtcggtcattttagtcccctaaaattacgaaatagcaatttagtcacttaaattgaatgatgtcggtcccttaaagacgatattatgaact |
51199017 |
T |
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| Q |
118 |
catttggtt-----aaatcttgtggacttaacagttgagatcgggcaaagtaaacaaatacattagcaacaccaatgtgtttgagcattcaggaaagttt |
212 |
Q |
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| T |
51199016 |
catttggtttggttaaatcttgtggacttaacagttgagatcgggcaaagtaaacaaatacattagcaacaccaatgtgtttgagcattcaggaaagttt |
51198917 |
T |
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| Q |
213 |
tactcagttgctgaaagtcacatgccacaagagattgatattttttccttgaaaactttaaacaattgggaactcagcgcagcatggaatcgacctttta |
312 |
Q |
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| T |
51198916 |
tactcagttgctgaaagtcacatgccacaagagattgatattttttccttgaaaactttaaacaattgggaactcagcgcagcatggaatcgacctttta |
51198817 |
T |
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| Q |
313 |
ccagccatccacaggtt |
329 |
Q |
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| T |
51198816 |
ccagccatccaaaggtt |
51198800 |
T |
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