View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12369_low_4 (Length: 315)
Name: NF12369_low_4
Description: NF12369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12369_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 5921008 - 5920711
Alignment:
| Q |
1 |
atcacacagttgatttttgttatcaaaaacatggccaccctagttttcctaagcaacaatctagagtaaatgcagctactcatgagatccttgatgaaaa |
100 |
Q |
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|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
5921008 |
atcacacaattgatttttgttatcaaaaacatggctaccctagttttcctaagcaacaatcaagaggaaatgcagctactcatgagatccttgatgaaaa |
5920909 |
T |
|
| Q |
101 |
tggtgcattggatcatggtttggggggctctacaggttctggtacttgtttgtctccagagcaatatactcaacttgtttcc-ttgctacaacatgctag |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| || || |
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| T |
5920908 |
tggtgcattggatcatggtttggggggctctacaggttctggtacctgtttgtctccagagcaatatactcaacttgtttcctttgctacaacaggcaag |
5920809 |
T |
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| Q |
200 |
tttggtttcctcatcatctctcccttctacttcaaatgccaccaccaaccatgtccaagtcactccttttgtttctattagcatctctgctcctcctc |
297 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
5920808 |
tttggtttcctcatcatctctcccttctacttcaaattccaccaccaaccatatccaagtcactccttttgtttctactagcatctctgctactcctc |
5920711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 205
Target Start/End: Original strand, 26968721 - 26968778
Alignment:
| Q |
148 |
gtttgtctccagagcaatatactcaacttgtttccttgctacaacatgctagtttggt |
205 |
Q |
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|||| |||| |||||||||| ||||||| ||||||||||||||||| ||||||||||| |
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| T |
26968721 |
gtttatctcaagagcaatatgctcaactagtttccttgctacaacaggctagtttggt |
26968778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 20325313 - 20325019
Alignment:
| Q |
1 |
atcacacagttgatttttgttatcaaaaacatggccaccctagttttcctaagcaacaatctagagtaaatgcagctactcatgagatccttgatgaaaa |
100 |
Q |
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|||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||| ||| | ||| | |||||||||||| ||||||||| |
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| T |
20325313 |
atcacacagttgatttttgttatcaactacatggtcatcctagttttcctaagcaacaatctaaagtgactgc---ttctcatgagatccctgatgaaaa |
20325217 |
T |
|
| Q |
101 |
tggtgcattggatcatggtttggggggctctacaggttctggtacttgtttgtctccagagcaatatactcaacttgtttccttgctacaacatgctagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || || |||||| |
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| T |
20325216 |
tggtgcattggatcatggtttggggggctctacaggttctggtactagtttgtctccagagcaatatactcaacttgtttccttgctgcagcaggctagt |
20325117 |
T |
|
| Q |
201 |
ttggtttcctcatcatctctcccttctacttcaaatgccaccaccaaccatgtccaagtcactccttttgtttctattagcatctctgctcctcctca |
298 |
Q |
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||| ||||||||||||||| ||| ||||||||||||| |||||||| ||||||||| ||||||||||||||| | || ||| |||||| ||||||| |
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| T |
20325116 |
ttgatttcctcatcatctcctcctcctacttcaaatgctaccaccaatcatgtccaaaccactccttttgtttccaataacatttctgcttctcctca |
20325019 |
T |
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