View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12370_high_3 (Length: 276)
Name: NF12370_high_3
Description: NF12370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12370_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 11 - 116
Target Start/End: Complemental strand, 29463477 - 29463373
Alignment:
| Q |
11 |
cataggtatcctactttccttgaagggtaaactgatgcataatggaacaccttttcaaatgattcctaagcgaccaacacattgagtatcattatatgag |
110 |
Q |
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| T |
29463477 |
cataggtatcctactttacttgaagggtaaactgatgcataatggaacaccttttcaaatgattcctaagcgaccaacacattgagtat-attatatgag |
29463379 |
T |
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| Q |
111 |
ccgttt |
116 |
Q |
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| T |
29463378 |
ctgttt |
29463373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 29463031 - 29462955
Alignment:
| Q |
150 |
actcttaaaaacttagttcatcctttgatgaaaggactaaccggagagaaagttattcttttttaagaagccaaatgt |
227 |
Q |
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| T |
29463031 |
actcttaaaaacttagttcatcctttgatgaaaggactaaccggagagaaa-ttattcttttttaagaagccaaatgt |
29462955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 225 - 261
Target Start/End: Complemental strand, 29462921 - 29462885
Alignment:
| Q |
225 |
tgtcgtgatatattttgttcattttggtaagaaatgt |
261 |
Q |
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| T |
29462921 |
tgtcgtgatatattttgttcattttggtaagaaatgt |
29462885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 202
Target Start/End: Complemental strand, 32011695 - 32011650
Alignment:
| Q |
157 |
aaaacttagttcatcctttgatgaaaggactaaccggagagaaagt |
202 |
Q |
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| T |
32011695 |
aaaacttagctgatcctttgatgaaaggactaaacagagagaaagt |
32011650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 202
Target Start/End: Original strand, 37408514 - 37408559
Alignment:
| Q |
157 |
aaaacttagttcatcctttgatgaaaggactaaccggagagaaagt |
202 |
Q |
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| T |
37408514 |
aaaacttagttgatcctttgacgaaaggactaaacagagagaaagt |
37408559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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