View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12370_high_4 (Length: 262)
Name: NF12370_high_4
Description: NF12370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12370_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 44728522 - 44728767
Alignment:
| Q |
1 |
ttggcactttcattgaaaagtgcgctaatcaagtctttcaggttggaaattgcatcctcatgcgcttgggagagtgagacgttgctactactagctccat |
100 |
Q |
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| T |
44728522 |
ttggcactttcgttgaaaagtgcgctaatcaagtctttcaggttggaaactgcatcctcatgcgcttgggagagtgagacgttactactactagctccat |
44728621 |
T |
|
| Q |
101 |
cagtaaagacatgatcgaaagtttcgaaatatctcttaatcatctcatttatactttctttccaaatctccactctggaaccattccacacagaaacaca |
200 |
Q |
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| T |
44728622 |
cagtaaagacatgatcgaaagtttcgaaatatctcttaatcatctcatttatactttctttccaaatctccactctggaaccattccacacagaaacaca |
44728721 |
T |
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| Q |
201 |
gcatggtgatctgccaatgtcaattccaagtgttatttcaggaaga |
246 |
Q |
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| T |
44728722 |
gcatggtgatctgccaatgtcaattccaagtgttatttcaggaaga |
44728767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 42927576 - 42927634
Alignment:
| Q |
184 |
ttccacacagaaacacagcatggtgatctgccaatgtcaattccaagtgttatttcagg |
242 |
Q |
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| T |
42927576 |
ttccacacagaaacacggcatggtgatgtgccaatgtcaattccaattgctatttcagg |
42927634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 248
Target Start/End: Original strand, 21111362 - 21111425
Alignment:
| Q |
185 |
tccacacagaaacacagcatggtgatctgccaatgtcaattccaagtgttatttcaggaagatg |
248 |
Q |
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| T |
21111362 |
tccacacggaaacacaacatgttgatgtgccaatgtcaattccaattgctatttcagcaagatg |
21111425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 244
Target Start/End: Complemental strand, 39241023 - 39240938
Alignment:
| Q |
159 |
tttccaaatctccactctggaaccattccacacagaaacacagcatggtgatctgccaatgtcaattccaagtgttatttcaggaa |
244 |
Q |
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|||| ||||||||||| |||||||||||| || | |||| |||| |||| ||||||| |||||||||| || ||||||||||| |
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| T |
39241023 |
tttcaaaatctccacttgggaaccattccatactgctacactgcattgtgaggtgccaatatcaattccaactgctatttcaggaa |
39240938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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