View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12370_high_6 (Length: 244)
Name: NF12370_high_6
Description: NF12370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12370_high_6 |
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| [»] chr4 (4 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 44728443 - 44728200
Alignment:
| Q |
1 |
aaccactgcagtagaactccttggaaactttctggtgaatttaaaagaaatggctgaaactgaactgaaacaaccaataagaaatgtagtgtttattatt |
100 |
Q |
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| T |
44728443 |
aaccactgcagtagaactccttggaaactttctggtgaatttaaaagaaatggctgaaactgaactgaaacaacctataagaaatgtagtgtttattatt |
44728344 |
T |
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| Q |
101 |
ccagtttcgttcagtcgattgcagcaaacccagatacgtatcgcttgtgagatggccggtctaaaagttatcagactgatgcctgaaccaacagcagtgg |
200 |
Q |
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| T |
44728343 |
ccagtttcgttcagtcgattgcagcaaacccggatacgtatcgcttgtgagatggccggtctaaaagttattagactgatgcctgaaccaacagcagtgg |
44728244 |
T |
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| Q |
201 |
ctttgctttatgcacatcaacaactgcatgcttcggcttcttct |
244 |
Q |
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| T |
44728243 |
ctttgctttatgcacatcaacaactgcatgcttctgcttcttct |
44728200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 244
Target Start/End: Complemental strand, 42927448 - 42927206
Alignment:
| Q |
2 |
accactgcagtagaactccttggaaactttctggtgaatttaaaagaaatggctgaaactgaactgaaacaaccaataagaaatgtagtgtttattattc |
101 |
Q |
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| T |
42927448 |
accactgcagtagaactccttggaaaatttctggtgaaattaaagttttcggttgaaattcgggtgaaaatacctataagaaaggtagtgtttactgttc |
42927349 |
T |
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| Q |
102 |
cagtttcgttcagtcgattgcagcaaacccagatacgtatcgcttgtgagatggccggtctaaaagttatcagactgatgcctgaaccaacagcagtggc |
201 |
Q |
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| T |
42927348 |
cagtttcattcactcgattgcggcgaacccagatagaacgcgcttctgcgtgggctgatcttgatgatgttgaactgatgcctcaaccaatagcagtggc |
42927249 |
T |
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| Q |
202 |
tttgctttatgcacatcaacaactgcatgcttcggcttcttct |
244 |
Q |
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| T |
42927248 |
tttgttttatgcacaacaacaactgcagacttctgcttcttct |
42927206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 47880004 - 47879940
Alignment:
| Q |
51 |
tggctgaaactgaactgaaacaaccaataagaaatgtagtgtttattattccagtttcgttcagt |
115 |
Q |
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| T |
47880004 |
tggctgaaactcaactgaaacgacggataagaaatgtagtgtttacagttccagtttccttcagt |
47879940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 223
Target Start/End: Original strand, 47842649 - 47842696
Alignment:
| Q |
176 |
ctgatgcctgaaccaacagcagtggctttgctttatgcacatcaacaa |
223 |
Q |
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| T |
47842649 |
ctgatgcctcaaccaacagcagtggctttgttgtatgcacagcaacaa |
47842696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 244
Target Start/End: Complemental strand, 21354388 - 21354321
Alignment:
| Q |
177 |
tgatgcctgaaccaacagcagtggctttgctttatgcacatcaacaactgcatgcttcggcttcttct |
244 |
Q |
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| T |
21354388 |
tgattcctcaactaacagcagtggctctgttgtatgcacaacaacaactgcatgcttctgcttcttct |
21354321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 21282753 - 21282672
Alignment:
| Q |
14 |
gaactccttggaaactttctggtgaatttaaaagaaatggctgaaactgaactgaaacaaccaataagaaatgtagtgttta |
95 |
Q |
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| T |
21282753 |
gaactcattggaaaatttctggtggaattaatagtaatggctgaaattcaaccaaaacaacctataaaaaatgtactgttta |
21282672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 224
Target Start/End: Original strand, 39241416 - 39241497
Alignment:
| Q |
143 |
gcttgtgagatggccggtctaaaagttatcagactgatgcctgaaccaacagcagtggctttgctttatgcacatcaacaac |
224 |
Q |
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| T |
39241416 |
gcttgtgcgatggctggtcttcatgttcttaggctgatgcctgaaccaacagctgtggcattgttatatgcacagcaacaac |
39241497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 39241337 - 39241401
Alignment:
| Q |
54 |
ctgaaactgaactgaaacaaccaataagaaatgtagtgtttattattccagtttcgttcagtcga |
118 |
Q |
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| T |
39241337 |
ctgaaactcatctgaaacgaccaataagaaatgttgtgcttacagttccagtttcattcagtcga |
39241401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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