View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12370_high_9 (Length: 235)

Name: NF12370_high_9
Description: NF12370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12370_high_9
NF12370_high_9
[»] chr5 (14 HSPs)
chr5 (3-227)||(36286129-36286354)
chr5 (3-77)||(5002210-5002284)
chr5 (169-227)||(36288290-36288348)
chr5 (3-67)||(18473489-18473553)
chr5 (10-73)||(8511460-8511523)
chr5 (1-68)||(36434746-36434813)
chr5 (5-70)||(16619028-16619094)
chr5 (3-68)||(22101921-22101986)
chr5 (3-76)||(29299362-29299435)
chr5 (3-67)||(18718252-18718316)
chr5 (3-67)||(38362393-38362457)
chr5 (25-76)||(38394433-38394484)
chr5 (25-75)||(14913198-14913248)
chr5 (3-57)||(33478131-33478185)
[»] chr7 (21 HSPs)
chr7 (3-67)||(30869256-30869320)
chr7 (3-76)||(28677387-28677460)
chr7 (4-76)||(9979871-9979943)
chr7 (3-76)||(10462382-10462455)
chr7 (3-67)||(8566151-8566215)
chr7 (3-67)||(36245446-36245510)
chr7 (3-67)||(11668085-11668149)
chr7 (8-67)||(43174299-43174358)
chr7 (3-70)||(48082810-48082877)
chr7 (3-85)||(2610183-2610265)
chr7 (3-67)||(4925905-4925969)
chr7 (24-76)||(13807247-13807299)
chr7 (25-67)||(30823723-30823765)
chr7 (18-70)||(30486665-30486717)
chr7 (3-79)||(44682568-44682644)
chr7 (25-76)||(2523862-2523913)
chr7 (3-65)||(45441506-45441568)
chr7 (3-76)||(10007646-10007719)
chr7 (3-64)||(45533247-45533308)
chr7 (38-86)||(3411437-3411485)
chr7 (3-63)||(34118009-34118069)
[»] chr1 (16 HSPs)
chr1 (3-75)||(519903-519975)
chr1 (1-67)||(38737999-38738065)
chr1 (3-76)||(34332481-34332554)
chr1 (3-76)||(38040346-38040419)
chr1 (3-76)||(26070829-26070902)
chr1 (3-67)||(49944847-49944911)
chr1 (1-67)||(7375537-7375603)
chr1 (3-79)||(640524-640599)
chr1 (3-67)||(23923564-23923628)
chr1 (5-67)||(23923408-23923470)
chr1 (18-76)||(50155383-50155441)
chr1 (1-70)||(27819380-27819449)
chr1 (25-76)||(29256690-29256741)
chr1 (17-68)||(47883976-47884027)
chr1 (1-67)||(24305733-24305799)
chr1 (3-73)||(44939136-44939206)
[»] chr4 (20 HSPs)
chr4 (3-86)||(48361047-48361130)
chr4 (3-76)||(25477615-25477688)
chr4 (3-76)||(44111815-44111888)
chr4 (3-70)||(50121448-50121515)
chr4 (18-79)||(4386138-4386199)
chr4 (3-76)||(41116567-41116640)
chr4 (3-67)||(30191910-30191974)
chr4 (3-78)||(36132705-36132780)
chr4 (4-67)||(42169114-42169177)
chr4 (3-53)||(35429843-35429893)
chr4 (3-76)||(3162900-3162973)
chr4 (18-67)||(8347659-8347708)
chr4 (10-78)||(23226953-23227021)
chr4 (3-77)||(9894629-9894703)
chr4 (25-67)||(19150672-19150714)
chr4 (25-67)||(47943741-47943783)
chr4 (38-87)||(32517764-32517813)
chr4 (3-67)||(16412248-16412312)
chr4 (25-73)||(33010682-33010730)
chr4 (3-67)||(48195904-48195968)
[»] scaffold0767 (1 HSPs)
scaffold0767 (3-85)||(3719-3801)
[»] chr6 (9 HSPs)
chr6 (3-76)||(2230419-2230492)
chr6 (3-75)||(2972170-2972242)
chr6 (3-76)||(30627828-30627901)
chr6 (3-67)||(17265791-17265855)
chr6 (3-67)||(28630767-28630831)
chr6 (12-67)||(33119981-33120036)
chr6 (32-85)||(9077685-9077738)
chr6 (3-76)||(17705932-17706005)
chr6 (25-76)||(12999847-12999899)
[»] chr3 (11 HSPs)
chr3 (3-79)||(44518038-44518114)
chr3 (3-73)||(54537451-54537521)
chr3 (3-82)||(43343440-43343519)
chr3 (3-84)||(12747767-12747848)
chr3 (3-68)||(52864964-52865029)
chr3 (25-85)||(21662882-21662942)
chr3 (1-72)||(43448967-43449038)
chr3 (4-66)||(16295401-16295463)
chr3 (1-51)||(43014485-43014535)
chr3 (3-67)||(53357358-53357423)
chr3 (25-73)||(51723386-51723434)
[»] chr2 (20 HSPs)
chr2 (3-66)||(32457283-32457346)
chr2 (3-71)||(33824360-33824428)
chr2 (17-76)||(42698148-42698207)
chr2 (18-76)||(41153196-41153254)
chr2 (10-76)||(43714050-43714116)
chr2 (10-67)||(30758797-30758853)
chr2 (19-67)||(5559377-5559425)
chr2 (3-67)||(10204941-10205004)
chr2 (24-84)||(29169926-29169986)
chr2 (3-63)||(39445013-39445073)
chr2 (25-86)||(5109358-5109419)
chr2 (3-76)||(9152449-9152522)
chr2 (25-70)||(12962716-12962761)
chr2 (3-76)||(30761383-30761456)
chr2 (3-67)||(38983069-38983133)
chr2 (3-76)||(7943509-7943583)
chr2 (17-67)||(11030276-11030326)
chr2 (3-77)||(20555262-20555336)
chr2 (25-67)||(36881547-36881589)
chr2 (19-84)||(21424988-21425053)
[»] chr8 (12 HSPs)
chr8 (3-77)||(8453664-8453738)
chr8 (6-67)||(43332574-43332635)
chr8 (3-76)||(5031469-5031542)
chr8 (1-66)||(16448857-16448922)
chr8 (1-70)||(34711092-34711161)
chr8 (24-74)||(15726850-15726900)
chr8 (4-84)||(16008594-16008674)
chr8 (3-67)||(35149738-35149802)
chr8 (3-51)||(42123036-42123084)
chr8 (25-67)||(7693125-7693167)
chr8 (18-76)||(10184636-10184694)
chr8 (32-86)||(24822822-24822876)
[»] scaffold0110 (2 HSPs)
scaffold0110 (25-64)||(40283-40322)
scaffold0110 (18-86)||(1617-1685)
[»] scaffold0136 (1 HSPs)
scaffold0136 (3-69)||(16541-16607)


Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 3 - 227
Target Start/End: Original strand, 36286129 - 36286354
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataagatcggagagaatattatgcaatgtctctatcaa 102  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||     ||||| |||||||| |||||||||||||||||||||||||||||    
T  36286129 tatattctagacatgatacatcaattactcaattaatctaaaaagtcaaaaaaaaattatagataagatcagagagaatattatgcaatgtctctatcaa 36286228  T
Q  103 ataagttaaa-acaatcaaataatttctttaatcccactagtttaagatgtgtaattacaaagtatagtgggtttgaaaacagtagaagattaacattga 201  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36286229 ataagttaaagacaatcaaataatttctttaatcccactggtttaagatgtgtaattacaaagtatagtgggtttgaaaacagtagaagattaacattga 36286328  T
Q  202 tcaaaatacgaaaaattgagaccaca 227  Q
    ||||||||||||||||||||||||||    
T  36286329 tcaaaatacgaaaaattgagaccaca 36286354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 5002210 - 5002284
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataagatcggaga 77  Q
    |||||| |||||| |||||| |||||||||||| |||||||||||| |||||||||||||||||| || ||||||    
T  5002210 tatattttagacaagatacatcaattactcaataaatctaaaaagtaaaaattttcttataaataggagcggaga 5002284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 36288290 - 36288348
Alignment:
Q  169 gtgggtttgaaaacagtagaagattaacattgatcaaaatacgaaaaattgagaccaca 227  Q
    ||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||    
T  36288290 gtgggtttgaaaacaatagaagattgacatcgatcaaaatacgaaaaattgagaccaca 36288348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 18473553 - 18473489
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaata 67  Q
    ||||||||||||| |||||| |||||||||||| |||||||||||||||| || ||| |||||||    
T  18473553 tatattctagacaagatacatcaattactcaatgaatctaaaaagtcaaatttctctcataaata 18473489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 8511460 - 8511523
Alignment:
Q  10 tagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataagatcg 73  Q
    |||||| |||||  |||||||||||| |||||||||||||||||||||||| |||||| |||||    
T  8511460 tagacaagatacgtcaattactcaatgaatctaaaaagtcaaaattttcttctaaataggatcg 8511523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 36434746 - 36434813
Alignment:
Q  1 tttatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataa 68  Q
    |||||||| |||||| |||||| |||||||| ||| |||||||||||| ||| |||||||||||||||    
T  36434746 tttatattttagacaagatacatcaattacttaatgaatctaaaaagttaaatttttcttataaataa 36434813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 16619094 - 16619028
Alignment:
Q  5 tattctagacatgatacaccaattactcaattaatct-aaaaagtcaaaattttcttataaataaga 70  Q
    |||||||||||||||||| |||||||||||  ||||| ||||| ||||| |||||||||||||||||    
T  16619094 tattctagacatgatacatcaattactcaacgaatctaaaaaaatcaaatttttcttataaataaga 16619028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 22101986 - 22101921
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataa 68  Q
    |||||| |||||| ||||||  |||||| |||| |||||||||| ||||| |||||||||||||||    
T  22101986 tatattttagacaagatacattaattacacaatgaatctaaaaaatcaaatttttcttataaataa 22101921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 29299435 - 29299362
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataagatcggag 76  Q
    |||||| ||||||  ||||| |||| ||||||| |||||||||| ||||| |||||||||||||| || |||||    
T  29299435 tatattttagacaaaatacatcaatcactcaatgaatctaaaaaatcaaatttttcttataaataggaccggag 29299362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 18718316 - 18718252
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaata 67  Q
    ||||||||||||| ||||||  ||||||||||| ||| ||||| || ||| ||||||||||||||    
T  18718316 tatattctagacaagatacattaattactcaataaatttaaaatgttaaatttttcttataaata 18718252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 38362457 - 38362393
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaata 67  Q
    |||||| |||| | |||||| |||||  ||| |||||||||||||| ||||||||||||||||||    
T  38362457 tatattttagataagatacatcaatttttcagttaatctaaaaagttaaaattttcttataaata 38362393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 38394484 - 38394433
Alignment:
Q  25 aattactcaattaatctaaaaagtcaaaattttcttataaataagatcggag 76  Q
    ||||| ||||| |||||||||||||||  |||||||||||||| ||||||||    
T  38394484 aattattcaatgaatctaaaaagtcaattttttcttataaataggatcggag 38394433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 14913198 - 14913248
Alignment:
Q  25 aattactcaattaatctaaaaagtcaaaattttcttataaataagatcgga 75  Q
    ||||||||||| ||| |||||| ||||| |||||||||||||| |||||||    
T  14913198 aattactcaatgaatttaaaaaatcaaatttttcttataaataggatcgga 14913248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 33478185 - 33478131
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaatttt 57  Q
    ||||||||||||  |||||| |||||||||||| |||||||||| ||||| ||||    
T  33478185 tatattctagacgagatacatcaattactcaatgaatctaaaaattcaaattttt 33478131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 30869256 - 30869320
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaata 67  Q
    ||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  30869256 tatattctagacaagatacatcaattactcaatgaatctaaaaagtcaaaattttcttataaata 30869320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 28677387 - 28677460
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataagatcggag 76  Q
    ||||||||||||| |||||| |||||||||||| |||||||||||||||  |||||||||||||| ||||||||    
T  28677387 tatattctagacaagatacatcaattactcaataaatctaaaaagtcaattttttcttataaataggatcggag 28677460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 9979871 - 9979943
Alignment:
Q  4 atattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataagatcggag 76  Q
    |||||||||||| ||||||  ||||||||||| |||||||||||||||| |||||||||||||||| ||||||    
T  9979871 atattctagacaagatacatgaattactcaataaatctaaaaagtcaaatttttcttataaataagttcggag 9979943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 10462455 - 10462382
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataagatcggag 76  Q
    |||||| |||||| |||||| |||| ||||||| |||||||||||||| | |||||||||||||||||||||||    
T  10462455 tatattttagacaagatacatcaatcactcaatgaatctaaaaagtcacatttttcttataaataagatcggag 10462382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 8566151 - 8566215
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaata 67  Q
    ||||||||||||| |||||| |||||||||||| |||||||||| ||||| ||||||||||||||    
T  8566151 tatattctagacaagatacatcaattactcaatgaatctaaaaaatcaaatttttcttataaata 8566215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 36245446 - 36245510
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaata 67  Q
    ||||||||||||| |||||| |||||||||||| |||||||||||||||  ||||||||||||||    
T  36245446 tatattctagacaagatacatcaattactcaatgaatctaaaaagtcaattttttcttataaata 36245510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 11668085 - 11668149
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaata 67  Q
    ||||||||||||| |||||| |||||| ||||| ||| |||||||||||| ||||||||||||||    
T  11668085 tatattctagacaagatacatcaattaatcaatgaatgtaaaaagtcaaatttttcttataaata 11668149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 43174358 - 43174299
Alignment:
Q  8 tctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaata 67  Q
    |||||||| |||||| |||||| | |||||||||||||||| ||||||||||||||||||    
T  43174358 tctagacaagatacatcaattatttaattaatctaaaaagttaaaattttcttataaata 43174299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 48082877 - 48082810
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataaga 70  Q
    ||||||||| ||||||||||  |||||| |||| |||||||||||||||  |||||||||||||||||    
T  48082877 tatattctacacatgatacattaattacacaatgaatctaaaaagtcaactttttcttataaataaga 48082810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 2610265 - 2610183
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataagatcggagagaatatta 85  Q
    ||||||||||||   ||||| |||||||||||| ||| |||||| ||||| |||||||||||||  || ||||||||||||||    
T  2610265 tatattctagaccaaatacatcaattactcaatgaatttaaaaaatcaaatttttcttataaatcggaccggagagaatatta 2610183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 4925969 - 4925905
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaata 67  Q
    |||||| |||||| | |||| |||||||| ||| |||||||||||||||| ||||||||||||||    
T  4925969 tatattttagacaagttacatcaattacttaatgaatctaaaaagtcaaatttttcttataaata 4925905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 13807299 - 13807247
Alignment:
Q  24 caattactcaattaatctaaaaagtcaaaattttcttataaataagatcggag 76  Q
    |||||||||||| |||||||||||||||  ||||||||||||||||| |||||    
T  13807299 caattactcaatgaatctaaaaagtcaactttttcttataaataagaccggag 13807247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 30823765 - 30823723
Alignment:
Q  25 aattactcaattaatctaaaaagtcaaaattttcttataaata 67  Q
    |||| |||||| |||||||||||||||||||||||||||||||    
T  30823765 aatttctcaatgaatctaaaaagtcaaaattttcttataaata 30823723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 30486665 - 30486717
Alignment:
Q  18 atacaccaattactcaattaatctaaaaagtcaaaattttcttataaataaga 70  Q
    ||||| || ||| ||||| |||||||||||||||||||| |||||||||||||    
T  30486665 atacatcatttattcaataaatctaaaaagtcaaaatttacttataaataaga 30486717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 44682644 - 44682568
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataagatcggagaga 79  Q
    |||| ||||||||  ||||| || ||||| ||| ||||| |||||||||| |||||||||||||| || ||||||||    
T  44682644 tataatctagacaaaatacatcagttacttaatgaatctcaaaagtcaaatttttcttataaataggaccggagaga 44682568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 2523862 - 2523913
Alignment:
Q  25 aattactcaattaatctaaaaagtcaaaattttcttataaataagatcggag 76  Q
    ||||||||||| |||||||||||||||  |||||||||||||| || |||||    
T  2523862 aattactcaatgaatctaaaaagtcaactttttcttataaataggaccggag 2523913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 45441506 - 45441568
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaa 65  Q
    ||||||||||||| ||||||||||||| ||| | |||||||||||| ||  |||| |||||||    
T  45441506 tatattctagacaagatacaccaattattcattgaatctaaaaagttaatttttttttataaa 45441568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 10007646 - 10007719
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataagatcggag 76  Q
    ||||||||| ||| ||||||  |||||  |||| |||||||||||||||  |||||||||||||| || |||||    
T  10007646 tatattctacacaagatacattaattatacaatgaatctaaaaagtcaactttttcttataaataggaccggag 10007719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 45533308 - 45533247
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataa 64  Q
    ||||||||||||| ||||||  ||||||  ||| |||||||||||||||  |||||||||||    
T  45533308 tatattctagacaagatacattaattacataatgaatctaaaaagtcaattttttcttataa 45533247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 3411437 - 3411485
Alignment:
Q  38 atctaaaaagtcaaaattttcttataaataagatcggagagaatattat 86  Q
    ||||||||||||||| || ||||||||||| |||||||| || ||||||    
T  3411437 atctaaaaagtcaaatttctcttataaataggatcggagggagtattat 3411485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 34118009 - 34118069
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttata 63  Q
    ||||||||||||| ||||||  |||||| |||| ||| |||||||||||  ||||||||||    
T  34118009 tatattctagacaagatacattaattacacaatgaatttaaaaagtcaactttttcttata 34118069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 519903 - 519975
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataagatcgga 75  Q
    ||||||||||| | |||||| |||||||||||| |||||||||||| |||||||||||||||||| |||||||    
T  519903 tatattctagataagatacatcaattactcaatgaatctaaaaagttaaaattttcttataaataggatcgga 519975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 38737999 - 38738065
Alignment:
Q  1 tttatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaata 67  Q
    ||||||||||||||| |||||| |||||||||||| |||||||||||| ||| ||||||||||||||    
T  38737999 tttatattctagacaagatacatcaattactcaatgaatctaaaaagttaaatttttcttataaata 38738065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 34332554 - 34332481
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataagatcggag 76  Q
    |||||||||||||  ||||| |||||||||||| |||||||||||||||| |||||||||| ||||||| ||||    
T  34332554 tatattctagacaaaatacatcaattactcaatgaatctaaaaagtcaaagttttcttatatataagattggag 34332481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 38040346 - 38040419
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataagatcggag 76  Q
    ||||||||||||| |||||| |||||| ||||| |||||||||||||||| |||||||||||||| || |||||    
T  38040346 tatattctagacaagatacatcaattaatcaatgaatctaaaaagtcaaatttttcttataaataggaccggag 38040419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 26070902 - 26070829
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataagatcggag 76  Q
    ||||||||||| | |||||| |||||||||||| |||||||||||||||| ||  ||||||||||||| |||||    
T  26070902 tatattctagataagatacatcaattactcaatgaatctaaaaagtcaaatttcacttataaataagaccggag 26070829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 49944911 - 49944847
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaata 67  Q
    ||||||||||||| |||||| |||||| ||||| |||||||||||| ||| ||||||||||||||    
T  49944911 tatattctagacaagatacatcaattattcaatgaatctaaaaagttaaatttttcttataaata 49944847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 7375537 - 7375603
Alignment:
Q  1 tttatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaata 67  Q
    ||||||||||||||| ||||||  |||||| |||| |||||||||||||||  ||||||||||||||    
T  7375537 tttatattctagacaagatacattaattacacaatgaatctaaaaagtcaattttttcttataaata 7375603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 640599 - 640524
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataagatcggagaga 79  Q
    |||||| |||| | |||||| |||||||||| | |||||||||||||||  ||||||||||||||| ||||||||||    
T  640599 tatattttagataagatacatcaattactca-tgaatctaaaaagtcaattttttcttataaataaaatcggagaga 640524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 23923628 - 23923564
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaata 67  Q
    |||||||||||||  |||||  ||||||||||| |||||||||| ||||| ||||||||||||||    
T  23923628 tatattctagacaatatacattaattactcaatgaatctaaaaattcaaatttttcttataaata 23923564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 23923470 - 23923408
Alignment:
Q  5 tattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaata 67  Q
    ||||||||||| |||||| |||||| ||||  |||||||||| ||||| ||||||||||||||    
T  23923470 tattctagacaagatacatcaattattcaacgaatctaaaaattcaaatttttcttataaata 23923408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 50155383 - 50155441
Alignment:
Q  18 atacaccaattactcaattaatctaaaaagtcaaaattttcttataaataagatcggag 76  Q
    ||||| |||||||||||| |||||||||||||||  |||||||||||||| || |||||    
T  50155383 atacatcaattactcaatgaatctaaaaagtcaactttttcttataaataggaccggag 50155441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 27819380 - 27819449
Alignment:
Q  1 tttatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataaga 70  Q
    |||||||| ||||||  ||||||||| || ||||| |||||||||||| ||| ||||||| |||||||||    
T  27819380 tttatattttagacaaaatacaccaaatattcaatgaatctaaaaagttaaatttttcttgtaaataaga 27819449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 29256690 - 29256741
Alignment:
Q  25 aattactcaattaatctaaaaagtcaaaattttcttataaataagatcggag 76  Q
    ||||||||||| |||||||||||||||  |||||||||||||| || |||||    
T  29256690 aattactcaatgaatctaaaaagtcaactttttcttataaataggaccggag 29256741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 47884027 - 47883976
Alignment:
Q  17 gatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataa 68  Q
    |||||| |||||||| ||||||| |||||||||||  |||||||||||||||    
T  47884027 gatacatcaattactaaattaatttaaaaagtcaattttttcttataaataa 47883976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 24305733 - 24305799
Alignment:
Q  1 tttatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaata 67  Q
    ||||||||||| ||| |||||| |||||||||||| ||| |||||| | ||| ||||||| ||||||    
T  24305733 tttatattctatacaagatacatcaattactcaataaatttaaaaaattaaatttttcttctaaata 24305799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 44939136 - 44939206
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataagatcg 73  Q
    |||||||||||   |||||| |||||||||||| |||||||||| ||||  || ||||||||||| |||||    
T  44939136 tatattctagattagatacatcaattactcaatgaatctaaaaaatcaattttctcttataaatatgatcg 44939206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 48361130 - 48361047
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataagatcggagagaatattat 86  Q
    |||||||||||||  ||||| |||||||||||| |||||||||||||||| |||||||||||||| || ||||| || ||||||    
T  48361130 tatattctagacaaaatacatcaattactcaatgaatctaaaaagtcaaatttttcttataaataggaccggagggagtattat 48361047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 25477615 - 25477688
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataagatcggag 76  Q
    ||||||||| |||  ||||| |||||||||||| ||| ||||||||||||||||||||||||||| | ||||||    
T  25477615 tatattctacacaaaatacatcaattactcaatgaatttaaaaagtcaaaattttcttataaatatggtcggag 25477688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 44111815 - 44111888
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataagatcggag 76  Q
    ||||||||| | | |||||| |||||||||||| |||||||||||||||  ||||||||||||||||| |||||    
T  44111815 tatattctaaagaagatacatcaattactcaatgaatctaaaaagtcaactttttcttataaataagaccggag 44111888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 50121515 - 50121448
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataaga 70  Q
    ||||| ||||||| |||||| |||| | ||||| |||||||||||||||| |||||||||||||||||    
T  50121515 tatatactagacaagatacatcaatcattcaataaatctaaaaagtcaaatttttcttataaataaga 50121448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 4386199 - 4386138
Alignment:
Q  18 atacaccaattactcaattaatctaaaaagtcaaaattttcttataaataagatcggagaga 79  Q
    ||||| |||||||| ||| ||| |||||||||||| |||||||||||||||||| |||||||    
T  4386199 atacatcaattacttaatgaatttaaaaagtcaaatttttcttataaataagattggagaga 4386138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 41116640 - 41116567
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataagatcggag 76  Q
    |||||| |||| | |||||| |||||||||||| |||||||||||| ||| |||||||||||||| || |||||    
T  41116640 tatattttagataagatacatcaattactcaatgaatctaaaaagttaaatttttcttataaataggaccggag 41116567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 30191974 - 30191910
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaata 67  Q
    |||||||||||||  ||||| |||||||||||| |||||||||| ||||  ||||||||||||||    
T  30191974 tatattctagacaaaatacatcaattactcaatgaatctaaaaaatcaattttttcttataaata 30191910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 36132705 - 36132780
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataagatcggagag 78  Q
    ||||||| ||||| |||||| ||| ||||||||  |||| |||||||||  ||||||||||||||||| |||||||    
T  36132705 tatattcaagacaagatacatcaactactcaatgtatcttaaaagtcaattttttcttataaataagaccggagag 36132780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 42169114 - 42169177
Alignment:
Q  4 atattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaata 67  Q
    |||||| |||||  ||||| |||||| ||||| |||||||||||||||| ||||||||||||||    
T  42169114 atattcaagacaaaatacatcaattattcaataaatctaaaaagtcaaatttttcttataaata 42169177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 35429843 - 35429893
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaa 53  Q
    ||||||||||||| |||||| ||||||||||||||||||||| ||| ||||    
T  35429843 tatattctagacaagatacatcaattactcaattaatctaaagagtaaaaa 35429893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 3162973 - 3162900
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataagatcggag 76  Q
    ||||||||||||| |||| |  |||||| |||| ||| |||||||||||  ||||||||||||||||| |||||    
T  3162973 tatattctagacaagatatattaattacacaatgaatttaaaaagtcaattttttcttataaataagaccggag 3162900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 8347708 - 8347659
Alignment:
Q  18 atacaccaattactcaattaatctaaaaagtcaaaattttcttataaata 67  Q
    ||||| |||| ||||||| |||||||||||||||| ||||||||||||||    
T  8347708 atacatcaatcactcaatgaatctaaaaagtcaaatttttcttataaata 8347659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 23227021 - 23226953
Alignment:
Q  10 tagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataagatcggagag 78  Q
    |||||| ||||||  ||||||  ||| |||||||||||||||  ||||||||||||||| |||||||||    
T  23227021 tagacaagatacattaattacataatgaatctaaaaagtcaattttttcttataaataaaatcggagag 23226953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 9894703 - 9894629
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataagatcggaga 77  Q
    ||||||||||||| ||||||  ||| ||  ||| |||||||||||||||  |||||||||||||| || ||||||    
T  9894703 tatattctagacaagatacattaataacataatgaatctaaaaagtcaactttttcttataaataggaccggaga 9894629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 19150714 - 19150672
Alignment:
Q  25 aattactcaattaatctaaaaagtcaaaattttcttataaata 67  Q
    ||||||||||| |||||||||||||||  ||||||||||||||    
T  19150714 aattactcaataaatctaaaaagtcaactttttcttataaata 19150672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 47943783 - 47943741
Alignment:
Q  25 aattactcaattaatctaaaaagtcaaaattttcttataaata 67  Q
    |||||||||||||||||||||||||||  ||||| ||||||||    
T  47943783 aattactcaattaatctaaaaagtcaattttttcatataaata 47943741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 32517813 - 32517764
Alignment:
Q  38 atctaaaaagtcaaaattttcttataaataagatcggagagaatattatg 87  Q
    ||||||||||||||  || ||||||||||| || ||||||||||||||||    
T  32517813 atctaaaaagtcaactttctcttataaataggaccggagagaatattatg 32517764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 16412312 - 16412248
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaata 67  Q
    ||||||||||||   ||| | |||||| ||||| |||||||||||||||  ||||||||||||||    
T  16412312 tatattctagaccaaatatatcaattattcaatgaatctaaaaagtcaattttttcttataaata 16412248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 33010730 - 33010682
Alignment:
Q  25 aattactcaattaatctaaaaagtcaaaattttcttataaataagatcg 73  Q
    |||||| ||||||||||||||| ||||  |||||||||||||| |||||    
T  33010730 aattacacaattaatctaaaaaatcaattttttcttataaataggatcg 33010682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 48195968 - 48195904
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaata 67  Q
    ||||||||||||| |||||  |||||||||||| ||| |||||||| |   ||||||||||||||    
T  48195968 tatattctagacaagatacgtcaattactcaatgaatttaaaaagttagttttttcttataaata 48195904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0767 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 3801 - 3719
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataagatcggagagaatatta 85  Q
    |||||||||||||  ||||| |||||||||||| ||| |||||||||||| |||||||||| |||||| ||||| ||||||||    
T  3801 tatattctagacaaaatacatcaattactcaataaatgtaaaaagtcaaatttttcttatatataagaccggagggaatatta 3719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 2230419 - 2230492
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataagatcggag 76  Q
    ||||||||||||| ||||||  ||||||||||| |||||||||||||||| |||||||||||||| || |||||    
T  2230419 tatattctagacaagatacattaattactcaatgaatctaaaaagtcaaagttttcttataaataggaccggag 2230492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 2972242 - 2972170
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataagatcgga 75  Q
    |||||| |||| | ||||||||||||||||||| |||||||||||||||| || |||||||||||||| ||||    
T  2972242 tatattttagataagatacaccaattactcaataaatctaaaaagtcaaatttctcttataaataagaccgga 2972170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 30627901 - 30627828
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataagatcggag 76  Q
    |||||| |||||| |||||| |||||||||||| ||| |||||| ||||| ||||||||||||||||| |||||    
T  30627901 tatattttagacaagatacatcaattactcaataaatataaaaaatcaaatttttcttataaataagaccggag 30627828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 17265791 - 17265855
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaata 67  Q
    ||||||||||||| |||||| ||||||||| || ||| |||||| ||||| ||||||||||||||    
T  17265791 tatattctagacaagatacatcaattactcgatgaatttaaaaaatcaaatttttcttataaata 17265855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 28630831 - 28630767
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaata 67  Q
    |||||| |||||| |||||| |||||||||||| |||  ||||||||||| ||||||||||||||    
T  28630831 tatattatagacaagatacatcaattactcaatgaataaaaaaagtcaaatttttcttataaata 28630767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 33119981 - 33120036
Alignment:
Q  12 gacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaata 67  Q
    |||| |||||| | |||| ||||| |||||||||||||||||||||||||||||||    
T  33119981 gacaagatacatcgattattcaatgaatctaaaaagtcaaaattttcttataaata 33120036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 9077685 - 9077738
Alignment:
Q  32 caattaatctaaaaagtcaaaattttcttataaataagatcggagagaatatta 85  Q
    |||| |||| |||||||||||  |||||||||||||||| ||||| ||||||||    
T  9077685 caatgaatcaaaaaagtcaaatatttcttataaataagaccggagggaatatta 9077738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 17705932 - 17706005
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataagatcggag 76  Q
    |||||| || ||| |||||| |||| || |||| |||  ||||||||||  |||||||||||||||||||||||    
T  17705932 tatattttaaacaagatacatcaatcacgcaatcaattcaaaaagtcaattttttcttataaataagatcggag 17706005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 12999847 - 12999899
Alignment:
Q  25 aattactcaattaatct-aaaaagtcaaaattttcttataaataagatcggag 76  Q
    ||||||||||| ||||| ||||||||||  ||| |||||||||||||||||||    
T  12999847 aattactcaatgaatctgaaaaagtcaacttttacttataaataagatcggag 12999899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 44518114 - 44518038
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataagatcggagaga 79  Q
    |||||| |||||| ||||||  ||||||||||| |||||||||||||||| |||||||||||||| ||||| |||||    
T  44518114 tatattttagacaagatacattaattactcaatgaatctaaaaagtcaaagttttcttataaataggatcgaagaga 44518038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 54537521 - 54537451
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataagatcg 73  Q
    ||||||||||||  |||||| |||||||||||| ||||| |||||||||| |||||||||||||| |||||    
T  54537521 tatattctagactagatacatcaattactcaatgaatcttaaaagtcaaatttttcttataaataggatcg 54537451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 43343519 - 43343440
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataagatcggagagaata 82  Q
    |||||||||||   ||||||  |||||| ||||||||||||||||||||  |||||||||||||| ||||||||| ||||    
T  43343519 tatattctagagtagatacattaattacgcaattaatctaaaaagtcaattttttcttataaatatgatcggagaaaata 43343440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 12747767 - 12747848
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataagatcggagagaatatt 84  Q
    ||||||||||||   ||||| ||||||||| || |||||||||| ||||  |||||||||||||| || |||||||| ||||    
T  12747767 tatattctagaccaaatacatcaattactcgatgaatctaaaaaatcaattttttcttataaataggaccggagagagtatt 12747848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 52865029 - 52864964
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataa 68  Q
    |||||| |||| | |||||| |||||||||||| |||||||||||| ||| |||||| ||||||||    
T  52865029 tatattttagataagatacatcaattactcaatgaatctaaaaagttaaatttttctcataaataa 52864964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 21662942 - 21662882
Alignment:
Q  25 aattactcaattaatctaaaaagtcaaaattttcttataaataagatcggagagaatatta 85  Q
    ||||||||||| |||||||||||||||  |||||||||||||| || ||||| || |||||    
T  21662942 aattactcaatgaatctaaaaagtcaactttttcttataaataggaccggagggagtatta 21662882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 43449038 - 43448967
Alignment:
Q  1 tttatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataagatc 72  Q
    |||||||  |||||| |||| | |||||||||||| |||||||||| ||||  |||||||||||||| ||||    
T  43449038 tttatatcatagacaagatatatcaattactcaatgaatctaaaaaatcaactttttcttataaataggatc 43448967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 16295463 - 16295401
Alignment:
Q  4 atattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaat 66  Q
    |||||||||||| |||||| |||||| ||||| ||||||| ||||  || |||||||||||||    
T  16295463 atattctagacaagatacatcaattattcaataaatctaagaagttgaagttttcttataaat 16295401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 43014535 - 43014485
Alignment:
Q  1 tttatattctagacatgatacaccaattactcaattaatctaaaaagtcaa 51  Q
    |||||||||||||| ||||||| |||||| ||||| ||| |||||||||||    
T  43014535 tttatattctagacctgatacatcaattattcaataaatataaaaagtcaa 43014485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 53357358 - 53357423
Alignment:
Q  3 tatattctagacatgatacaccaattactc-aattaatctaaaaagtcaaaattttcttataaata 67  Q
    ||||||||||||| |||| | ||||||||| ||| |||||||||||||||  |||||||| |||||    
T  53357358 tatattctagacaagatagatcaattactccaataaatctaaaaagtcaatgttttcttacaaata 53357423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 51723434 - 51723386
Alignment:
Q  25 aattactcaattaatctaaaaagtcaaaattttcttataaataagatcg 73  Q
    ||||||||||| |||||||||| ||||  |||||||||||||| |||||    
T  51723434 aattactcaatgaatctaaaaaatcaactttttcttataaataggatcg 51723386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 32457283 - 32457346
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaat 66  Q
    ||||||||||||| |||||| |||||||| ||| |||||||||||||||| |||||||||||||    
T  32457283 tatattctagacaagatacatcaattacttaatgaatctaaaaagtcaaatttttcttataaat 32457346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 33824428 - 33824360
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataagat 71  Q
    |||||| |||||| |||| | |||||||||||| ||| |||||||||||| ||||||||||||||||||    
T  33824428 tatattttagacaagatatatcaattactcaatgaatttaaaaagtcaaatttttcttataaataagat 33824360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 42698148 - 42698207
Alignment:
Q  17 gatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataagatcggag 76  Q
    |||||| |||||||||||| |||||||||||||||| |||| ||||||||| ||||||||    
T  42698148 gatacatcaattactcaatgaatctaaaaagtcaaattttttttataaatatgatcggag 42698207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 41153196 - 41153254
Alignment:
Q  18 atacaccaattactcaattaatctaaaaagtcaaaattttcttataaataagatcggag 76  Q
    ||||| |||||||||||| |||||||||||||||  |||||||||||||| ||||||||    
T  41153196 atacatcaattactcaatgaatctaaaaagtcaactttttcttataaataggatcggag 41153254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 43714050 - 43714116
Alignment:
Q  10 tagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataagatcggag 76  Q
    |||||| |||||| |||||||||| | ||||||||||||||||| ||||||||||||| || |||||    
T  43714050 tagacaagatacatcaattactcagtaaatctaaaaagtcaaaaatttcttataaataggaccggag 43714116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 30758797 - 30758853
Alignment:
Q  10 tagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaata 67  Q
    |||||| |||||| |||||||||||| |||||||||||||||| ||||||||||||||    
T  30758797 tagacaagatacatcaattactcaat-aatctaaaaagtcaaatttttcttataaata 30758853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 5559425 - 5559377
Alignment:
Q  19 tacaccaattactcaattaatctaaaaagtcaaaattttcttataaata 67  Q
    |||| |||||||||||| |||||||||||||||| ||||||||||||||    
T  5559425 tacatcaattactcaatgaatctaaaaagtcaaatttttcttataaata 5559377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 10205004 - 10204941
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaata 67  Q
    |||||| |||||| |||||| ||||| |||||| |||||||||||| ||||||||||||||||||    
T  10205004 tatattttagacaagatacatcaattgctcaatgaatctaaaaagt-aaaattttcttataaata 10204941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 29169926 - 29169986
Alignment:
Q  24 caattactcaattaatctaaaaagtcaaaattttcttataaataagatcggagagaatatt 84  Q
    |||||||||||| ||| |||||||||||| ||||||||||||||| | |||||||| ||||    
T  29169926 caattactcaataaatttaaaaagtcaaatttttcttataaataaaaccggagagattatt 29169986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 39445073 - 39445013
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttata 63  Q
    |||||||||||||  ||||| |||||||||||| ||||| |||||||||| ||||||||||    
T  39445073 tatattctagacaaaatacatcaattactcaatgaatcttaaaagtcaaatttttcttata 39445013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 5109419 - 5109358
Alignment:
Q  25 aattactcaattaatctaaaaagtcaaaattttcttataaataagatcggagagaatattat 86  Q
    ||||||||||| |||||||||||| ||  |||||||||||||| || |||||||| ||||||    
T  5109419 aattactcaatgaatctaaaaagttaactttttcttataaataggaccggagagagtattat 5109358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 9152449 - 9152522
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataagatcggag 76  Q
    |||||| |||||  |||||| |||||||||||| |||||||||||||||   |||||| ||||||||| |||||    
T  9152449 tatattttagactagatacatcaattactcaatgaatctaaaaagtcaattgtttcttgtaaataagaccggag 9152522  T

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Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 12962761 - 12962716
Alignment:
Q  25 aattactcaattaatctaaaaagtcaaaattttcttataaataaga 70  Q
    ||||||||||| |||||||||||||||  |||||||||||||||||    
T  12962761 aattactcaatgaatctaaaaagtcaactttttcttataaataaga 12962716  T

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Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 30761456 - 30761383
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataagatcggag 76  Q
    ||||||||||||| |||| |  ||||||||||| ||| ||||||||||||  ||||||||||||| || |||||    
T  30761456 tatattctagacaagataaattaattactcaatgaatgtaaaaagtcaaatgtttcttataaataggaccggag 30761383  T

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Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 38983069 - 38983133
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaata 67  Q
    ||||||||||||| |||||| ||||||| |||| |||||||||| ||||  |||| |||||||||    
T  38983069 tatattctagacaagatacatcaattacacaatgaatctaaaaaatcaacttttttttataaata 38983133  T

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Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 7943509 - 7943583
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaa-aattttcttataaataagatcggag 76  Q
    |||||| |||||| |||||| |||||| ||||| |||||||||||||||   |||||||||||||| || |||||    
T  7943509 tatattgtagacaagatacatcaattattcaatgaatctaaaaagtcaatttttttcttataaataggaccggag 7943583  T

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Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 11030276 - 11030326
Alignment:
Q  17 gatacaccaattactcaattaatctaaaaagtcaaaattttcttataaata 67  Q
    |||||| |||||||||||| |||||||||||| ||  ||||||||||||||    
T  11030276 gatacatcaattactcaatgaatctaaaaagttaattttttcttataaata 11030326  T

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Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 20555336 - 20555262
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataagatcggaga 77  Q
    ||||||||||||| |||||| |||||| |||||  ||||||||| | ||  |||||||||||||| || ||||||    
T  20555336 tatattctagacaagatacatcaattattcaatgtatctaaaaaattaattttttcttataaataggaccggaga 20555262  T

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Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 36881589 - 36881547
Alignment:
Q  25 aattactcaattaatctaaaaagtcaaaattttcttataaata 67  Q
    |||||||||||  ||||||||||||||| ||||||||||||||    
T  36881589 aattactcaatgtatctaaaaagtcaaatttttcttataaata 36881547  T

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Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 21424988 - 21425053
Alignment:
Q  19 tacaccaattactcaattaatctaaaaagtcaaaattttcttataaataagatcggagagaatatt 84  Q
    |||| |||||||||||||||||||||| |||||   ||||||||||  ||||| ||||||| ||||    
T  21424988 tacatcaattactcaattaatctaaaatgtcaatcgtttcttataataaagattggagagagtatt 21425053  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 8453664 - 8453738
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataagatcggaga 77  Q
    ||||||||||||| |||| | ||||||||||||  ||||||||| ||||| |||||||||||||| |||||||||    
T  8453664 tatattctagacaagatatatcaattactcaatgtatctaaaaaatcaaatttttcttataaataggatcggaga 8453738  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 43332635 - 43332574
Alignment:
Q  6 attctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaata 67  Q
    |||||||||| |||| |  ||||||||||| |||||||||||||||||||||||||||||||    
T  43332635 attctagacaagatatattaattactcaatgaatctaaaaagtcaaaattttcttataaata 43332574  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 5031542 - 5031469
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataagatcggag 76  Q
    ||||||||||||| |||||| |||||||| ||| ||| |||||||| ||| |||||||||||||| || |||||    
T  5031542 tatattctagacaagatacatcaattacttaatgaatttaaaaagttaaatttttcttataaataggaccggag 5031469  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 16448857 - 16448922
Alignment:
Q  1 tttatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaat 66  Q
    ||||||||||| | | |||||| |||||||||||| |||||||||||| ||| |||||||||||||    
T  16448857 tttatattctatataagatacatcaattactcaatgaatctaaaaagttaaatttttcttataaat 16448922  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 34711161 - 34711092
Alignment:
Q  1 tttatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataaga 70  Q
    |||||||| ||||||  ||||| |||||||||||| |||||||||||||||  |||| ||||||||||||    
T  34711161 tttatattttagacaaaatacatcaattactcaatgaatctaaaaagtcaatttttttttataaataaga 34711092  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 74
Target Start/End: Original strand, 15726850 - 15726900
Alignment:
Q  24 caattactcaattaatctaaaaagtcaaaattttcttataaataagatcgg 74  Q
    |||||||||||| |||||||||||||||  |||||||||||||| ||||||    
T  15726850 caattactcaatgaatctaaaaagtcaattttttcttataaataggatcgg 15726900  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 16008594 - 16008674
Alignment:
Q  4 atattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataagatcggagagaatatt 84  Q
    ||||||||||||  ||||| ||| |||||||| ||||||| |||||||| |||||||||| ||| || |||| ||| ||||    
T  16008594 atattctagacaaaatacatcaagtactcaataaatctaagaagtcaaatttttcttatagataggaccggatagagtatt 16008674  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 35149738 - 35149802
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaata 67  Q
    ||||||||||||| ||||||  |||||| |||| |||||||||| ||||  ||||||||||||||    
T  35149738 tatattctagacaagatacattaattacacaataaatctaaaaaatcaactttttcttataaata 35149802  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 42123036 - 42123084
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaa 51  Q
    ||||||||||||| ||||||  ||||||||||| |||||||||||||||    
T  42123036 tatattctagacaagatacattaattactcaatgaatctaaaaagtcaa 42123084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 7693125 - 7693167
Alignment:
Q  25 aattactcaattaatctaaaaagtcaaaattttcttataaata 67  Q
    ||||||||||| |||||||||||||||  ||||||||||||||    
T  7693125 aattactcaatgaatctaaaaagtcaattttttcttataaata 7693167  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 10184636 - 10184694
Alignment:
Q  18 atacaccaattactcaattaatctaaaaagtcaaaattttcttataaataagatcggag 76  Q
    ||||| |||||| ||||| ||||||||||||| |  |||||||||||||| ||||||||    
T  10184636 atacatcaattattcaatgaatctaaaaagtcgattttttcttataaatatgatcggag 10184694  T

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Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 24822822 - 24822876
Alignment:
Q  32 caattaatctaaaaagtcaaaattttcttataaataagatcggagagaatattat 86  Q
    |||| |||||||||||||||  |||||||||||||| || ||||| |||||||||    
T  24822822 caataaatctaaaaagtcaattttttcttataaataggaccggagggaatattat 24822876  T

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Target: scaffold0110 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 40283 - 40322
Alignment:
Q  25 aattactcaattaatctaaaaagtcaaaattttcttataa 64  Q
    ||||||||||| ||||||||||||||||| ||||||||||    
T  40283 aattactcaatgaatctaaaaagtcaaaagtttcttataa 40322  T

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Target: scaffold0110; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 1617 - 1685
Alignment:
Q  18 atacaccaattactcaattaatctaaaaagtcaaaattttcttataaataagatcggagagaatattat 86  Q
    ||||| |||||| ||||| |||||||||| | ||  ||||||||||||||||| ||||| || ||||||    
T  1617 atacatcaattattcaatgaatctaaaaaattaattttttcttataaataagaccggagggagtattat 1685  T

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Target: scaffold0136 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 16607 - 16541
Alignment:
Q  3 tatattctagacatgatacaccaattactcaattaatctaaaaagtcaaaattttcttataaataag 69  Q
    |||||||||| || ||| || |||||||||||| |||  ||||||| ||| ||||||||||||||||    
T  16607 tatattctagtcaagatgcatcaattactcaatgaattaaaaaagttaaatttttcttataaataag 16541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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