View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12370_low_11 (Length: 214)
Name: NF12370_low_11
Description: NF12370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12370_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 117; Significance: 9e-60; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 41697947 - 41698067
Alignment:
| Q |
18 |
tcatcaacaacaagaactgtagaacactcgtttgaggaatcatcttctaaacttttcaatccttctttcggaacaaatgcaagaatttccttcttgaaat |
117 |
Q |
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| T |
41697947 |
tcatcaacaacaagaactgtagaacactcatttgaggaatcatcttctaaacttttcaatccttctttcggaacaaatgcaagaatttccttcttgaaat |
41698046 |
T |
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| Q |
118 |
taataagtaaaatctgctcac |
138 |
Q |
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| T |
41698047 |
taataagtaaaatctgctcac |
41698067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 196
Target Start/End: Original strand, 41698097 - 41698128
Alignment:
| Q |
165 |
ttactattaattatacatacatgcaataacat |
196 |
Q |
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| T |
41698097 |
ttactattaattatacatacatgcaataacat |
41698128 |
T |
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