View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12370_low_2 (Length: 495)

Name: NF12370_low_2
Description: NF12370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12370_low_2
NF12370_low_2
[»] chr4 (14 HSPs)
chr4 (1-476)||(8122930-8123405)
chr4 (1-469)||(19804061-19804529)
chr4 (1-476)||(17129648-17130123)
chr4 (117-427)||(14036990-14037300)
chr4 (9-226)||(5119454-5119670)
chr4 (236-397)||(23167407-23167568)
chr4 (236-415)||(10652885-10653064)
chr4 (236-415)||(5239488-5239667)
chr4 (236-415)||(10867030-10867209)
chr4 (272-367)||(22176937-22177032)
chr4 (199-329)||(13988028-13988158)
chr4 (36-113)||(22643797-22643874)
chr4 (249-332)||(18254024-18254107)
chr4 (279-352)||(22643558-22643631)
[»] chr5 (10 HSPs)
chr5 (1-475)||(16990578-16991052)
chr5 (63-367)||(26472103-26472407)
chr5 (281-397)||(23957290-23957404)
chr5 (282-367)||(42139661-42139746)
chr5 (276-342)||(550848-550914)
chr5 (276-342)||(30281260-30281326)
chr5 (279-349)||(20324056-20324126)
chr5 (282-334)||(9846988-9847040)
chr5 (1-48)||(42139980-42140027)
chr5 (3-49)||(23903108-23903154)
[»] chr2 (4 HSPs)
chr2 (1-475)||(20483413-20483887)
chr2 (1-397)||(28017375-28017771)
chr2 (123-367)||(13130770-13131014)
chr2 (237-368)||(23680830-23680961)
[»] scaffold1416 (1 HSPs)
scaffold1416 (1-463)||(989-1451)
[»] chr6 (14 HSPs)
chr6 (1-397)||(6342346-6342742)
chr6 (147-340)||(6569483-6569676)
chr6 (272-352)||(34309863-34309943)
chr6 (199-332)||(26133478-26133611)
chr6 (289-397)||(20852088-20852196)
chr6 (236-415)||(14814946-14815125)
chr6 (273-340)||(28519701-28519768)
chr6 (276-342)||(4500327-4500393)
chr6 (276-342)||(15823879-15823945)
chr6 (276-334)||(26969791-26969849)
chr6 (1-130)||(28300232-28300361)
chr6 (1-130)||(28511712-28511841)
chr6 (279-365)||(34066951-34067037)
chr6 (282-397)||(14613457-14613572)
[»] chr8 (7 HSPs)
chr8 (63-415)||(19991190-19991542)
chr8 (1-418)||(15757329-15757747)
chr8 (206-332)||(15193146-15193272)
chr8 (282-367)||(21029629-21029714)
chr8 (279-349)||(44289991-44290061)
chr8 (278-342)||(44229706-44229770)
chr8 (1-48)||(21029348-21029395)
[»] chr3 (14 HSPs)
chr3 (63-367)||(55310135-55310439)
chr3 (9-367)||(8836200-8836558)
chr3 (206-332)||(53978164-53978290)
chr3 (199-332)||(31195115-31195248)
chr3 (199-332)||(52773065-52773198)
chr3 (272-367)||(12285490-12285585)
chr3 (272-369)||(7420040-7420137)
chr3 (216-297)||(13890029-13890110)
chr3 (282-342)||(17479399-17479459)
chr3 (276-367)||(4646052-4646143)
chr3 (272-367)||(19586706-19586801)
chr3 (42-106)||(12285751-12285815)
chr3 (60-112)||(19586494-19586546)
chr3 (234-342)||(23376554-23376662)
[»] chr1 (8 HSPs)
chr1 (237-368)||(37738781-37738912)
chr1 (206-332)||(49641009-49641135)
chr1 (236-415)||(2359705-2359884)
chr1 (272-367)||(52777870-52777965)
chr1 (236-349)||(32612425-32612538)
chr1 (1-48)||(6531180-6531227)
chr1 (234-340)||(6530888-6530994)
chr1 (42-112)||(52778125-52778195)
[»] scaffold0164 (1 HSPs)
scaffold0164 (206-332)||(27082-27208)
[»] scaffold0013 (1 HSPs)
scaffold0013 (199-332)||(248876-249009)
[»] chr7 (10 HSPs)
chr7 (282-367)||(18481656-18481741)
chr7 (276-368)||(3003557-3003649)
chr7 (282-342)||(38847313-38847373)
chr7 (246-332)||(16256555-16256641)
chr7 (276-342)||(26085259-26085325)
chr7 (276-342)||(26109046-26109112)
chr7 (1-48)||(38847032-38847079)
chr7 (276-334)||(8849891-8849949)
chr7 (1-48)||(18481375-18481422)
chr7 (282-367)||(19653589-19653674)
[»] scaffold1049 (1 HSPs)
scaffold1049 (276-352)||(2375-2451)
[»] scaffold0329 (1 HSPs)
scaffold0329 (272-367)||(11199-11294)
[»] scaffold0037 (1 HSPs)
scaffold0037 (279-349)||(53653-53723)
[»] scaffold0014 (1 HSPs)
scaffold0014 (199-329)||(95759-95889)
[»] scaffold0088 (1 HSPs)
scaffold0088 (240-425)||(52510-52695)
[»] scaffold0669 (1 HSPs)
scaffold0669 (7-112)||(358-463)


Alignment Details
Target: chr4 (Bit Score: 468; Significance: 0; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Original strand, 8122930 - 8123405
Alignment:
Q  1 ctttgaaacctgacttatatcctaagaaaacacactttctggctctaggttgttacttggttctatgagcttgaagtgtggaagcataacacaatcaacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  8122930 ctttgaaacctgacttatatcctaagaaaacacactttctggctctaggttgtaacttggttctatgagcttgaagtgtggaagcataacacaatcaacc 8123029  T
Q  101 aaacaccttaaaagaatgaacatcaggtaaagaattatatagaacttgatatggagatttgtgtttaagaaggggagtagagactctattgatgagaaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8123030 aaacaccttaaaagaatgaacatcaggtaaagaattatatagaacttgatatggagatttgtgtttaagaaggggagtagagactctattgatgagaaaa 8123129  T
Q  201 actgaatgcaaaacggcatatgaccagaaaatattaggaagtttagattggaaaagtaaagccctagcaaaattgaggatatgttgatgctttctttcca 300  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8123130 actgaatgcaaaacggcataggaccagaaaatattaggaagtttagattggaaaagtaaagccctagcaaaattgaggatatgttgatgctttctttcca 8123229  T
Q  301 ctctaccattttgttcaggggtctcaacacaagatctttgataaataataccctttgaagcataaaaagcagacaataaaaattcagggccattatctaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8123230 ctctaccattttgttcaggggtctcaacacaagatctttgataaataataccctttgaagcataaaaagcagacaataaaaattcagggccattatctaa 8123329  T
Q  401 tctgatgaatttaggtgtaatatgatggtgattttcaatcaattgtatgaaatttttgacatgtgaagatacttct 476  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8123330 tctgatgaatttaggtgtaatatgatggtgattttcaatcaattgtatgaaatttttgacatgtgaagatacttct 8123405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 469
Target Start/End: Original strand, 19804061 - 19804529
Alignment:
Q  1 ctttgaaacctgacttatatcctaagaaaacacactttctggctctaggttgttacttggttctatgagcttgaagtgtggaagcataacacaatcaacc 100  Q
    |||| ||||||||||| ||| | ||||||| |||||||||  | ||||  ||| | |||||||||||||||||||||||||||||||||||||| |||||    
T  19804061 ctttaaaacctgacttgtattccaagaaaatacactttctatccctagactgtaatttggttctatgagcttgaagtgtggaagcataacacaagcaacc 19804160  T
Q  101 aaacaccttaaaagaatgaacatcaggtaaagaattatatagaacttgatatggagatttgtgtttaagaaggggagtagagactctattgatgagaaaa 200  Q
    ||| ||||  ||||| |||| |||||||||||| ||||| ||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  19804161 aaagacctggaaagattgaatatcaggtaaagagttatagagaacctgatatggatatttgtgtttaagaaggggagtagatactctattgatgagaaaa 19804260  T
Q  201 actgaatgcaaaacggcatatgaccagaaaatattaggaagtttagattggaaaagtaaagccctagcaaaattgaggatatgttgatgctttctttcca 300  Q
    |||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  19804261 actgaatgcaaaactgtatatgaccagaaaatattagggagtttagattggaaaagtaaagccctaacaacattgaggatatgttgatgctttctttcca 19804360  T
Q  301 ctctaccattttgttcaggggtctcaacacaagatctttgataaataataccctttgaagcataaaaagcagacaataaaaattcagggccattatctaa 400  Q
    ||||||||||||||||||||||||||||||||||||| | || ||| || ||||||||||||||||||  || ||||| ||| ||||| ||||||||| |    
T  19804361 ctctaccattttgttcaggggtctcaacacaagatctctaatgaatgatgccctttgaagcataaaaaataggcaatagaaactcaggaccattatctga 19804460  T
Q  401 tctgatgaatttaggtgtaatatgatggtgattttcaatcaattgtatgaaatttttgacatgtgaaga 469  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  19804461 tctgatgaatttaggtgtaatgtgatggtgattttcaatcaattgtatgaaatttttgacctgtgaaga 19804529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 476
Target Start/End: Complemental strand, 17130123 - 17129648
Alignment:
Q  1 ctttgaaacctgacttatatcctaagaaaacacactttctggctctaggttgttacttggttctatgagcttgaagtgtggaagcataacacaatcaacc 100  Q
    |||| ||||||||||| || || |||||||| ||||||||| ||||||  ||  | || |||||||||||||| || || || ||||||||||| |||||    
T  17130123 ctttaaaacctgacttgtaacccaagaaaacccactttctgactctagactgcaattttgttctatgagcttgtagagtagatgcataacacaagcaacc 17130024  T
Q  101 aaacaccttaaaagaatgaacatcaggtaaagaattatatagaacttgatatggagatttgtgtttaagaaggggagtagagactctattgatgagaaaa 200  Q
    ||| ||  | || || ||||  ||||||||||||| ||| || || |||||||||||||||| ||||||||| ||||| || |||||||||||||  |||    
T  17130023 aaaaactctgaaggactgaatgtcaggtaaagaatcataaagtacctgatatggagatttgtatttaagaagaggagtggaaactctattgatgatgaaa 17129924  T
Q  201 actgaatgcaaaacggcatatgaccagaaaatattaggaagtttagattggaaaagtaaagccctagcaaaattgaggatatgttgatgctttctttcca 300  Q
    ||||||||||||||  |||| |||||||||||  |||| ||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||    
T  17129923 actgaatgcaaaactacataagaccagaaaatgctagggagtttagattggaaaagtaaagctctagcaacattgaggatatgttggtgctttctttcca 17129824  T
Q  301 ctctaccattttgttcaggggtctcaacacaagatctttgataaataataccctttgaagcataaaaagcagacaataaaaattcagggccattatctaa 400  Q
    ||||||||||||| ||| | |||| ||||||||||||||||| ||| ||||| || |||||||||||   || ||||| ||||||||||||||||||| |    
T  17129823 ctctaccattttgctcaagagtcttaacacaagatctttgatgaatgatacctttggaagcataaaatttaggcaatagaaattcagggccattatctga 17129724  T
Q  401 tctgatgaatttaggtgtaatatgatggtgattttcaatcaattgtatgaaatttttgacatgtgaagatacttct 476  Q
    ||| |||||||| |||||||| | ||| || |||||||||| ||| || ||||||||||| |||||||| ||||||    
T  17129723 tctaatgaattttggtgtaatgttatgatggttttcaatcagttggataaaatttttgacgtgtgaagaaacttct 17129648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 117 - 427
Target Start/End: Complemental strand, 14037300 - 14036990
Alignment:
Q  117 tgaacatcaggtaaagaattatatagaacttgatatggagatttgtgtttaagaaggggagtagagactctattgatgagaaaaactgaatgcaaaacgg 216  Q
    |||| ||||||||  |||| ||||| ||| | ||| ||||||||||| | |||||  ||||||| ||||||||| ||||| |||||||| |  ||||| |    
T  14037300 tgaatatcaggtagtgaatcatataaaacctaataaggagatttgtggtgaagaaaaggagtagggactctatttatgaggaaaactgagtataaaacag 14037201  T
Q  217 catatgaccagaaaatattaggaagtttagattggaaaagtaaagccctagcaaaattgaggatatgttgatgctttctttccactctaccattttgttc 316  Q
    |||| ||||||||||| |||||||||||  |||| ||| ||||||| ||||||| ||||||||||||||| |||||||| || || ||| ||||||||||    
T  14037200 cataagaccagaaaatgttaggaagtttgaattgaaaaggtaaagctctagcaacattgaggatatgttggtgctttctctcaaccctagcattttgttc 14037101  T
Q  317 aggggtctcaacacaagatctttgataaataataccctttgaagcataaaaagcagacaataaaaattcagggccattatctaatctgatgaatttaggt 416  Q
    ||| || |||||||| ||| |||||| ||||||||||||||||||||| ||  ||  ||  | ||||||||||||||||||| | ||||||||||||||     
T  14037100 aggagtttcaacacatgatttttgatgaataataccctttgaagcatagaattcaagcagaagaaattcagggccattatctgacctgatgaatttagga 14037001  T
Q  417 gtaatatgatg 427  Q
    |||||||||||    
T  14037000 gtaatatgatg 14036990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 9 - 226
Target Start/End: Complemental strand, 5119670 - 5119454
Alignment:
Q  9 cctgacttatatcctaagaaaacacactttctggctctaggttgttacttggttctatgagcttgaagtgtggaagcataacacaatcaaccaaacacct 108  Q
    |||||||| || |||||||||||| | ||||| ||||||| |||  | |  ||| ||||||| ||||| || ||||||||| |||| || ||||| || |    
T  5119670 cctgacttgtaccctaagaaaacagattttctagctctagattgcaattatgtt-tatgagcctgaagagtagaagcataagacaaacatccaaaaactt 5119572  T
Q  109 taaaagaatgaacatcaggtaaagaattatatagaacttgatatggagatttgtgtttaagaaggggagtagagactctattgatgagaaaaactgaatg 208  Q
    |||||||||  |||||| |||| |||| ||| | |||  |||| ||||||||||    ||| |  ||||||| |||||||||||| |||||||||| |||    
T  5119571 taaaagaattgacatcaagtaatgaatcatacaaaacacgataaggagatttgttgcgaaggataggagtagggactctattgataagaaaaactgcatg 5119472  T
Q  209 caaaacggcatatgacca 226  Q
     ||||| |||||||||||    
T  5119471 taaaactgcatatgacca 5119454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 236 - 397
Target Start/End: Original strand, 23167407 - 23167568
Alignment:
Q  236 aggaagtttagattggaaaagtaaagccctagcaaaattgaggatatgttgatgctttctttccactctaccattttgttcaggggtctcaacacaagat 335  Q
    |||||||||||| ||  |||||||||| ||  ||| |||||| || ||||| ||||||||||| ||||| ||||||||||  || ||||||||||||||     
T  23167407 aggaagtttagactgataaagtaaagctctcccaacattgagaatgtgttggtgctttctttcaactctcccattttgttggggagtctcaacacaagac 23167506  T
Q  336 ctttgataaataataccctttgaagcataaaaagcagacaataaaaattcagggccattatc 397  Q
     |||||| ||||||||| | ||||| ||| || |  || || |  |||||||||||||||||    
T  23167507 ttttgatgaataataccatgtgaagaatacaaggtggataacatgaattcagggccattatc 23167568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 236 - 415
Target Start/End: Complemental strand, 10653064 - 10652885
Alignment:
Q  236 aggaagtttagattggaaaagtaaagccctagcaaaattgaggatatgttgatgctttctttccactctaccattttgttcaggggtctcaacacaagat 335  Q
    |||||||||||| ||  |||| ||||| ||| ||| ||| |  || |||||||| |||||||| ||||||||||||||||  || || || |||||||||    
T  10653064 aggaagtttagactgataaagcaaagctctaccaacatttaaaatgtgttgatgttttctttcaactctaccattttgttggggagtttctacacaagat 10652965  T
Q  336 ctttgataaataataccctttgaagcataaaaagcagacaataaaaattcagggccattatctaatctgatgaatttagg 415  Q
     | || | |||||| || | |||||||||||||| ||  || |  |||||||||||||||||   |||||||||||||||    
T  10652964 ttctggtgaataatgccatgtgaagcataaaaagaaggtaacatgaattcagggccattatcagttctgatgaatttagg 10652885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 236 - 415
Target Start/End: Complemental strand, 5239667 - 5239488
Alignment:
Q  236 aggaagtttagattggaaaagtaaagccctagcaaaattgaggatatgttgatgctttctttccactctaccattttgttcaggggtctcaacacaagat 335  Q
    |||||||||||| ||  |||| ||||| ||| ||| ||| |  || |||||||| |||||||| ||||||||||||||||  || || || |||||||||    
T  5239667 aggaagtttagactgataaagcaaagctctaccaacatttaaaatgtgttgatgttttctttcaactctaccattttgttggggagtttctacacaagat 5239568  T
Q  336 ctttgataaataataccctttgaagcataaaaagcagacaataaaaattcagggccattatctaatctgatgaatttagg 415  Q
     | || | |||||| || | |||||||||||||| ||  || |  |||||||||||||||||   ||| |||||||||||    
T  5239567 ttctggtgaataatgccatgtgaagcataaaaagaaggtaacatgaattcagggccattatcagttctaatgaatttagg 5239488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 236 - 415
Target Start/End: Complemental strand, 10867209 - 10867030
Alignment:
Q  236 aggaagtttagattggaaaagtaaagccctagcaaaattgaggatatgttgatgctttctttccactctaccattttgttcaggggtctcaacacaagat 335  Q
    |||||||||||| ||  |||| ||||| ||| ||| ||| |  || |||||||| |||||||| ||||||||||||||||  || || || |||||||||    
T  10867209 aggaagtttagactgataaagcaaagctctaccaacatttaaaatgtgttgatgttttctttcaactctaccattttgttggggagtttctacacaagat 10867110  T
Q  336 ctttgataaataataccctttgaagcataaaaagcagacaataaaaattcagggccattatctaatctgatgaatttagg 415  Q
     | || | |||||| || | |||||||||||||| ||  || |  |||||||||||||||||   ||| |||||||||||    
T  10867109 ttctggtgaataatgccatgtgaagcataaaaagaaggtaacatgaattcagggccattatcagttctaatgaatttagg 10867030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 367
Target Start/End: Original strand, 22176937 - 22177032
Alignment:
Q  272 attgaggatatgttgatgctttctttccactctaccattttgttcaggggtctcaacacaagatctttgataaataataccctttgaagcataaaa 367  Q
    |||||| |||||||| || || ||||| ||||||||||||||||  || || |||||||||||| |||||| ||| ||||| | ||||||||||||    
T  22176937 attgagaatatgttggtgtttcctttctactctaccattttgttggggagtttcaacacaagatttttgatgaattataccatgtgaagcataaaa 22177032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 199 - 329
Target Start/End: Complemental strand, 13988158 - 13988028
Alignment:
Q  199 aaactgaatgcaaaacggcatatgaccagaaaatattaggaagtttagattggaaaagtaaagccctagcaaaattgaggatatgttgatgctttctttc 298  Q
    |||||| ||||||||| | ||| ||||||||    ||||| | ||| ||||||||||||||||| ||||| | ||| | ||| |||||||| ||||||||    
T  13988158 aaactgcatgcaaaactgaataagaccagaactgtttaggtaattttgattggaaaagtaaagctctagctacattcaagatgtgttgatgttttctttc 13988059  T
Q  299 cactctaccattttgttcaggggtctcaaca 329  Q
     ||||| ||||||||||  || |||||||||    
T  13988058 tactctcccattttgttggggagtctcaaca 13988028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 22643874 - 22643797
Alignment:
Q  36 tttctggctctaggttgttacttggttctatgagcttgaagtgtggaagcataacacaatcaaccaaacaccttaaaa 113  Q
    ||||| ||||||| |||| | |||||||| |||  |||||| |||||||||||||| || |||||||| |||||||||    
T  22643874 tttctagctctagattgtaatttggttctgtgattttgaagagtggaagcataacataagcaaccaaaaaccttaaaa 22643797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 332
Target Start/End: Complemental strand, 18254107 - 18254024
Alignment:
Q  249 tggaaaagtaaagccctagcaaaattgaggatatgttgatgctttctttccactctaccattttgttcaggggtctcaacacaa 332  Q
    |||||||| | ||| ||||||| ||| || |||||||||||||| ||||| ||||| ||||||||||  || || |||||||||    
T  18254107 tggaaaagcatagctctagcaacattaagaatatgttgatgcttcctttcaactctcccattttgttggggagtttcaacacaa 18254024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 352
Target Start/End: Complemental strand, 22643631 - 22643558
Alignment:
Q  279 atatgttgatgctttctttccactctaccattttgttcaggggtctcaacacaagatctttgataaataatacc 352  Q
    |||||||||||||||||||| || || ||||||||||  || || |||||||| ||| | |||| |||||||||    
T  22643631 atatgttgatgctttctttcaaccctcccattttgttggggagtttcaacacatgatttgtgatgaataatacc 22643558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 167; Significance: 3e-89; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 1 - 475
Target Start/End: Original strand, 16990578 - 16991052
Alignment:
Q  1 ctttgaaacctgacttatatcctaagaaaacacactttctggctctaggttgttacttggttctatgagcttgaagtgtggaagcataacacaatcaacc 100  Q
    ||||||| || ||||| || |||||||||| ||||||||||||||||| |||| | || |||||||||||||||||||| ||||||||||| |  |||||    
T  16990578 ctttgaatccagacttgtaacctaagaaaatacactttctggctctagattgtaattttgttctatgagcttgaagtgtagaagcataacaaaggcaacc 16990677  T
Q  101 aaacaccttaaaagaatgaacatcaggtaaagaattatatagaacttgatatggagatttgtgtttaagaaggggagtagagactctattgatgagaaaa 200  Q
    ||| || || |||||||||| |||||| || |||| ||||| ||| ||||| |||||||| ||||| ||||| ||||| || |||||||| |||||||||    
T  16990678 aaaaactttgaaagaatgaatatcaggcaatgaatcatataaaacatgataaggagatttatgtttgagaagaggagttgaaactctatttatgagaaaa 16990777  T
Q  201 actgaatgcaaaacggcatatgaccagaaaatattaggaagtttagattggaaaagtaaagccctagcaaaattgaggatatgttgatgctttctttcca 300  Q
    |||||||||||||| |||||||||||||||| ||| |||||||| ||||| || |  ||||| ||||||| |||||| || |||||||| ||||| || |    
T  16990778 actgaatgcaaaacagcatatgaccagaaaacattgggaagtttggattgaaacaacaaagctctagcaacattgagaatgtgttgatgttttctctcta 16990877  T
Q  301 ctctaccattttgttcaggggtctcaacacaagatctttgataaataataccctttgaagcataaaaagcagacaataaaaattcagggccattatctaa 400  Q
    ||||| ||||||||||||| || || ||||||| |||||||| ||| || || ||||||||||||||| | |  || || |||||||| ||||||||       
T  16990878 ctctagcattttgttcaggtgtttctacacaagctctttgatgaatgatgccttttgaagcataaaaatctggtaaaaagaattcaggaccattatcagt 16990977  T
Q  401 tctgatgaatttaggtgtaatatgatggtgattttcaatcaattgtatgaaatttttgacatgtgaagatacttc 475  Q
     || |||||||| || |||| |||||| ||||| |  ||||  || ||||||||||| ||||||||||| |||||    
T  16990978 ccttatgaattttggagtaacatgatgatgattatggatcaggtgaatgaaatttttaacatgtgaagaaacttc 16991052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 63 - 367
Target Start/End: Complemental strand, 26472407 - 26472103
Alignment:
Q  63 ctatgagcttgaagtgtggaagcataacacaatcaaccaaacaccttaaaagaatgaacatcaggtaaagaattatatagaacttgatatggagatttgt 162  Q
    ||||||||  |||| || |||||| ||||||  |||||||| || || || ||||| |  |||||||| |||| ||| |||| |||||| |||||||| |    
T  26472407 ctatgagcaagaagagtagaagcaaaacacagacaaccaaaaactttgaaggaatgtatgtcaggtaaggaatcataaagaagttgataaggagattttt 26472308  T
Q  163 gtttaagaaggggagtagagactctattgatgagaaaaactgaatgcaaaacggcatatgaccagaaaatattaggaagtttagattggaaaagtaaagc 262  Q
    |||||||||| || ||||  |||||||| || |  ||||| | ||| | ||| ||||||||||| ||||| || ||||||||||||||||||||||||||    
T  26472307 gtttaagaagaggggtaggcactctatttattaagaaaacagcatgaataacagcatatgaccaaaaaattttgggaagtttagattggaaaagtaaagc 26472208  T
Q  263 cctagcaaaattgaggatatgttgatgctttctttccactctaccattttgttcaggggtctcaacacaagatctttgataaataataccctttgaagca 362  Q
     ||||||| ||| || |||||||||||||||||||| ||||||||||||||||  || || |||||||||||| |||| |  || || ||||| ||||||    
T  26472207 tctagcaacattaagaatatgttgatgctttctttcaactctaccattttgttggggagtttcaacacaagatttttggtgtatgattcccttagaagca 26472108  T
Q  363 taaaa 367  Q
    |||||    
T  26472107 taaaa 26472103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 281 - 397
Target Start/End: Complemental strand, 23957404 - 23957290
Alignment:
Q  281 atgttgatgctttctttccactctaccattttgttcaggggtctcaacacaagatctttgataaataataccctttgaagcataaaaagcagacaataaa 380  Q
    |||||| || ||||| || ||||| ||||||||||  || |||||||||||||| || |||| | |||| ||||||||||||||||| | ||| | ||||    
T  23957404 atgttggtgttttctctcaactctcccattttgtt--ggagtctcaacacaagacctatgatgagtaatgccctttgaagcataaaaggaagatagtaaa 23957307  T
Q  381 aattcagggccattatc 397  Q
    |||||||||||||||||    
T  23957306 aattcagggccattatc 23957290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 282 - 367
Target Start/End: Complemental strand, 42139746 - 42139661
Alignment:
Q  282 tgttgatgctttctttccactctaccattttgttcaggggtctcaacacaagatctttgataaataataccctttgaagcataaaa 367  Q
    ||||||||||||||||||||||| ||||||||||  ||||| ||||||||||| |||||||  | |||||| || || ||||||||    
T  42139746 tgttgatgctttctttccactcttccattttgttggggggtttcaacacaagaactttgatgcaaaatacctttagaggcataaaa 42139661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 276 - 342
Target Start/End: Original strand, 550848 - 550914
Alignment:
Q  276 aggatatgttgatgctttctttccactctaccattttgttcaggggtctcaacacaagatctttgat 342  Q
    ||||||||||||||||| ||||| ||  |||||||||||| ||| |||||||||||||| |||||||    
T  550848 aggatatgttgatgcttcctttctacaataccattttgttgaggagtctcaacacaagacctttgat 550914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 276 - 342
Target Start/End: Original strand, 30281260 - 30281326
Alignment:
Q  276 aggatatgttgatgctttctttccactctaccattttgttcaggggtctcaacacaagatctttgat 342  Q
    ||||||||||||||||| ||||| ||  |||||||||||| ||| |||||||||||||| |||||||    
T  30281260 aggatatgttgatgcttcctttctacaataccattttgttgaggagtctcaacacaagacctttgat 30281326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 349
Target Start/End: Original strand, 20324056 - 20324126
Alignment:
Q  279 atatgttgatgctttctttccactctaccattttgttcaggggtctcaacacaagatctttgataaataat 349  Q
    ||||||||||| || || || |||||||||||||||| ||| || |||||||||||| |||||| ||||||    
T  20324056 atatgttgatgtttcctctcaactctaccattttgttgaggagtttcaacacaagatttttgatgaataat 20324126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 282 - 334
Target Start/End: Original strand, 9846988 - 9847040
Alignment:
Q  282 tgttgatgctttctttccactctaccattttgttcaggggtctcaacacaaga 334  Q
    ||||| |||||||| || || |||||||||||||||||||| |||||||||||    
T  9846988 tgttggtgctttctctctaccctaccattttgttcaggggtttcaacacaaga 9847040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 42140027 - 42139980
Alignment:
Q  1 ctttgaaacctgacttatatcctaagaaaacacactttctggctctag 48  Q
    ||||||||||| |||| ||||||||||||||  |||||||||||||||    
T  42140027 ctttgaaacctaacttgtatcctaagaaaactgactttctggctctag 42139980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 23903108 - 23903154
Alignment:
Q  3 ttgaaacctgacttatatcctaagaaaacacactttctggctctagg 49  Q
    |||||||||||||| || |||||||||  ||||||||||||||||||    
T  23903108 ttgaaacctgacttgtagcctaagaaacaacactttctggctctagg 23903154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 163; Significance: 7e-87; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 1 - 475
Target Start/End: Original strand, 20483413 - 20483887
Alignment:
Q  1 ctttgaaacctgacttatatcctaagaaaacacactttctggctctaggttgttacttggttctatgagcttgaagtgtggaagcataacacaatcaacc 100  Q
    ||||||| || ||||| || |||||||||| ||||||||||||||||| |||| | || |||||||||||||||||||| ||||||||||| |  |||||    
T  20483413 ctttgaatccagacttgtaacctaagaaaatacactttctggctctagattgtaattttgttctatgagcttgaagtgtagaagcataacaaaggcaacc 20483512  T
Q  101 aaacaccttaaaagaatgaacatcaggtaaagaattatatagaacttgatatggagatttgtgtttaagaaggggagtagagactctattgatgagaaaa 200  Q
    ||| || ||||||||||||| |||||| || |||| ||||| ||| ||||| |||||||| ||||| ||||| ||||| || |||||||| |||||||||    
T  20483513 aaaaactttaaaagaatgaatatcaggcaatgaatcatataaaacatgataaggagatttatgtttgagaagaggagttgaaactctatttatgagaaaa 20483612  T
Q  201 actgaatgcaaaacggcatatgaccagaaaatattaggaagtttagattggaaaagtaaagccctagcaaaattgaggatatgttgatgctttctttcca 300  Q
    ||| |||||||||| |||||||||||||||| ||| |||||||| ||||| || |  ||||| ||||||| |||||| || |||||||| ||||| || |    
T  20483613 actaaatgcaaaacagcatatgaccagaaaacattgggaagtttggattgaaacaacaaagctctagcaacattgagaatgtgttgatgttttctctcta 20483712  T
Q  301 ctctaccattttgttcaggggtctcaacacaagatctttgataaataataccctttgaagcataaaaagcagacaataaaaattcagggccattatctaa 400  Q
    ||||| ||||||||||||| || || ||||||| |||||||| ||| || || |||||| ||||||||   |  || || |||||||| ||||||||       
T  20483713 ctctagcattttgttcaggtgtttctacacaagctctttgatgaatgatgccttttgaaacataaaaatatggtaaaaagaattcaggaccattatcagt 20483812  T
Q  401 tctgatgaatttaggtgtaatatgatggtgattttcaatcaattgtatgaaatttttgacatgtgaagatacttc 475  Q
     || |||||||| || |||| |||||| ||||| |  ||||| || ||||||||||| ||||||||||| |||||    
T  20483813 ccttatgaattttggagtaacatgatgatgattatggatcaagtgaatgaaatttttaacatgtgaagaaacttc 20483887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 28017771 - 28017375
Alignment:
Q  1 ctttgaaacctgacttatatcctaagaaaacacactttctggctctaggttgttacttggttctatgagcttgaagtgtggaagcataacacaatcaacc 100  Q
    ||||||| || ||||| || |||||||||| ||||||||||||||||| |||| | || ||| |||||||||||||||| ||||||||||| |  |||||    
T  28017771 ctttgaatccagacttgtaacctaagaaaatacactttctggctctagattgtaattttgttatatgagcttgaagtgtagaagcataacaaaggcaacc 28017672  T
Q  101 aaacaccttaaaagaatgaacatcaggtaaagaattatatagaacttgatatggagatttgtgtttaagaaggggagtagagactctattgatgagaaaa 200  Q
    ||| || ||||||||||||| |||| | || |||| ||||| ||| ||||| |||||||| ||||| ||||| ||||| || |||||||| |||||||||    
T  28017671 aaaaactttaaaagaatgaatatcaagcaatgaatcatataaaacatgatagggagatttatgtttgagaagaggagttgaaactctatttatgagaaaa 28017572  T
Q  201 actgaatgcaaaacggcatatgaccagaaaatattaggaagtttagattggaaaagtaaagccctagcaaaattgaggatatgttgatgctttctttcca 300  Q
    |||||||||||||| |||||||||||||||| ||| |||||||| ||||| || |  ||||| ||||||| |||||| || ||| | || ||||| || |    
T  28017571 actgaatgcaaaacagcatatgaccagaaaacattgggaagtttggattgaaacaacaaagctctagcaacattgagaatgtgtcggtgttttctctcta 28017472  T
Q  301 ctctaccattttgttcaggggtctcaacacaagatctttgataaataataccctttgaagcataaaaagcagacaataaaaattcagggccattatc 397  Q
    ||||| ||||||||||||| || || ||||||| |||||||| ||| || || ||||||||||||||| |||  || || |||||||| ||||||||    
T  28017471 ctctagcattttgttcaggtgtttctacacaagctctttgatgaatgatgccttttgaagcataaaaatcaggtaaaaagaattcaggaccattatc 28017375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 123 - 367
Target Start/End: Complemental strand, 13131014 - 13130770
Alignment:
Q  123 tcaggtaaagaattatatagaacttgatatggagatttgtgtttaagaaggggagtagagactctattgatgagaaaaactgaatgcaaaacggcatatg 222  Q
    ||||||||||||| ||| |||| |||||| |||||||| ||||||| ||| || ||||  ||| |||| || |  ||||| | ||| | ||| |||||||    
T  13131014 tcaggtaaagaatcataaagaagttgataaggagatttttgtttaaaaagaggggtaggcactttatttattaagaaaacagcatgaataacagcatatg 13130915  T
Q  223 accagaaaatattaggaagtttagattggaaaagtaaagccctagcaaaattgaggatatgttgatgctttctttccactctaccattttgttcaggggt 322  Q
    |||| |||| ||| |||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||| ||||||||||||||||  || ||    
T  13130914 accaaaaaaaatttggaagtttagattggaaaagtaaagctctagcaacattaaggatatgttgatgctttctttcaactctaccattttgttggggagt 13130815  T
Q  323 ctcaacacaagatctttgataaataataccctttgaagcataaaa 367  Q
     |||||||| ||| |||| |  || || ||||| |||||||||||    
T  13130814 ttcaacacatgatttttggtgtatgattcccttagaagcataaaa 13130770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 237 - 368
Target Start/End: Complemental strand, 23680961 - 23680830
Alignment:
Q  237 ggaagtttagattggaaaagtaaagccctagcaaaattgaggatatgttgatgctttctttccactctaccattttgttcaggggtctcaacacaagatc 336  Q
    |||||||||||||| || | |||||| || || | ||| |||||||||||||| |||||||| |||||  ||||||||| ||| || |||||||||||||    
T  23680961 ggaagtttagattgaaacaataaagctcttgccacattaaggatatgttgatgttttctttcaactctggcattttgttgaggtgtttcaacacaagatc 23680862  T
Q  337 tttgataaataataccctttgaagcataaaaa 368  Q
    | |||| |||||| || || ||||||||||||    
T  23680861 tatgatgaataatgcctttagaagcataaaaa 23680830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1416 (Bit Score: 155; Significance: 4e-82; HSPs: 1)
Name: scaffold1416
Description:

Target: scaffold1416; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 1 - 463
Target Start/End: Original strand, 989 - 1451
Alignment:
Q  1 ctttgaaacctgacttatatcctaagaaaacacactttctggctctaggttgttacttggttctatgagcttgaagtgtggaagcataacacaatcaacc 100  Q
    ||||||| || ||||| || |||||||||| ||||||||||||||||| |||| | || ||| |||||||||||||||| ||||||||||| |  |||||    
T  989 ctttgaatccagacttgtaacctaagaaaatacactttctggctctagattgtaattttgttatatgagcttgaagtgtagaagcataacaaaggcaacc 1088  T
Q  101 aaacaccttaaaagaatgaacatcaggtaaagaattatatagaacttgatatggagatttgtgtttaagaaggggagtagagactctattgatgagaaaa 200  Q
    ||| || ||||||||||||| |||| | || |||| ||||| ||| ||||| |||||||| ||||| ||||| ||||| || |||||||| |||||||||    
T  1089 aaaaactttaaaagaatgaatatcaagcaatgaatcatataaaacatgatagggagatttatgtttgagaagaggagttgaaactctatttatgagaaaa 1188  T
Q  201 actgaatgcaaaacggcatatgaccagaaaatattaggaagtttagattggaaaagtaaagccctagcaaaattgaggatatgttgatgctttctttcca 300  Q
    |||||||||||||| |||||||||||||||| ||| |||||||| ||||| || |  ||||| ||||||| |||||| || ||| | || ||||| || |    
T  1189 actgaatgcaaaacagcatatgaccagaaaacattgggaagtttggattgaaacaacaaagctctagcaacattgagaatgtgtaggtgttttctctcta 1288  T
Q  301 ctctaccattttgttcaggggtctcaacacaagatctttgataaataataccctttgaagcataaaaagcagacaataaaaattcagggccattatctaa 400  Q
    ||||| ||||||||||||| || || ||||||| |||||||| ||| || || ||||||||||||||| |||  || || |||||||| ||||||||       
T  1289 ctctagcattttgttcaggtgtttctacacaagctctttgatgaatgatgccttttgaagcataaaaatcaggtaaaaagaattcaggaccattatcagt 1388  T
Q  401 tctgatgaatttaggtgtaatatgatggtgattttcaatcaattgtatgaaatttttgacatg 463  Q
     || |||||||| || |||| |||||| ||||| |  ||||| || ||||||||||| |||||    
T  1389 ccttatgaattttggggtaacatgatgatgattatggatcaagtgaatgaaatttttaacatg 1451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 149; Significance: 2e-78; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 6342742 - 6342346
Alignment:
Q  1 ctttgaaacctgacttatatcctaagaaaacacactttctggctctaggttgttacttggttctatgagcttgaagtgtggaagcataacacaatcaacc 100  Q
    ||||||| || ||||| || |||||||||| ||||||||||||||||| |||| | || ||| |||||||||||||||| ||||||||||| |  |||||    
T  6342742 ctttgaatccagacttgtaacctaagaaaatacactttctggctctagattgtaattttgttatatgagcttgaagtgtagaagcataacaaaggcaacc 6342643  T
Q  101 aaacaccttaaaagaatgaacatcaggtaaagaattatatagaacttgatatggagatttgtgtttaagaaggggagtagagactctattgatgagaaaa 200  Q
    ||| || ||||||||||||| |||| | || |||| ||||| ||| ||||| |||||||| ||||| ||||| ||||| || |||||||| |||||||||    
T  6342642 aaaaactttaaaagaatgaatatcaagcaatgaatcatataaaacatgatagggagatttatgtttgagaagaggagttgaaactctatttatgagaaaa 6342543  T
Q  201 actgaatgcaaaacggcatatgaccagaaaatattaggaagtttagattggaaaagtaaagccctagcaaaattgaggatatgttgatgctttctttcca 300  Q
    |||||||||||||| |||||||||||||||| ||| |||||||| ||||| || |  ||||| ||||||| |||||| || ||| | || ||||| || |    
T  6342542 actgaatgcaaaacagcatatgaccagaaaacattgggaagtttggattgaaacaacaaagctctagcaacattgagaatgtgtcggtgttttctctcta 6342443  T
Q  301 ctctaccattttgttcaggggtctcaacacaagatctttgataaataataccctttgaagcataaaaagcagacaataaaaattcagggccattatc 397  Q
    ||||| ||||||||||||| || || ||||||| |||||||| ||| || || ||||||||||||||| |||  || || |||||||| ||||||||    
T  6342442 ctctagcattttgttcaggtgtttctacacaagctctttgatgaatgatgccttttgaagcataaaaatcaggtaaaaagaattcaggaccattatc 6342346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 147 - 340
Target Start/End: Original strand, 6569483 - 6569676
Alignment:
Q  147 tgatatggagatttgtgtttaagaaggggagtagagactctattgatgagaaaaactgaatgcaaaacggcatatgaccagaaaatattaggaagtttag 246  Q
    ||||| || |||| || ||| ||||||||||||| ||||||||||||||| |||||   ||| ||||| ||||| |||||  |  | || |||||||| |    
T  6569483 tgataaggtgattggttttttagaaggggagtagtgactctattgatgaggaaaacaacatgtaaaactgcataagaccaatatgttttgggaagtttgg 6569582  T
Q  247 attggaaaagtaaagccctagcaaaattgaggatatgttgatgctttctttccactctaccattttgttcaggggtctcaacacaagatctttg 340  Q
    ||||  |||||||||| ||  | | |||||| |||| |||||| ||||| || ||||| ||||||||||  ||||| |||||| ||||||||||    
T  6569583 attgacaaagtaaagctcttcctacattgagaatatattgatgttttctctctactctcccattttgttggggggtttcaacataagatctttg 6569676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 272 - 352
Target Start/End: Complemental strand, 34309943 - 34309863
Alignment:
Q  272 attgaggatatgttgatgctttctttccactctaccattttgttcaggggtctcaacacaagatctttgataaataatacc 352  Q
    ||||||||||||||||||||| ||||| ||  |||||||||||| ||| |||||||||||||| ||||||| ||| |||||    
T  34309943 attgaggatatgttgatgcttcctttctacaataccattttgttgaggagtctcaacacaagacctttgatgaatgatacc 34309863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 199 - 332
Target Start/End: Complemental strand, 26133611 - 26133478
Alignment:
Q  199 aaactgaatgcaaaacggcatatgaccagaaaatattaggaagtttagattggaaaagtaaagccctagcaaaattgaggatatgttgatgctttctttc 298  Q
    |||||| ||||||||| | ||| ||||||||    ||||| | ||| ||||||||||||||||| ||||| | ||| | ||| |||||||| ||||||||    
T  26133611 aaactgcatgcaaaactgaataagaccagaactgtttaggtaattttgattggaaaagtaaagctctagctacattcaagatgtgttgatgttttctttc 26133512  T
Q  299 cactctaccattttgttcaggggtctcaacacaa 332  Q
     ||||| ||||||||||  || ||||||||||||    
T  26133511 tactctcccattttgttggggagtctcaacacaa 26133478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 289 - 397
Target Start/End: Original strand, 20852088 - 20852196
Alignment:
Q  289 gctttctttccactctaccattttgttcaggggtctcaacacaagatctttgataaataataccctttgaagcataaaaagcagacaataaaaattcagg 388  Q
    ||||||| || ||||| ||||||| ||  || || |||||||||||||| ||||   |||||||||| ||||||||||| | ||| | ||||||||||||    
T  20852088 gctttctctcaactcttccattttattggggagtttcaacacaagatctatgatgtgtaatacccttagaagcataaaaggaagagagtaaaaattcagg 20852187  T
Q  389 gccattatc 397  Q
    |||||||||    
T  20852188 gccattatc 20852196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 236 - 415
Target Start/End: Complemental strand, 14815125 - 14814946
Alignment:
Q  236 aggaagtttagattggaaaagtaaagccctagcaaaattgaggatatgttgatgctttctttccactctaccattttgttcaggggtctcaacacaagat 335  Q
    |||||||||||| ||  |||| ||||| ||| ||| ||| |  || |||||||| |||||||| ||||||||||||||||  || || || |||||||||    
T  14815125 aggaagtttagactgataaagcaaagctctaccaacatttaaaatgtgttgatgttttctttcaactctaccattttgttggggagtttctacacaagat 14815026  T
Q  336 ctttgataaataataccctttgaagcataaaaagcagacaataaaaattcagggccattatctaatctgatgaatttagg 415  Q
     | || | |||||| || | |||||||||||||| ||  || |  |||||||||||||||||   ||| |||||||||||    
T  14815025 ttctggtgaataatgccatgtgaagcataaaaagaaggtaacatgaattcagggccattatcagttctaatgaatttagg 14814946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 273 - 340
Target Start/End: Original strand, 28519701 - 28519768
Alignment:
Q  273 ttgaggatatgttgatgctttctttccactctaccattttgttcaggggtctcaacacaagatctttg 340  Q
    ||||| || ||||||||||||||||||||||| ||||||||||  ||||| ||||||||||| |||||    
T  28519701 ttgagtatgtgttgatgctttctttccactctcccattttgttggggggtttcaacacaagacctttg 28519768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 276 - 342
Target Start/End: Complemental strand, 4500393 - 4500327
Alignment:
Q  276 aggatatgttgatgctttctttccactctaccattttgttcaggggtctcaacacaagatctttgat 342  Q
    ||||||||||||||||| ||||| ||  |||||||||||| ||| |||||||||||||| |||||||    
T  4500393 aggatatgttgatgcttcctttctacaataccattttgttgaggagtctcaacacaagacctttgat 4500327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 276 - 342
Target Start/End: Complemental strand, 15823945 - 15823879
Alignment:
Q  276 aggatatgttgatgctttctttccactctaccattttgttcaggggtctcaacacaagatctttgat 342  Q
    ||||||||||||||||| ||||| ||  |||||||||||| ||| |||||||||||||| |||||||    
T  15823945 aggatatgttgatgcttcctttctacaataccattttgttgaggagtctcaacacaagacctttgat 15823879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 276 - 334
Target Start/End: Complemental strand, 26969849 - 26969791
Alignment:
Q  276 aggatatgttgatgctttctttccactctaccattttgttcaggggtctcaacacaaga 334  Q
    ||||||||||| |||| ||||||||| ||||||||||||| ||| ||||||||||||||    
T  26969849 aggatatgttggtgctgtctttccaccctaccattttgttgaggtgtctcaacacaaga 26969791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 28300232 - 28300361
Alignment:
Q  1 ctttgaaacctgacttatatcctaagaaaacacactttctggctctaggttgttacttggttctatgagcttgaagtgtggaagcataacacaatcaacc 100  Q
    ||||||||||| |||| ||||||||||||||| ||||| | |||||| | ||| | || |||| |||||||||||| || |||  |||||| || |||||    
T  28300232 ctttgaaacctaacttgtatcctaagaaaacatactttatagctctatgctgtaatttagttccatgagcttgaagagttgaataataacataaacaacc 28300331  T
Q  101 aaacaccttaaaagaatgaacatcaggtaa 130  Q
    ||| || || ||||| ||||  ||||||||    
T  28300332 aaaaactttgaaagattgaaggtcaggtaa 28300361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 28511841 - 28511712
Alignment:
Q  1 ctttgaaacctgacttatatcctaagaaaacacactttctggctctaggttgttacttggttctatgagcttgaagtgtggaagcataacacaatcaacc 100  Q
    ||||||||||| |||| ||||||||||||||| ||||| | |||||| | ||| | || |||| |||||||||||| || |||  |||||| || |||||    
T  28511841 ctttgaaacctaacttgtatcctaagaaaacatactttatagctctatgctgtaatttagttccatgagcttgaagagttgaataataacataaacaacc 28511742  T
Q  101 aaacaccttaaaagaatgaacatcaggtaa 130  Q
    ||| || || ||||| ||||  ||||||||    
T  28511741 aaaaactttgaaagattgaaggtcaggtaa 28511712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 365
Target Start/End: Complemental strand, 34067037 - 34066951
Alignment:
Q  279 atatgttgatgctttctttccactctaccattttgttcaggggtctcaacacaagatctttgataaataataccctttgaagcataa 365  Q
    |||||||| || ||||| || || ||||||||||||| ||| ||||||||||||||||| |||| || ||| || || |||||||||    
T  34067037 atatgttggtgttttctctcaaccctaccattttgttgaggtgtctcaacacaagatctatgatgaaaaatgcctttggaagcataa 34066951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 397
Target Start/End: Complemental strand, 14613572 - 14613457
Alignment:
Q  282 tgttgatgctttctttccactctaccattttgttcaggggtctcaacacaagatctttgataaataataccctttgaagcataaaaagcagacaataaaa 381  Q
    |||||||| |||||||| ||||||||||| ||||  || || |||||||| || || ||||  ||||| ||||| ||||||||||| | |   | |||||    
T  14613572 tgttgatgttttctttcaactctaccattctgttgtggtgtttcaacacatgacctatgatgtataatgcccttggaagcataaaaggaatgtagtaaaa 14613473  T
Q  382 attcagggccattatc 397  Q
    ||||||| ||||||||    
T  14613472 attcaggtccattatc 14613457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 2e-47; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 63 - 415
Target Start/End: Complemental strand, 19991542 - 19991190
Alignment:
Q  63 ctatgagcttgaagtgtggaagcataacacaatcaaccaaacaccttaaaagaatgaacatcaggtaaagaattatatagaacttgatatggagatttgt 162  Q
    |||||||||||||| || ||||||||||| || |||||||| || || || ||||  | ||||| ||||  ||| || |  || ||||| ||||||| ||    
T  19991542 ctatgagcttgaagagtagaagcataacataaacaaccaaaaactttgaatgaatttatatcagataaaatattgtacaagacatgataaggagattggt 19991443  T
Q  163 gtttaagaaggggagtagagactctattgatgagaaaaactgaatgcaaaacggcatatgaccagaaaatattaggaagtttagattggaaaagtaaagc 262  Q
     || |||||  ||||||| ||||||||| ||||| |||||   ||| |||||  |||| ||||| || | || ||||||||||||||| ||||| | |||    
T  19991442 tttgaagaataggagtagggactctattaatgaggaaaacaacatgaaaaacaacataggaccaaaagaaatgaggaagtttagattgaaaaaggagagc 19991343  T
Q  263 cctagcaaaattgaggatatgttgatgctttctttccactctaccattttgttcaggggtctcaacacaagatctttgataaataataccctttgaagca 362  Q
    |||||||| ||| | ||||||||||||||| ||||| ||| |||||||||||||||| |||||||||||||| ||||||| || |||||| |  || |||    
T  19991342 cctagcaacatttaagatatgttgatgcttcctttcaactataccattttgttcaggagtctcaacacaagacctttgatgaagaataccatgagaggca 19991243  T
Q  363 taaaaagcagacaataaaaattcagggccattatctaatctgatgaatttagg 415  Q
    |||||| |||| || |||||||| |||||||||||  |||| |||| ||||||    
T  19991242 taaaaatcagataacaaaaattctgggccattatcagatcttatgattttagg 19991190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 15757747 - 15757329
Alignment:
Q  1 ctttgaaacctgacttatatcctaagaaaacacactttctggctctaggttgttacttggttctatgagcttgaagtgtggaagcataacacaatcaacc 100  Q
    ||||| |||||||||| ||||||||||||||  | ||||| ||||| |  ||| | || |||||||||  |||||| ||||| |||||||| |  || ||    
T  15757747 ctttgtaacctgacttgtatcctaagaaaactgattttctagctctggactgtaattttgttctatgactttgaagggtggatgcataacaaagacagcc 15757648  T
Q  101 aaacaccttaaaagaatgaacatcaggtaaagaattatatagaacttgatatggagatttgtgtttaagaaggggagtagagactctattgatgagaaaa 200  Q
    ||| || || || || | ||  ||||||| ||  ||||| ||||||||||| || || |||| ||  ||||   ||||||  |||||||||||||||||     
T  15757647 aaagactttgaatgagttaatgtcaggtagagttttataaagaacttgataaggtgacttgttttcgagaacaagagtaggaactctattgatgagaaag 15757548  T
Q  201 actgaatgcaaaacggcatatgaccagaaaatattaggaagtttagattggaaaagtaa-agccctagcaaaattgaggatatgttgatgctttctttcc 299  Q
    |||| ||| |||||  |||| ||||| |||| |||||||||||||   || ||||  || ||| ||||||| ||| |  ||||||||||||||||| ||     
T  15757547 actgcatgtaaaacaacataggaccaaaaaaaattaggaagtttaagctgaaaaaagaagagctctagcaacatttaaaatatgttgatgctttctctct 15757448  T
Q  300 actctaccattttgttcaggggtctcaacacaagatctttgataaataataccctttgaagcataaaaagcagacaataaaaattcagggccattatcta 399  Q
    ||||||||||| |||| ||| || ||||||||||| ||||||| ||| |||||||  || ||||| |||||||| || |  ||| || ||||||||||      
T  15757447 actctaccattatgttgaggagtttcaacacaagacctttgatgaatgataccctgagatgcatagaaagcagataaaaggaatacatggccattatcag 15757348  T
Q  400 atctgatgaatttaggtgt 418  Q
    |||| |||| ||| |||||    
T  15757347 atctaatgattttgggtgt 15757329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 206 - 332
Target Start/End: Complemental strand, 15193272 - 15193146
Alignment:
Q  206 atgcaaaacggcatatgaccagaaaatattaggaagtttagattggaaaagtaaagccctagcaaaattgaggatatgttgatgctttctttccactcta 305  Q
    ||||||||| | ||| ||||||||||| || |||||||| ||||||||||| | ||| ||||||| ||| || |||||||||||||| ||||| |||||     
T  15193272 atgcaaaacagaataagaccagaaaatttttggaagttttgattggaaaaggagagctctagcaacattaagaatatgttgatgcttcctttcaactctc 15193173  T
Q  306 ccattttgttcaggggtctcaacacaa 332  Q
    ||||||||||  || || |||||||||    
T  15193172 ccattttgttggggagtttcaacacaa 15193146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 282 - 367
Target Start/End: Original strand, 21029629 - 21029714
Alignment:
Q  282 tgttgatgctttctttccactctaccattttgttcaggggtctcaacacaagatctttgataaataataccctttgaagcataaaa 367  Q
    ||||||||||||||||||||||| ||||||||||  ||||| ||||||||||| |||||||  | |||||| || || ||||||||    
T  21029629 tgttgatgctttctttccactcttccattttgttggggggtttcaacacaagacctttgatgcaaaatacctttagaggcataaaa 21029714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 279 - 349
Target Start/End: Original strand, 44289991 - 44290061
Alignment:
Q  279 atatgttgatgctttctttccactctaccattttgttcaggggtctcaacacaagatctttgataaataat 349  Q
    |||||||| ||||||||||||||||| |||||||||| ||| | ||||||||| ||| |||||| ||||||    
T  44289991 atatgttggtgctttctttccactctgccattttgttgaggcgactcaacacaggatttttgatgaataat 44290061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 342
Target Start/End: Complemental strand, 44229770 - 44229706
Alignment:
Q  278 gatatgttgatgctttctttccactctaccattttgttcaggggtctcaacacaagatctttgat 342  Q
    |||||| ||||| |||||||| ||||||||||| |||| |||||| |||||||||||| ||||||    
T  44229770 gatatgatgatgttttctttcaactctaccattctgttgaggggtttcaacacaagatttttgat 44229706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 21029348 - 21029395
Alignment:
Q  1 ctttgaaacctgacttatatcctaagaaaacacactttctggctctag 48  Q
    ||||||||||| |||| ||||||||||||||  |||||||||||||||    
T  21029348 ctttgaaacctaacttgtatcctaagaaaactgactttctggctctag 21029395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 4e-45; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 63 - 367
Target Start/End: Complemental strand, 55310439 - 55310135
Alignment:
Q  63 ctatgagcttgaagtgtggaagcataacacaatcaaccaaacaccttaaaagaatgaacatcaggtaaagaattatatagaacttgatatggagatttgt 162  Q
    ||||||||  |||| || |||||| ||||||  |||||||| || || || ||||| |  |||||||| |||| ||| |||| |||||| |||||||| |    
T  55310439 ctatgagcaagaagagtagaagcaaaacacagacaaccaaaaactttgaaggaatgtatgtcaggtaaggaatcataaagaagttgataaggagattttt 55310340  T
Q  163 gtttaagaaggggagtagagactctattgatgagaaaaactgaatgcaaaacggcatatgaccagaaaatattaggaagtttagattggaaaagtaaagc 262  Q
    |||||||||| || ||||  |||||||| || |  ||||| | ||| | ||| ||||||||||| ||||| || ||||||||||||||||||||||||||    
T  55310339 gtttaagaagaggggtaggcactctatttattaagaaaacagcatgaataacagcatatgaccaaaaaattttgggaagtttagattggaaaagtaaagc 55310240  T
Q  263 cctagcaaaattgaggatatgttgatgctttctttccactctaccattttgttcaggggtctcaacacaagatctttgataaataataccctttgaagca 362  Q
     ||||||| ||| || |||| ||||||||||||||| ||||||||||||||||  || || |||||||||||| |||| |  || || ||||| ||||||    
T  55310239 tctagcaacattaagaatatattgatgctttctttcaactctaccattttgttggggagtttcaacacaagatttttggtgtatgattcccttagaagca 55310140  T
Q  363 taaaa 367  Q
    |||||    
T  55310139 taaaa 55310135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 9 - 367
Target Start/End: Complemental strand, 8836558 - 8836200
Alignment:
Q  9 cctgacttatatcctaagaaaacacactttctggctctaggttgttacttggttctatgagcttgaagtgtggaagcataacacaatcaaccaaacacct 108  Q
    |||||||| || || ||||||||| | ||||| ||||||| |||  | || |  ||||||||  |||| || |||||| ||||||  |||||||| || |    
T  8836558 cctgacttgtaacccaagaaaacagattttcttgctctagattgaaattttgacctatgagcaagaagagtagaagcaaaacacagacaaccaaaaactt 8836459  T
Q  109 taaaagaatgaacatcaggtaaagaattatatagaacttgatatggagatttgtgtttaagaaggggagtagagactctattgatgagaaaaactgaatg 208  Q
    | || ||||| |  |||||||| |||| ||| |||| ||| || |||||||| |||| |||||| || ||||  |||||||| || | |||||| | |||    
T  8836458 tgaaggaatgtatgtcaggtaaggaatcataaagaagttggtaaggagatttttgttgaagaagaggggtaggcactctatttattaaaaaaacagcatg 8836359  T
Q  209 caaaacggcatatgaccagaaaatattaggaagtttagattggaaaagtaaagccctagcaaaattgaggatatgttgatgctttctttccactctacca 308  Q
     | ||  ||||||||||| ||||  || |||||||||||||||||||||||||| ||||||| ||| || |||||||||||||||||||| |||||||||    
T  8836358 aataatagcatatgaccaaaaaaatttgggaagtttagattggaaaagtaaagctctagcaacattaagaatatgttgatgctttctttcaactctacca 8836259  T
Q  309 ttttgttcaggggtctcaacacaagatctttgataaataataccctttgaagcataaaa 367  Q
    |||||||  || || |||||||||||| |||| |  || || ||||| |||||||||||    
T  8836258 ttttgttggggagtttcaacacaagatttttggtgtatgattcccttagaagcataaaa 8836200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 206 - 332
Target Start/End: Complemental strand, 53978290 - 53978164
Alignment:
Q  206 atgcaaaacggcatatgaccagaaaatattaggaagtttagattggaaaagtaaagccctagcaaaattgaggatatgttgatgctttctttccactcta 305  Q
    ||||||||| | ||| ||||||||||  || |||||||| ||||||||||| | ||| ||||||| ||| || |||||||||||||| ||||| |||||     
T  53978290 atgcaaaacagaataagaccagaaaacttttggaagttttgattggaaaagcagagctctagcaacattaagaatatgttgatgcttcctttcaactctc 53978191  T
Q  306 ccattttgttcaggggtctcaacacaa 332  Q
    ||||||||||  || || |||||||||    
T  53978190 ccattttgttggggagtttcaacacaa 53978164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 199 - 332
Target Start/End: Original strand, 31195115 - 31195248
Alignment:
Q  199 aaactgaatgcaaaacggcatatgaccagaaaatattaggaagtttagattggaaaagtaaagccctagcaaaattgaggatatgttgatgctttctttc 298  Q
    |||||| ||||||||| | ||| ||||||||    ||||| | ||| ||||||||||||||||| ||||| | ||| | ||| |||||||| ||||||||    
T  31195115 aaactgcatgcaaaactgaataagaccagaactgtttaggtaattttgattggaaaagtaaagctctagctacattcaagatgtgttgatgttttctttc 31195214  T
Q  299 cactctaccattttgttcaggggtctcaacacaa 332  Q
     ||||| ||||||||||  || ||||||||||||    
T  31195215 tactctcccattttgttggggagtctcaacacaa 31195248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 199 - 332
Target Start/End: Complemental strand, 52773198 - 52773065
Alignment:
Q  199 aaactgaatgcaaaacggcatatgaccagaaaatattaggaagtttagattggaaaagtaaagccctagcaaaattgaggatatgttgatgctttctttc 298  Q
    |||||| ||||||||| | ||| ||||||||    ||||| | ||| ||||||||||||||||| ||||| | ||| | ||| |||||||| ||||||||    
T  52773198 aaactgcatgcaaaactgaataagaccagaactgtttaggtaattttgattggaaaagtaaagctctagctacattcaagatgtgttgatgttttctttc 52773099  T
Q  299 cactctaccattttgttcaggggtctcaacacaa 332  Q
     ||||| ||||||||||  || ||||||||||||    
T  52773098 tactctcccattttgttggggagtctcaacacaa 52773065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 272 - 367
Target Start/End: Complemental strand, 12285585 - 12285490
Alignment:
Q  272 attgaggatatgttgatgctttctttccactctaccattttgttcaggggtctcaacacaagatctttgataaataataccctttgaagcataaaa 367  Q
    |||||| |||||||| || || ||||| ||||||||||||||||  || || | |||||||||| |||||| ||| ||||| | ||||||||||||    
T  12285585 attgagaatatgttggtgtttcctttctactctaccattttgttggggagttttaacacaagatttttgatgaattataccatgtgaagcataaaa 12285490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 272 - 369
Target Start/End: Complemental strand, 7420137 - 7420040
Alignment:
Q  272 attgaggatatgttgatgctttctttccactctaccattttgttcaggggtctcaacacaagatctttgataaataataccctttgaagcataaaaag 369  Q
    ||||||||| ||||| || || ||||| || |||||||||||||  || || |||||||||||| |||| | ||| ||||| | ||||||||||||||    
T  7420137 attgaggatgtgttggtgtttcctttctaccctaccattttgttggggagtttcaacacaagatttttggtgaattataccatgtgaagcataaaaag 7420040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 297
Target Start/End: Complemental strand, 13890110 - 13890029
Alignment:
Q  216 gcatatgaccagaaaatattaggaagtttagattggaaaagtaaagccctagcaaaattgaggatatgttgatgctttcttt 297  Q
    ||||||||||| |||| |||||||||||||||||| ||||| | ||| ||  ||| ||| || |||||||| ||||||||||    
T  13890110 gcatatgaccaaaaaaaattaggaagtttagattgaaaaagaagagctcttccaacattaagaatatgttggtgctttcttt 13890029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 282 - 342
Target Start/End: Original strand, 17479399 - 17479459
Alignment:
Q  282 tgttgatgctttctttccactctaccattttgttcaggggtctcaacacaagatctttgat 342  Q
    ||||||||||||||||| ||||| ||||||||||  ||||| |||||| |||| |||||||    
T  17479399 tgttgatgctttctttctactctcccattttgttggggggtttcaacataagacctttgat 17479459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 367
Target Start/End: Original strand, 4646052 - 4646143
Alignment:
Q  276 aggatatgttgatgctttctttccactctaccattttgttcaggggtctcaacacaagatctttgataaataataccctttgaagcataaaa 367  Q
    ||||||||||| | |||||| |  || ||| ||| ||||| ||||||||||||||||||  | |||| || ||||||||| |||||||||||    
T  4646052 aggatatgttggtactttctcttaaccctaacatgttgttgaggggtctcaacacaagacttatgatgaaaaatacccttagaagcataaaa 4646143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 367
Target Start/End: Original strand, 19586706 - 19586801
Alignment:
Q  272 attgaggatatgttgatgctttctttccactctaccattttgttcaggggtctcaacacaagatctttgataaataataccctttgaagcataaaa 367  Q
    |||||| || ||||| || || ||||| ||||||||||||||||  || || |||||||||||| |||||| ||| || || | ||||||||||||    
T  19586706 attgagaatgtgttggtgtttcctttctactctaccattttgttggggagtttcaacacaagatttttgatgaattattccatgtgaagcataaaa 19586801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 12285815 - 12285751
Alignment:
Q  42 gctctaggttgttacttggttctatgagcttgaagtgtggaagcataacacaatcaaccaaacac 106  Q
    |||||||||||  | || ||||| |||| |||||| || |||||||||||||| |||||||||||    
T  12285815 gctctaggttgcaattttgttctgtgagattgaagagtagaagcataacacaaacaaccaaacac 12285751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 19586494 - 19586546
Alignment:
Q  60 gttctatgagcttgaagtgtggaagcataacacaatcaaccaaacaccttaaa 112  Q
    ||||| |||| |||||| || |||||||||||||| ||||||||||| |||||    
T  19586494 gttctgtgagattgaagagtagaagcataacacaagcaaccaaacactttaaa 19586546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 342
Target Start/End: Original strand, 23376554 - 23376662
Alignment:
Q  234 ttaggaagtttagattggaaaagtaaagccctagcaaaattgaggatatgttgatgctttctttccactctaccattttgttcaggggtctcaacacaag 333  Q
    ||||| ||||||||||| || ||||| || ||||||| ||| | ||| |||||||| ||||| || || || ||  ||||||  || |||||| ||||||    
T  23376554 ttagggagtttagattgaaatagtaaggctctagcaacatttaagatgtgttgatgttttctctctaccctgcctatttgttggggagtctcagcacaag 23376653  T
Q  334 atctttgat 342  Q
    |||||||||    
T  23376654 atctttgat 23376662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 237 - 368
Target Start/End: Original strand, 37738781 - 37738912
Alignment:
Q  237 ggaagtttagattggaaaagtaaagccctagcaaaattgaggatatgttgatgctttctttccactctaccattttgttcaggggtctcaacacaagatc 336  Q
    |||||||||||||| || | |||||| || || | ||| ||||||||||| || |||||||| |||||  ||||||||| ||| || |||||||||||||    
T  37738781 ggaagtttagattgaaacaataaagctcttgccacattaaggatatgttggtgttttctttcaactctggcattttgttgaggtgtttcaacacaagatc 37738880  T
Q  337 tttgataaataataccctttgaagcataaaaa 368  Q
    | |||| |||||| || || ||||||||||||    
T  37738881 tatgatgaataatgcctttagaagcataaaaa 37738912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 206 - 332
Target Start/End: Original strand, 49641009 - 49641135
Alignment:
Q  206 atgcaaaacggcatatgaccagaaaatattaggaagtttagattggaaaagtaaagccctagcaaaattgaggatatgttgatgctttctttccactcta 305  Q
    ||||||||| | ||| ||||||||||  || |||||||| ||||||||||| | ||| ||||||| ||| || |||||||||||||| ||||| |||||     
T  49641009 atgcaaaacagaataagaccagaaaacttttggaagttttgattggaaaagcagagctctagcaacattaagaatatgttgatgcttcctttcaactctc 49641108  T
Q  306 ccattttgttcaggggtctcaacacaa 332  Q
    ||||||||||  || || |||||||||    
T  49641109 ccattttgttggggagtttcaacacaa 49641135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 236 - 415
Target Start/End: Complemental strand, 2359884 - 2359705
Alignment:
Q  236 aggaagtttagattggaaaagtaaagccctagcaaaattgaggatatgttgatgctttctttccactctaccattttgttcaggggtctcaacacaagat 335  Q
    |||||||||||| ||  |||| ||||| ||| ||| ||| |  || |||||||| |||||||| ||||||||||||||||  || || || |||||||||    
T  2359884 aggaagtttagactgataaagcaaagctctaccaacatttaaaatgtgttgatgttttctttcaactctaccattttgttggggagtttctacacaagat 2359785  T
Q  336 ctttgataaataataccctttgaagcataaaaagcagacaataaaaattcagggccattatctaatctgatgaatttagg 415  Q
     | || | |||||| || | |||||||||||||| ||  || |  |||||||||||||||||   ||| |||||||||||    
T  2359784 ttctggtgaataatgccatgtgaagcataaaaagaaggtaacatgaattcagggccattatcagttctaatgaatttagg 2359705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 367
Target Start/End: Complemental strand, 52777965 - 52777870
Alignment:
Q  272 attgaggatatgttgatgctttctttccactctaccattttgttcaggggtctcaacacaagatctttgataaataataccctttgaagcataaaa 367  Q
    |||||| |||||||| || || ||||| ||||||||||||||||  || || |||||||||||| |||||| ||| ||||| | ||||||||||||    
T  52777965 attgagaatatgttggtgtttcctttctactctaccattttgttggggagtttcaacacaagatttttgatgaattataccatgtgaagcataaaa 52777870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 236 - 349
Target Start/End: Original strand, 32612425 - 32612538
Alignment:
Q  236 aggaagtttagattggaaaagtaaagccctagcaaaattgaggatatgttgatgctttctttccactctaccattttgttcaggggtctcaacacaagat 335  Q
    |||| ||||||||||||| | |||||||||| ||| ||| || ||||| ||||| || || || ||||| |||||||||| ||| || |||||||| ||     
T  32612425 aggacgtttagattggaacaataaagccctaccaacattaagaatatgctgatgtttcctctcaactctgccattttgttgaggagtttcaacacatgac 32612524  T
Q  336 ctttgataaataat 349  Q
     |||||| ||||||    
T  32612525 ttttgatgaataat 32612538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 6531227 - 6531180
Alignment:
Q  1 ctttgaaacctgacttatatcctaagaaaacacactttctggctctag 48  Q
    |||||||||||||||| ||||| ||||||||| | |||||||||||||    
T  6531227 ctttgaaacctgacttgtatcccaagaaaacaaattttctggctctag 6531180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 340
Target Start/End: Complemental strand, 6530994 - 6530888
Alignment:
Q  234 ttaggaagtttagattggaaaagtaaagccctagcaaaattgaggatatgttgatgctttctttccactctaccattttgttcaggggtctcaacacaag 333  Q
    |||||||||||||| || || | || ||| ||||||| ||| |  ||||||||||| |||||||  || |||||||||||||  || || |||||||| |    
T  6530994 ttaggaagtttagactgaaacaatagagctctagcaacatttaatatatgttgatgttttcttttaaccctaccattttgttggggagtttcaacacatg 6530895  T
Q  334 atctttg 340  Q
    |||||||    
T  6530894 atctttg 6530888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 112
Target Start/End: Complemental strand, 52778195 - 52778125
Alignment:
Q  42 gctctaggttgttacttggttctatgagcttgaagtgtggaagcataacacaatcaaccaaacaccttaaa 112  Q
    |||||||||||  | || ||||| |||| |||||| || |||||||||||||| ||||||||||| |||||    
T  52778195 gctctaggttgcaattttgttctgtgagattgaagagtagaagcataacacaagcaaccaaacactttaaa 52778125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 206 - 332
Target Start/End: Original strand, 27082 - 27208
Alignment:
Q  206 atgcaaaacggcatatgaccagaaaatattaggaagtttagattggaaaagtaaagccctagcaaaattgaggatatgttgatgctttctttccactcta 305  Q
    ||||||||| | ||| ||||||||||  || |||||||| ||||||||||| | ||| ||||||| ||| || |||||||||||||| ||||| |||||     
T  27082 atgcaaaacagaataagaccagaaaacttttggaagttttgattggaaaagcagagctctagcaacattaagaatatgttgatgcttcctttcaactctc 27181  T
Q  306 ccattttgttcaggggtctcaacacaa 332  Q
    ||||||||||  || || |||||||||    
T  27182 ccattttgttggggagtttcaacacaa 27208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 199 - 332
Target Start/End: Original strand, 248876 - 249009
Alignment:
Q  199 aaactgaatgcaaaacggcatatgaccagaaaatattaggaagtttagattggaaaagtaaagccctagcaaaattgaggatatgttgatgctttctttc 298  Q
    |||||| ||||||||| | ||| ||||||||    ||||| | ||| ||||||||||||||||| ||||| | ||| | ||| |||||||| ||||||||    
T  248876 aaactgcatgcaaaactgaataagaccagaactgtttaggtaattttgattggaaaagtaaagctctagctacattcaagatgtgttgatgttttctttc 248975  T
Q  299 cactctaccattttgttcaggggtctcaacacaa 332  Q
     ||||| ||||||||||  || ||||||||||||    
T  248976 tactctcccattttgttggggagtctcaacacaa 249009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 282 - 367
Target Start/End: Original strand, 18481656 - 18481741
Alignment:
Q  282 tgttgatgctttctttccactctaccattttgttcaggggtctcaacacaagatctttgataaataataccctttgaagcataaaa 367  Q
    ||||||||||||||||||||||| ||||||||||  ||||| ||||||||||| |||||||  | |||||| || || ||||||||    
T  18481656 tgttgatgctttctttccactcttccattttgttggggggtttcaacacaagacctttgatgcaaaatacctttagaggcataaaa 18481741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 276 - 368
Target Start/End: Complemental strand, 3003649 - 3003557
Alignment:
Q  276 aggatatgttgatgctttctttccactctaccattttgttcaggggtctcaacacaagatctttgataaataataccctttgaagcataaaaa 368  Q
    ||||||||||| || |||||||| |||||  ||||||||| ||| || |||||||||||||| |||| |||||| || || ||||||||||||    
T  3003649 aggatatgttggtgttttctttcaactctggcattttgttgaggtgtttcaacacaagatctatgatgaataatgcctttagaagcataaaaa 3003557  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 282 - 342
Target Start/End: Original strand, 38847313 - 38847373
Alignment:
Q  282 tgttgatgctttctttccactctaccattttgttcaggggtctcaacacaagatctttgat 342  Q
    |||||||| |||||||||||||| |||||||||| ||| |||||||||||||| |||||||    
T  38847313 tgttgatgttttctttccactctcccattttgttgaggtgtctcaacacaagacctttgat 38847373  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 246 - 332
Target Start/End: Complemental strand, 16256641 - 16256555
Alignment:
Q  246 gattggaaaagtaaagccctagcaaaattgaggatatgttgatgctttctttccactctaccattttgttcaggggtctcaacacaa 332  Q
    ||||||||||||||||| ||||| | ||| | ||| |||||||| |||||||| ||||| ||||||||||  || ||||||||||||    
T  16256641 gattggaaaagtaaagctctagctacattcaagatgtgttgatgttttctttctactctcccattttgttggggagtctcaacacaa 16256555  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 276 - 342
Target Start/End: Original strand, 26085259 - 26085325
Alignment:
Q  276 aggatatgttgatgctttctttccactctaccattttgttcaggggtctcaacacaagatctttgat 342  Q
    ||||||||||||||||| ||||| ||  |||||||||||| ||| |||||||||||||| |||||||    
T  26085259 aggatatgttgatgcttcctttctacaataccattttgttgaggagtctcaacacaagacctttgat 26085325  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 276 - 342
Target Start/End: Original strand, 26109046 - 26109112
Alignment:
Q  276 aggatatgttgatgctttctttccactctaccattttgttcaggggtctcaacacaagatctttgat 342  Q
    ||||||||||||||||| ||||| ||  |||||||||||| ||| |||||||||||||| |||||||    
T  26109046 aggatatgttgatgcttcctttctacaataccattttgttgaggagtctcaacacaagacctttgat 26109112  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 38847032 - 38847079
Alignment:
Q  1 ctttgaaacctgacttatatcctaagaaaacacactttctggctctag 48  Q
    |||||||||||||||| ||||| ||||||||| |||||||||||||||    
T  38847032 ctttgaaacctgacttgtatcccaagaaaacagactttctggctctag 38847079  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 334
Target Start/End: Complemental strand, 8849949 - 8849891
Alignment:
Q  276 aggatatgttgatgctttctttccactctaccattttgttcaggggtctcaacacaaga 334  Q
    ||||||||||| || |||||||| || ||||||||||||| | ||||||||||||||||    
T  8849949 aggatatgttggtgttttctttcaaccctaccattttgttgatgggtctcaacacaaga 8849891  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 18481375 - 18481422
Alignment:
Q  1 ctttgaaacctgacttatatcctaagaaaacacactttctggctctag 48  Q
    ||||||||||| |||| ||||||||||||||  |||||||||||||||    
T  18481375 ctttgaaacctaacttgtatcctaagaaaactgactttctggctctag 18481422  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 367
Target Start/End: Complemental strand, 19653674 - 19653589
Alignment:
Q  282 tgttgatgctttctttccactctaccattttgttcaggggtctcaacacaagatctttgataaataataccctttgaagcataaaa 367  Q
    |||||||| |||||||| ||||||||||| ||||  || || |||||||| || || ||||  ||||| ||||| |||||||||||    
T  19653674 tgttgatgttttctttcaactctaccattctgttgtggtgtttcaacacatgacctatgatgtataatgcccttggaagcataaaa 19653589  T

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Target: scaffold1049 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold1049
Description:

Target: scaffold1049; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 276 - 352
Target Start/End: Original strand, 2375 - 2451
Alignment:
Q  276 aggatatgttgatgctttctttccactctaccattttgttcaggggtctcaacacaagatctttgataaataatacc 352  Q
    ||||||||||||||||| ||||| ||  |||||||||||| ||| |||||||||||||| ||||||| ||| |||||    
T  2375 aggatatgttgatgcttcctttctacaataccattttgttgaggagtctcaacacaagacctttgatgaatgatacc 2451  T

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Target: scaffold0329 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 367
Target Start/End: Complemental strand, 11294 - 11199
Alignment:
Q  272 attgaggatatgttgatgctttctttccactctaccattttgttcaggggtctcaacacaagatctttgataaataataccctttgaagcataaaa 367  Q
    |||||| |||||||| || || ||||| ||||||||||||||||  || || |||||||||||| |||||| ||| ||||| | ||||||||||||    
T  11294 attgagaatatgttggtgtttcctttctactctaccattttgttggggagtttcaacacaagatttttgatgaattataccatgtgaagcataaaa 11199  T

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Target: scaffold0037 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 279 - 349
Target Start/End: Complemental strand, 53723 - 53653
Alignment:
Q  279 atatgttgatgctttctttccactctaccattttgttcaggggtctcaacacaagatctttgataaataat 349  Q
    |||||||| ||||||||||||||||| |||||||||| ||| | ||||||||| ||| |||||| ||||||    
T  53723 atatgttggtgctttctttccactctgccattttgttgaggcgactcaacacaggatttttgatgaataat 53653  T

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Target: scaffold0014 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 199 - 329
Target Start/End: Original strand, 95759 - 95889
Alignment:
Q  199 aaactgaatgcaaaacggcatatgaccagaaaatattaggaagtttagattggaaaagtaaagccctagcaaaattgaggatatgttgatgctttctttc 298  Q
    |||||| ||||||||| | ||| ||||||||    ||||| | ||| ||||||||||||||||| ||||| | ||| | ||| |||||||| ||||||||    
T  95759 aaactgcatgcaaaactgaataagaccagaactgtttaggtaattttgattggaaaagtaaagctctagctacattcaagatgtgttgatgttttctttc 95858  T
Q  299 cactctaccattttgttcaggggtctcaaca 329  Q
     ||||| ||||||||||  || |||||||||    
T  95859 tactctcccattttgttggggagtctcaaca 95889  T

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Target: scaffold0088 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 240 - 425
Target Start/End: Complemental strand, 52695 - 52510
Alignment:
Q  240 agtttagattggaaaagtaaagccctagcaaaattgaggatatgttgatgctttctttccactctaccattttgttcaggggtctcaacacaagatcttt 339  Q
    ||||||||||| |||||||| || ||  | | |||||||||||||| ||| || ||||| ||  ||||||| |||| ||| || ||  |||||||| |||    
T  52695 agtttagattgaaaaagtaaggctctgcctacattgaggatatgtttatgtttcctttctaccgtaccattatgttgaggagtttctgcacaagattttt 52596  T
Q  340 gataaataataccctttgaagcataaaaagcagacaataaaaattcagggccattatctaatctgatgaatttaggtgtaatatga 425  Q
    | |||| |||||| |  |||||||||||   ||| |  || ||||||||||||||||||  ||||||| |||| |||||| |||||    
T  52595 ggtaaagaataccatgagaagcataaaatttagatagcaagaattcagggccattatctgttctgatgtatttgggtgtagtatga 52510  T

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Target: scaffold0669 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0669
Description:

Target: scaffold0669; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 112
Target Start/End: Complemental strand, 463 - 358
Alignment:
Q  7 aacctgacttatatcctaagaaaacacactttctggctctaggttgttacttggttctatgagcttgaagtgtggaagcataacacaatcaaccaaacac 106  Q
    |||||||||| |||||||| |||| | | ||| |  ||||||||||| | ||||||||||||| || |||||| ||| | ||||| |  |||||||||||    
T  463 aacctgacttgtatcctaaaaaaatagattttatatctctaggttgtaatttggttctatgagatttaagtgttgaaccctaacatacacaaccaaacac 364  T
Q  107 cttaaa 112  Q
     |||||    
T  363 tttaaa 358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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