View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12371_low_2 (Length: 373)
Name: NF12371_low_2
Description: NF12371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12371_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 359
Target Start/End: Original strand, 28255773 - 28256114
Alignment:
| Q |
18 |
aaaaatacccaaacttcatcatcaccttcagaataacaacaatgctcctaaacttctaacaaaaattaataactatgatcatcgatcgatcaattcgagg |
117 |
Q |
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| T |
28255773 |
aaaaatacccaaacttcatcatcaccttcagaataacaacaatgctcctaaacttctaacaaaaattaataactatgatcatcgatcgatcaattcgagg |
28255872 |
T |
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| Q |
118 |
gaacatggtagtattttcctttacaaatacatctgtaaaccataggacaagactctgccatagaacatttgttgtaacctaccatgacccttttgcaggg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
28255873 |
gaacatggtagtattttcctttacaaatacatctgtaaaccataggacaagactctgccatagaacatttgttgtaacctaccatgactctcttgcaggg |
28255972 |
T |
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| Q |
218 |
tgaacatggtccacatgcatgggaacaatctggtatggtggaaccggttggatagagttccattacattgctaccttctcttgctccttcctacaaaatc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28255973 |
tgaacatggtccacatgcatgggaacaatctggtatggtggaaccggttggatagagttccattacattgctaccttctcttgctccttcctacaaaatc |
28256072 |
T |
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| Q |
318 |
acaaatatgtgaatcataattgatcattcacttcttgacaca |
359 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| |
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| T |
28256073 |
acaaatatgtgaatcacaattgatcattcacttcttgacaca |
28256114 |
T |
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