View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12371_low_4 (Length: 239)
Name: NF12371_low_4
Description: NF12371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12371_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 43880883 - 43881081
Alignment:
| Q |
18 |
atgaatgaaagaagtagccgttctcacaggttaaatcannnnnnnctttccttgaaatgaaagctttttattatgatgacatgtataaactttacgtgca |
117 |
Q |
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| T |
43880883 |
atgaatgaaagaagtagccgttctcacaggttaaatcatttttttctttccctgaaatgaaagctttttattatgatgacatgtataaactttacgtgca |
43880982 |
T |
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| Q |
118 |
cagtgtggtctcaattcatgttcgcggaaaggacttcaagtctggttctactatgcatggtaatcttcatttggtagatttggccggaagtgaaagagt |
216 |
Q |
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| T |
43880983 |
cagtgtggtctcaattcatgttcgtggaaaggatttcaagtctggttctactatgcatggtaatcttcatttggtagatttggccggaagtgaaagagt |
43881081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 31646151 - 31646114
Alignment:
| Q |
176 |
ggtaatcttcatttggtagatttggccggaagtgaaag |
213 |
Q |
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| T |
31646151 |
ggtaatcttcatttggtagatttggccggaagtgaaag |
31646114 |
T |
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