View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12372_high_4 (Length: 315)
Name: NF12372_high_4
Description: NF12372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12372_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 19 - 307
Target Start/End: Complemental strand, 40838556 - 40838268
Alignment:
| Q |
19 |
aacaatccattaggtcatgctattcatggttgactccacacttgaagattataaacaataggaaaatcgaacgtggacacaccttttaaaatattttcaa |
118 |
Q |
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| T |
40838556 |
aacaatccattagctcatgctattcatggttgactccacacttgaagattataaacaataggaaaatcgaacgtggacacaccttttaaaatattttcaa |
40838457 |
T |
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| Q |
119 |
attttacaattacaaacaaatcgacgacatcaaagtttacattgtagcactttgagaatcatttttcatggcactgcgaagaacttgggttccattgaaa |
218 |
Q |
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| T |
40838456 |
attttacaattacaaacaaatcgacgacatcaaagtttacattgtagcactttgagaatcatttttcatggcactgcgaagaacttgggttccattgaaa |
40838357 |
T |
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| Q |
219 |
tatgtacctgattttttatcaggcatgtcctcactcaaaactgtaactgggtccaaatagattcctaagtaagatatcacaggttctgc |
307 |
Q |
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| T |
40838356 |
tatgtacctgattttttatcaggcatgtcctcactcaaaactgtaactgggtccaaatagattcctaagtaagatatcaaaggttctgc |
40838268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 40843279 - 40843124
Alignment:
| Q |
16 |
tcaaacaatccattaggtcatgctattcatggttgactccacacttgaaga-ttataaacaataggaaaatcgaacgtggacacaccttttaaaatattt |
114 |
Q |
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| T |
40843279 |
tcaaacaattcattaggtcatgctattcatggttgactccacacttgaagaattataaaggataggaaaatcagacgtggacacaccttttaaaaaaaat |
40843180 |
T |
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| Q |
115 |
tcaaattttacaattacaaacaaatcgacgacatcaaagtttacattgtagcactt |
170 |
Q |
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| T |
40843179 |
tcgaatattataattacaaacaaatcaacgacatcaaagtttacattgtagcactt |
40843124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 201 - 307
Target Start/End: Complemental strand, 40843127 - 40843021
Alignment:
| Q |
201 |
acttgggttccattgaaatatgtacctgattttttatcaggcatgtcctcactcaaaactgtaactgggtccaaatagattcctaagtaagatatcacag |
300 |
Q |
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||||||||||||||||| ||||||||| ||||||||||| ||||| ||| | |||||||||||| ||| |||| ||||||||||||| ||||||| || |
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| T |
40843127 |
acttgggttccattgaattatgtacctaattttttatcatgcatgcccttagtcaaaactgtaattggatccatgtagattcctaagtttgatatcaaag |
40843028 |
T |
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| Q |
301 |
gttctgc |
307 |
Q |
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| T |
40843027 |
gttctgc |
40843021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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