View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12372_high_7 (Length: 241)
Name: NF12372_high_7
Description: NF12372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12372_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 14 - 223
Target Start/End: Original strand, 20373657 - 20373866
Alignment:
| Q |
14 |
cacagacaaactactaaacaccaatgcaaactgcagccactggaagctcacaccatacacgaaagaggagctgataaacgttaaactgtgctgcaacaac |
113 |
Q |
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| T |
20373657 |
cacaaacaaactactaaacaccaatgcaaactgcagccactggaagctcacaccatacacgaaagaggagctgataaacgttaaactgtgctgcaacaat |
20373756 |
T |
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| Q |
114 |
tttcaaccgtgctgccatgaatacaaccctacaccacaggtaacatgagggctatgttattgaagattagattctaatcaacatataaataatgagtaat |
213 |
Q |
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| T |
20373757 |
tttcaaccgtgctgccatgaatacaaccctacaccacaggtaacatgagggctatgttattaaagattagattctaatcaacatataaataatgagtaat |
20373856 |
T |
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| Q |
214 |
aattcttgct |
223 |
Q |
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|||||||||| |
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| T |
20373857 |
aattcttgct |
20373866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 189
Target Start/End: Complemental strand, 20423626 - 20423459
Alignment:
| Q |
21 |
aaactactaaacaccaatgcaaactgcagccactggaagctcacaccatacacgaaagaggagctgataaacgttaaactgtgctgcaacaactttcaac |
120 |
Q |
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| T |
20423626 |
aaactaccaagcaccaaagcccaccgcatccactagaaggtcacaccatacacgaacgacgagctgacaa-cattgatttgttctgcaacaactttcaat |
20423528 |
T |
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| Q |
121 |
cgtgctgccatgaatacaaccctacaccacaggtaacatgagggctatgttattgaagattagattcta |
189 |
Q |
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| T |
20423527 |
cgtgctgacatgaatacaaacctacatcacaggtaaaatgagggctgtgttattaaagattagattcta |
20423459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 90 - 180
Target Start/End: Complemental strand, 20339771 - 20339679
Alignment:
| Q |
90 |
aacgttaaactgtgctgcaacaactttcaaccgtgctgccatgaatacaaccctacaccacaggtaacat--gagggctatgttattgaagat |
180 |
Q |
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| T |
20339771 |
aacgttgaactgggctgcaacaaccttcaaccgtgctgccctcaatacaaccctacaccaaaggtaacatacgagggctatgttattaaagat |
20339679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 32 - 189
Target Start/End: Complemental strand, 20442680 - 20442526
Alignment:
| Q |
32 |
caccaatgcaaactgcagccactggaagctcacaccatacacgaaagaggagctgataaacgttaaactgtgctgcaacaactttcaaccgtgctgccat |
131 |
Q |
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| T |
20442680 |
caccaacgcaaaccgcagccactggaaggtcacaccatac--gaacgacgagctgacaa-cattgatgtgttctggaacaacttttaaccgtgctatcat |
20442584 |
T |
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| Q |
132 |
gaatacaaccctacaccacaggtaacatgagggctatgttattgaagattagattcta |
189 |
Q |
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| T |
20442583 |
gaatacaaacctacatcataggtaaaatgtgggctgtgttattaaagattagattcta |
20442526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 104 - 189
Target Start/End: Original strand, 20132831 - 20132916
Alignment:
| Q |
104 |
ctgcaacaactttcaaccgtgctgccatgaatacaaccctacaccacaggtaacatgagggctatgttattgaagattagattcta |
189 |
Q |
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| T |
20132831 |
ctgcaacaaccttcaattgtgctcccatgaatacaaccctacacaaaatgtaacatgagggctatgttattaaaggttggattcta |
20132916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 82 - 189
Target Start/End: Original strand, 20140036 - 20140146
Alignment:
| Q |
82 |
agctgataaacgttaaactgtgctgcaacaactttcaaccgtgctgccatgaatacaaccctaca---ccacaggtaacatgagggctatgttattgaag |
178 |
Q |
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| T |
20140036 |
agctgatcaacgttgaagtgtgctgcagtaaccttcaattgtgctcccatgaatacaaccctacaatcccacaggtgacatgagggttatgttattaaag |
20140135 |
T |
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| Q |
179 |
attagattcta |
189 |
Q |
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| T |
20140136 |
agtagattcta |
20140146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 20408025 - 20407959
Alignment:
| Q |
21 |
aaactactaaacaccaatgcaaactgcagccactggaagctcacaccatacacgaaagaggagctga |
87 |
Q |
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| T |
20408025 |
aaactaccaagcaccaacgcaaaccgcagctactagaaggtcacaccatacacgaacgacgagctga |
20407959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 15963194 - 15963142
Alignment:
| Q |
78 |
gaggagctgataaacgttaaactgtgctgcaacaactttcaaccgtgctgcca |
130 |
Q |
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| T |
15963194 |
gaggagctgatcaacgttgaagtgtgctgcaacaactttcaaccatgctgcca |
15963142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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